Wall clock time and date at job start Tue Mar 31 2020 13:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38118 * 126.29808 * 2 1 4 4 C 1.47286 * 126.42681 * 0.02562 * 3 2 1 5 5 O 1.21530 * 119.99838 * 0.02562 * 4 3 2 6 6 O 1.34755 * 120.00361 * 179.72893 * 4 3 2 7 7 C 1.45201 * 117.00340 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47141 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47226 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47272 * 180.02562 * 9 8 7 11 11 C 1.34515 * 125.79292 * 89.71314 * 10 9 8 12 12 C 1.41376 * 106.84517 * 179.88886 * 11 10 9 13 13 C 1.34523 * 106.83822 * 0.37293 * 12 11 10 14 14 O 1.34297 * 108.42145 * 359.77345 * 13 12 11 15 15 C 1.41346 * 107.14834 * 180.28211 * 3 2 1 16 16 N 1.30428 * 108.00818 * 359.55458 * 15 3 2 17 17 N 1.34224 * 126.29320 * 180.02562 * 2 1 3 18 18 C 1.46500 * 125.74371 * 359.97438 * 17 2 1 19 19 C 1.50709 * 109.47141 * 89.99982 * 18 17 2 20 20 H 1.07996 * 119.99989 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99995 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00160 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00193 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47251 * 90.00164 * 23 21 19 25 25 H 1.48495 * 109.47386 * 210.00195 * 23 21 19 26 26 H 1.48509 * 109.47171 * 329.99895 * 23 21 19 27 27 H 1.08995 * 109.46837 * 89.97552 * 1 2 3 28 28 H 1.09000 * 109.47139 * 209.97876 * 1 2 3 29 29 H 1.08995 * 109.47016 * 329.97490 * 1 2 3 30 30 H 1.08996 * 109.47081 * 299.99559 * 7 6 4 31 31 H 1.08997 * 109.46773 * 59.99751 * 7 6 4 32 32 H 1.09001 * 109.47443 * 300.00074 * 8 7 6 33 33 H 1.09001 * 109.46982 * 59.99892 * 8 7 6 34 34 H 1.09009 * 109.46794 * 300.00066 * 9 8 7 35 35 H 1.09001 * 109.47255 * 60.00026 * 9 8 7 36 36 H 1.07999 * 126.57587 * 0.02656 * 11 10 9 37 37 H 1.08001 * 126.58738 * 180.16183 * 12 11 10 38 38 H 1.08000 * 125.78963 * 179.74621 * 13 12 11 39 39 H 1.07993 * 125.99458 * 179.71193 * 15 3 2 40 40 H 1.09000 * 109.47311 * 209.99337 * 18 17 2 41 41 H 1.08990 * 109.47330 * 329.99888 * 18 17 2 42 42 H 0.96998 * 120.00006 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 0.0005 5 8 0.7019 2.7872 0.0015 6 8 2.8015 3.5096 0.0060 7 6 2.2984 4.8716 0.0067 8 6 3.4747 5.8499 0.0138 9 6 2.9445 7.2850 0.0153 10 6 4.1032 8.2486 0.0216 11 6 4.7154 8.7499 -1.0662 12 6 5.7387 9.6076 -0.6015 13 6 5.6960 9.5727 0.7426 14 8 4.7035 8.7479 1.1144 15 6 3.6599 0.6495 -0.0067 16 7 3.6340 -0.6545 -0.0007 17 7 2.3015 -1.0818 -0.0005 18 6 1.8497 -2.4754 -0.0006 19 6 1.6943 -2.9530 -1.4215 20 1 1.9100 -2.2852 -2.2423 21 6 1.2767 -4.2426 -1.6735 22 7 1.1405 -4.6593 -2.9135 23 14 0.9042 -5.3980 -0.2538 24 1 -0.5266 -5.2732 0.1238 25 1 1.1870 -6.7963 -0.6662 26 1 1.7561 -5.0433 0.9098 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 1.6940 5.0361 -0.8852 31 1 1.6870 5.0325 0.8947 32 1 4.0789 5.6852 0.9060 33 1 4.0864 5.6890 -0.8739 34 1 2.3401 7.4500 -0.8768 35 1 2.3331 7.4456 0.9032 36 1 4.4706 8.5395 -2.0968 37 1 6.4255 10.1785 -1.2089 38 1 6.3494 10.1155 1.4096 39 1 4.5461 1.2667 -0.0128 40 1 2.5845 -3.0957 0.5128 41 1 0.8914 -2.5467 0.5136 42 1 0.8471 -5.5666 -3.0908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893252823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:20 Heat of formation + Delta-G solvation = -29.211428 kcal Electronic energy + Delta-G solvation = -24874.253307 eV Core-core repulsion = 21014.807878 eV Total energy + Delta-G solvation = -3859.445428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44182 -42.45381 -40.91488 -37.64678 -35.82494 -35.60747 -34.04169 -33.76185 -32.96834 -30.88065 -29.79116 -28.45042 -26.89937 -25.10504 -23.88023 -22.80544 -22.63161 -21.78398 -21.19358 -20.45211 -19.29344 -18.79061 -18.22913 -17.57851 -17.50630 -16.96283 -16.73291 -16.46234 -16.00566 -15.66707 -15.36527 -15.21843 -14.62099 -14.41886 -14.20032 -13.88625 -13.85084 -13.72861 -13.70601 -13.58059 -13.45767 -13.17883 -13.07632 -13.04103 -12.55986 -12.34048 -12.17132 -12.03959 -11.85174 -11.82640 -11.39663 -11.30465 -10.91368 -10.81836 -10.33871 -9.66986 -9.34907 -8.42796 -6.55396 0.40766 0.81031 1.15932 1.33283 1.35369 1.43172 1.49212 1.72186 1.90740 2.20116 2.23168 2.25180 2.89564 3.60744 3.63904 3.75290 3.91501 3.95230 4.10060 4.14401 4.20028 4.25464 4.26749 4.38411 4.43414 4.47393 4.60356 4.67041 4.67797 4.73181 4.94012 4.96216 4.99415 5.05859 5.13906 5.16229 5.16554 5.29094 5.47499 5.56767 5.65145 5.77850 6.16714 6.24921 6.47650 6.67261 6.89869 7.08514 8.73494 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034682 B = 0.001948 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.130114 B =14367.946317 C =14572.287544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.163 3.837 3 C -0.322 4.322 4 C 0.558 3.442 5 O -0.542 6.542 6 O -0.354 6.354 7 C 0.065 3.935 8 C -0.106 4.106 9 C -0.032 4.032 10 C -0.025 4.025 11 C -0.222 4.222 12 C -0.230 4.230 13 C -0.048 4.048 14 O -0.195 6.195 15 C 0.098 3.902 16 N -0.333 5.333 17 N -0.334 5.334 18 C 0.232 3.768 19 C -0.555 4.555 20 H 0.027 0.973 21 C 0.023 3.977 22 N -0.934 5.934 23 Si 0.949 3.051 24 H -0.251 1.251 25 H -0.279 1.279 26 H -0.242 1.242 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.233 0.767 39 H 0.223 0.777 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 25.783 9.477 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.026 3.974 3 C -0.336 4.336 4 C 0.406 3.594 5 O -0.434 6.434 6 O -0.271 6.271 7 C -0.009 4.009 8 C -0.143 4.143 9 C -0.069 4.069 10 C -0.075 4.075 11 C -0.241 4.241 12 C -0.249 4.249 13 C -0.114 4.114 14 O -0.092 6.092 15 C -0.089 4.089 16 N -0.152 5.152 17 N -0.110 5.110 18 C 0.112 3.888 19 C -0.593 4.593 20 H 0.045 0.955 21 C -0.177 4.177 22 N -0.572 5.572 23 Si 0.770 3.230 24 H -0.175 1.175 25 H -0.204 1.204 26 H -0.165 1.165 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.249 0.751 39 H 0.240 0.760 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.453 24.426 9.659 26.641 hybrid contribution -0.339 0.103 -0.479 0.596 sum 4.114 24.529 9.179 26.511 Atomic orbital electron populations 1.20704 0.84860 1.05144 1.04402 1.21991 0.96193 0.86268 0.92899 1.19095 0.93860 0.90247 1.30350 1.19715 0.83357 0.84864 0.71504 1.90751 1.18521 1.84803 1.49320 1.86494 1.39379 1.16776 1.84429 1.23197 0.97471 0.76760 1.03427 1.21458 0.96920 0.91567 1.04378 1.20009 0.91987 0.88901 1.06002 1.22622 0.99461 1.01226 0.84181 1.21950 0.99545 1.02418 1.00214 1.22194 1.02786 1.04516 0.95399 1.24740 0.92958 0.96790 0.96951 1.84016 1.39800 1.49649 1.35692 1.24548 0.97884 0.91253 0.95228 1.77165 0.97932 1.14206 1.25867 1.48835 1.03491 1.07473 1.51157 1.19985 0.97106 0.74088 0.97583 1.21167 1.48294 0.98925 0.90874 0.95494 1.25816 0.93608 0.99209 0.99055 1.70023 1.46497 1.19083 1.21598 0.85701 0.80530 0.77760 0.79012 1.17463 1.20420 1.16519 0.89755 0.89432 0.87466 0.90497 0.90488 0.90764 0.90210 0.86759 0.88759 0.82403 0.81838 0.75091 0.76035 0.92321 0.90587 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.06 9.57 71.24 0.68 -2.38 16 2 C 0.16 6.32 7.01 42.17 0.30 6.62 16 3 C -0.32 -11.56 6.13 -20.16 -0.12 -11.68 16 4 C 0.56 17.96 7.95 70.20 0.56 18.52 16 5 O -0.54 -18.64 14.63 19.74 0.29 -18.35 16 6 O -0.35 -9.33 10.07 -56.66 -0.57 -9.90 16 7 C 0.06 1.24 5.48 71.98 0.39 1.63 16 8 C -0.11 -1.57 5.58 30.59 0.17 -1.40 16 9 C -0.03 -0.39 5.75 29.85 0.17 -0.21 16 10 C -0.03 -0.41 6.58 24.83 0.16 -0.25 16 11 C -0.22 -3.47 10.81 22.19 0.24 -3.23 16 12 C -0.23 -3.20 10.91 22.19 0.24 -2.96 16 13 C -0.05 -0.62 12.09 66.97 0.81 0.19 16 14 O -0.19 -3.45 10.65 -2.50 -0.03 -3.48 16 15 C 0.10 3.42 11.87 85.67 1.02 4.43 16 16 N -0.33 -14.11 12.50 -56.25 -0.70 -14.81 16 17 N -0.33 -14.54 3.56 -336.66 -1.20 -15.74 16 18 C 0.23 10.48 5.03 85.64 0.43 10.92 16 19 C -0.55 -30.77 9.94 25.60 0.25 -30.52 16 20 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 21 C 0.02 1.28 5.47 84.65 0.46 1.75 16 22 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 23 Si 0.95 39.47 27.47 68.60 1.88 41.36 16 24 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.09 2.60 7.05 -2.39 -0.02 2.59 16 29 H 0.11 3.23 6.50 -2.39 -0.02 3.21 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.38 8.13 -2.39 -0.02 1.37 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.23 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.22 5.73 8.06 -2.91 -0.02 5.71 16 40 H 0.06 2.62 7.20 -2.39 -0.02 2.60 16 41 H 0.08 3.01 6.44 -2.39 -0.02 2.99 16 42 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -72.29 366.51 6.72 -65.57 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.98 Total: 19.32 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.77 Total: -8.57 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.60 Total: -85.94 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.31 Total: -31.74 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.88 Total: 41.36 kcal Total: -72.29 6.72 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893252823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.359 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds