Wall clock time and date at job start Tue Mar 31 2020 13:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34506 * 125.79149 * 2 1 4 4 C 1.41388 * 106.83998 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83843 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.78599 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47113 * 90.00079 * 6 5 4 8 8 O 1.45205 * 109.47039 * 179.97438 * 7 6 5 9 9 C 1.34753 * 116.99571 * 180.02562 * 8 7 6 10 10 O 1.21529 * 120.00309 * 0.02562 * 9 8 7 11 11 C 1.47289 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.41344 * 126.42572 * 359.68514 * 11 9 8 13 13 N 1.30431 * 108.01734 * 179.81718 * 12 11 9 14 14 N 1.39936 * 108.91241 * 0.45005 * 13 12 11 15 15 C 1.46501 * 125.74061 * 179.74724 * 14 13 12 16 16 C 1.50698 * 109.47217 * 269.95470 * 15 14 13 17 17 H 1.07998 * 119.99555 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00111 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47237 * 89.99915 * 20 18 16 22 22 H 1.48501 * 109.46960 * 209.99642 * 20 18 16 23 23 H 1.48498 * 109.47005 * 329.99675 * 20 18 16 24 24 C 1.34220 * 108.51623 * 359.70987 * 14 13 12 25 25 C 1.50699 * 126.29690 * 179.97438 * 24 14 13 26 26 O 1.34304 * 108.42331 * 0.02562 * 5 4 3 27 27 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46876 * 299.98438 * 1 2 3 29 29 H 1.09004 * 109.46931 * 59.98031 * 1 2 3 30 30 H 1.08000 * 126.58117 * 0.03057 * 3 2 1 31 31 H 1.08001 * 126.57691 * 180.26094 * 4 3 2 32 32 H 1.09000 * 109.47407 * 210.00312 * 6 5 4 33 33 H 1.09004 * 109.47697 * 330.00270 * 6 5 4 34 34 H 1.09002 * 109.47286 * 299.99845 * 7 6 5 35 35 H 1.08997 * 109.46977 * 59.99768 * 7 6 5 36 36 H 1.08008 * 125.99271 * 0.02562 * 12 11 9 37 37 H 1.08999 * 109.47082 * 29.95855 * 15 14 13 38 38 H 1.08998 * 109.46841 * 149.95325 * 15 14 13 39 39 H 0.97004 * 119.99936 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47004 * 269.99658 * 25 24 14 41 41 H 1.08997 * 109.47087 * 30.00394 * 25 24 14 42 42 H 1.09005 * 109.47066 * 150.00383 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7124 -0.0004 6 6 4.7705 -1.6380 -0.0003 7 6 5.1730 -1.9511 1.4423 8 8 6.3184 -2.8435 1.4423 9 6 6.8008 -3.2196 2.6431 10 8 6.2782 -2.8132 3.6623 11 6 7.9607 -4.1240 2.7203 12 6 8.6648 -4.6811 1.6286 13 7 9.6262 -5.4228 2.1048 14 7 9.5781 -5.3852 3.5029 15 6 10.4859 -6.0921 4.4097 16 6 9.9237 -7.4550 4.7216 17 1 8.9844 -7.7639 4.2874 18 6 10.6086 -8.3076 5.5612 19 7 11.7528 -7.9316 6.0895 20 14 9.9120 -9.9973 5.9473 21 1 10.4114 -10.9783 4.9504 22 1 10.3421 -10.4111 7.3071 23 1 8.4290 -9.9460 5.8913 24 6 8.5607 -4.5919 3.8732 25 6 8.1485 -4.2710 5.2867 26 8 2.2924 -1.0895 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5136 0.8901 29 1 -0.3633 0.5142 -0.8899 30 1 1.9667 2.1203 0.0005 31 1 4.5213 1.2431 0.0032 32 1 4.5105 -2.5636 -0.5140 33 1 5.6039 -1.1591 -0.5142 34 1 5.4330 -1.0255 1.9560 35 1 4.3396 -2.4300 1.9562 36 1 8.4472 -4.5181 0.5833 37 1 11.4612 -6.2012 3.9352 38 1 10.5928 -5.5231 5.3332 39 1 12.2349 -8.5316 6.6800 40 1 7.4170 -5.0039 5.6271 41 1 9.0233 -4.3019 5.9362 42 1 7.7069 -3.2749 5.3192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893270059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:51 Heat of formation + Delta-G solvation = -15.246902 kcal Electronic energy + Delta-G solvation = -25017.880351 eV Core-core repulsion = 21159.040470 eV Total energy + Delta-G solvation = -3858.839881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87922 -40.89682 -39.61356 -36.35047 -34.01758 -33.82253 -33.44237 -32.16490 -31.33228 -30.85609 -27.81491 -26.82103 -26.24212 -23.84483 -23.15483 -22.18144 -21.95115 -20.45864 -20.26260 -18.93588 -17.51579 -16.85134 -16.67924 -16.57377 -16.34376 -16.06929 -15.15486 -14.73942 -14.56370 -14.47823 -14.03391 -13.73091 -13.44095 -13.38563 -13.14112 -13.08736 -12.83032 -12.72526 -12.51036 -12.25831 -12.15329 -11.89087 -11.84838 -11.72458 -11.55522 -11.15340 -10.91143 -10.48222 -10.44360 -10.32170 -10.14713 -9.97334 -9.83167 -8.73813 -8.66267 -8.57842 -8.08744 -6.36586 -4.44652 1.36345 1.90310 2.26768 2.48301 2.70165 2.93191 3.16982 3.23479 3.26882 3.41081 3.65844 4.22064 4.34010 4.57618 4.71041 4.73027 4.78123 4.98000 5.00739 5.06004 5.12372 5.14950 5.19901 5.32338 5.39947 5.43492 5.55946 5.58468 5.70087 5.74171 5.89240 5.95326 6.03220 6.25007 6.34549 6.37001 6.69327 6.76464 6.86313 6.88989 7.11839 7.50872 7.69892 7.73413 8.15554 8.33311 8.60585 9.22488 10.71628 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.002071 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.414366 B =13515.933925 C =13797.779063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.199 4.199 5 C -0.012 4.012 6 C -0.038 4.038 7 C 0.074 3.926 8 O -0.356 6.356 9 C 0.553 3.447 10 O -0.529 6.529 11 C -0.319 4.319 12 C 0.081 3.919 13 N -0.297 5.297 14 N -0.310 5.310 15 C 0.250 3.750 16 C -0.541 4.541 17 H 0.066 0.934 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.909 3.091 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.173 3.827 25 C -0.096 4.096 26 O -0.172 6.172 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.186 0.814 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.270 0.730 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 16.232 -10.725 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.233 4.233 4 C -0.218 4.218 5 C -0.062 4.062 6 C -0.075 4.075 7 C -0.001 4.001 8 O -0.273 6.273 9 C 0.400 3.600 10 O -0.419 6.419 11 C -0.332 4.332 12 C -0.107 4.107 13 N -0.116 5.116 14 N -0.086 5.086 15 C 0.133 3.867 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.035 3.965 25 C -0.154 4.154 26 O -0.069 6.069 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.202 0.798 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.906 15.135 -10.519 24.346 hybrid contribution -0.931 -0.147 0.432 1.037 sum -16.837 14.988 -10.087 24.695 Atomic orbital electron populations 1.20320 0.85087 1.04122 1.03563 1.22477 0.94062 0.84154 1.05717 1.21561 0.92687 0.99460 1.09543 1.21634 0.98389 0.93775 1.07966 1.21996 0.82826 0.94258 1.07097 1.19932 0.91794 0.98977 0.96784 1.22841 0.87289 0.93530 0.96411 1.86485 1.45730 1.61301 1.33778 1.20030 0.81677 0.77760 0.80532 1.90769 1.59725 1.55666 1.35759 1.18813 1.05478 1.15589 0.93363 1.23928 0.92786 0.94582 0.99366 1.77221 1.22745 1.22495 0.89154 1.49428 1.22543 1.31811 1.04847 1.19912 0.88408 0.91913 0.86455 1.21235 1.08198 0.98752 1.29771 0.91596 1.24924 0.94650 0.99078 0.94994 1.69914 1.14302 1.37197 1.31205 0.86308 0.79459 0.82891 0.77786 1.20201 1.20777 1.19591 1.21453 0.88463 0.90239 0.96389 1.20624 1.02457 1.03689 0.88634 1.83979 1.16334 1.35158 1.71469 0.90521 0.89612 0.89681 0.83442 0.83222 0.88753 0.87500 0.90863 0.91042 0.79760 0.92281 0.92422 0.92066 0.89497 0.90441 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.42 36.01 0.38 -0.02 16 2 C -0.01 -0.13 7.32 -35.62 -0.26 -0.39 16 3 C -0.21 -1.89 10.81 -39.70 -0.43 -2.32 16 4 C -0.20 -1.87 10.81 -39.70 -0.43 -2.30 16 5 C -0.01 -0.12 6.57 -35.63 -0.23 -0.36 16 6 C -0.04 -0.34 6.13 -27.88 -0.17 -0.51 16 7 C 0.07 0.86 5.46 37.16 0.20 1.06 16 8 O -0.36 -5.08 10.07 -40.64 -0.41 -5.49 16 9 C 0.55 9.51 7.95 34.41 0.27 9.79 16 10 O -0.53 -9.85 14.63 -19.29 -0.28 -10.13 16 11 C -0.32 -5.97 6.13 -105.08 -0.64 -6.61 16 12 C 0.08 1.46 11.87 -16.97 -0.20 1.26 16 13 N -0.30 -6.40 12.50 30.87 0.39 -6.02 16 14 N -0.31 -6.95 3.56 -57.76 -0.21 -7.16 16 15 C 0.25 6.13 5.96 -5.19 -0.03 6.10 16 16 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 17 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 20 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 C 0.17 3.48 7.01 -81.59 -0.57 2.90 16 25 C -0.10 -1.68 9.57 36.01 0.34 -1.34 16 26 O -0.17 -1.92 10.65 5.70 0.06 -1.86 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.19 2.58 8.06 -52.48 -0.42 2.15 16 37 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 42 H 0.09 1.54 6.51 -51.93 -0.34 1.20 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -31.00 370.54 -7.03 -38.03 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.69 Total: 0.74 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.20 Total: -5.77 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.92 Total: -36.74 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.63 Total: -17.48 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.00 -7.03 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893270059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.787 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds