Wall clock time and date at job start Tue Mar 31 2020 13:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34506 * 125.79149 * 2 1 4 4 C 1.41388 * 106.83998 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83843 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.78599 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47113 * 90.00079 * 6 5 4 8 8 O 1.45205 * 109.47039 * 179.97438 * 7 6 5 9 9 C 1.34753 * 116.99571 * 180.02562 * 8 7 6 10 10 O 1.21529 * 120.00309 * 0.02562 * 9 8 7 11 11 C 1.47289 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.41344 * 126.42572 * 359.68514 * 11 9 8 13 13 N 1.30431 * 108.01734 * 179.81718 * 12 11 9 14 14 N 1.39936 * 108.91241 * 0.45005 * 13 12 11 15 15 C 1.46501 * 125.74061 * 179.74724 * 14 13 12 16 16 C 1.50698 * 109.47217 * 269.95470 * 15 14 13 17 17 H 1.07998 * 119.99555 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00111 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47237 * 89.99915 * 20 18 16 22 22 H 1.48501 * 109.46960 * 209.99642 * 20 18 16 23 23 H 1.48498 * 109.47005 * 329.99675 * 20 18 16 24 24 C 1.34220 * 108.51623 * 359.70987 * 14 13 12 25 25 C 1.50699 * 126.29690 * 179.97438 * 24 14 13 26 26 O 1.34304 * 108.42331 * 0.02562 * 5 4 3 27 27 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46876 * 299.98438 * 1 2 3 29 29 H 1.09004 * 109.46931 * 59.98031 * 1 2 3 30 30 H 1.08000 * 126.58117 * 0.03057 * 3 2 1 31 31 H 1.08001 * 126.57691 * 180.26094 * 4 3 2 32 32 H 1.09000 * 109.47407 * 210.00312 * 6 5 4 33 33 H 1.09004 * 109.47697 * 330.00270 * 6 5 4 34 34 H 1.09002 * 109.47286 * 299.99845 * 7 6 5 35 35 H 1.08997 * 109.46977 * 59.99768 * 7 6 5 36 36 H 1.08008 * 125.99271 * 0.02562 * 12 11 9 37 37 H 1.08999 * 109.47082 * 29.95855 * 15 14 13 38 38 H 1.08998 * 109.46841 * 149.95325 * 15 14 13 39 39 H 0.97004 * 119.99936 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47004 * 269.99658 * 25 24 14 41 41 H 1.08997 * 109.47087 * 30.00394 * 25 24 14 42 42 H 1.09005 * 109.47066 * 150.00383 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7124 -0.0004 6 6 4.7705 -1.6380 -0.0003 7 6 5.1730 -1.9511 1.4423 8 8 6.3184 -2.8435 1.4423 9 6 6.8008 -3.2196 2.6431 10 8 6.2782 -2.8132 3.6623 11 6 7.9607 -4.1240 2.7203 12 6 8.6648 -4.6811 1.6286 13 7 9.6262 -5.4228 2.1048 14 7 9.5781 -5.3852 3.5029 15 6 10.4859 -6.0921 4.4097 16 6 9.9237 -7.4550 4.7216 17 1 8.9844 -7.7639 4.2874 18 6 10.6086 -8.3076 5.5612 19 7 11.7528 -7.9316 6.0895 20 14 9.9120 -9.9973 5.9473 21 1 10.4114 -10.9783 4.9504 22 1 10.3421 -10.4111 7.3071 23 1 8.4290 -9.9460 5.8913 24 6 8.5607 -4.5919 3.8732 25 6 8.1485 -4.2710 5.2867 26 8 2.2924 -1.0895 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5136 0.8901 29 1 -0.3633 0.5142 -0.8899 30 1 1.9667 2.1203 0.0005 31 1 4.5213 1.2431 0.0032 32 1 4.5105 -2.5636 -0.5140 33 1 5.6039 -1.1591 -0.5142 34 1 5.4330 -1.0255 1.9560 35 1 4.3396 -2.4300 1.9562 36 1 8.4472 -4.5181 0.5833 37 1 11.4612 -6.2012 3.9352 38 1 10.5928 -5.5231 5.3332 39 1 12.2349 -8.5316 6.6800 40 1 7.4170 -5.0039 5.6271 41 1 9.0233 -4.3019 5.9362 42 1 7.7069 -3.2749 5.3192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893270059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:50 Heat of formation + Delta-G solvation = -31.310699 kcal Electronic energy + Delta-G solvation = -25018.576930 eV Core-core repulsion = 21159.040470 eV Total energy + Delta-G solvation = -3859.536459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57237 -42.42554 -40.93461 -37.60111 -35.83946 -34.71359 -34.09864 -33.88187 -32.87147 -31.57436 -29.45761 -28.39957 -27.09675 -25.49769 -24.32477 -23.39237 -22.68267 -21.79557 -21.08147 -20.48302 -18.94944 -18.73585 -17.76566 -17.56916 -17.28330 -17.09850 -16.77912 -16.31872 -16.03788 -15.33643 -15.14047 -15.08356 -14.58596 -14.33489 -14.14335 -14.00443 -13.75110 -13.74395 -13.73580 -13.62311 -13.53137 -13.14852 -13.02093 -12.90391 -12.83388 -12.70981 -12.51495 -12.32232 -11.86900 -11.85117 -11.53993 -11.31377 -10.83843 -10.76401 -10.33069 -9.66706 -9.25033 -8.38574 -6.54577 0.41929 0.64716 1.18954 1.36256 1.37716 1.39610 1.50078 1.64419 1.81107 2.13858 2.23285 2.32543 2.94190 3.61886 3.66368 3.79806 3.86061 3.89608 3.99988 4.08874 4.12482 4.17413 4.33220 4.49396 4.51741 4.59348 4.67887 4.72742 4.73849 4.80154 4.87136 4.90398 4.94400 5.00585 5.10129 5.11200 5.29084 5.41026 5.48590 5.61265 5.63191 5.73416 5.96193 6.20663 6.53462 6.72194 6.87354 7.16487 8.69436 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.002071 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.414366 B =13515.933925 C =13797.779063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.025 4.025 3 C -0.227 4.227 4 C -0.203 4.203 5 C -0.034 4.034 6 C -0.027 4.027 7 C 0.073 3.927 8 O -0.347 6.347 9 C 0.559 3.441 10 O -0.544 6.544 11 C -0.322 4.322 12 C 0.099 3.901 13 N -0.335 5.335 14 N -0.333 5.333 15 C 0.265 3.735 16 C -0.556 4.556 17 H 0.052 0.948 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.270 1.270 24 C 0.160 3.840 25 C -0.091 4.091 26 O -0.194 6.194 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.227 0.773 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.275 0.725 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 16.965 -11.596 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.245 4.245 4 C -0.222 4.222 5 C -0.083 4.083 6 C -0.064 4.064 7 C -0.001 4.001 8 O -0.263 6.263 9 C 0.407 3.593 10 O -0.436 6.436 11 C -0.335 4.335 12 C -0.088 4.088 13 N -0.154 5.154 14 N -0.109 5.109 15 C 0.147 3.853 16 C -0.594 4.594 17 H 0.071 0.929 18 C -0.177 4.177 19 N -0.553 5.553 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.194 1.194 24 C 0.024 3.976 25 C -0.149 4.149 26 O -0.092 6.092 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.243 0.757 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.560 15.890 -11.408 26.286 hybrid contribution -0.529 -0.237 0.616 0.846 sum -18.088 15.653 -10.791 26.242 Atomic orbital electron populations 1.20497 0.82756 1.04696 1.05129 1.23234 0.95569 0.83829 1.04811 1.21911 0.92531 1.00502 1.09599 1.21973 0.99369 0.93787 1.07026 1.22190 0.82866 0.94796 1.08477 1.19890 0.92180 0.99383 0.94967 1.23047 0.85851 0.92808 0.98378 1.86460 1.46421 1.61497 1.31926 1.19760 0.81159 0.77310 0.81106 1.90762 1.60120 1.56177 1.36574 1.19028 1.05854 1.15564 0.93089 1.24589 0.90877 0.92345 1.00991 1.77179 1.24781 1.24552 0.88877 1.49181 1.23441 1.33166 1.05125 1.19466 0.87798 0.91517 0.86545 1.21379 1.07893 1.00039 1.30118 0.92925 1.25707 0.94859 1.02480 0.94640 1.69991 1.15192 1.38527 1.31579 0.85355 0.78705 0.78494 0.77967 1.19891 1.19633 1.19435 1.21950 0.87979 0.89753 0.97962 1.20652 1.02513 1.04238 0.87471 1.83967 1.16951 1.36335 1.71986 0.90452 0.88183 0.87839 0.81451 0.81688 0.88291 0.85539 0.90620 0.92010 0.75676 0.94711 0.92631 0.91633 0.89317 0.90325 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 71.24 0.74 0.08 16 2 C -0.02 -0.42 7.32 24.83 0.18 -0.24 16 3 C -0.23 -3.64 10.81 22.19 0.24 -3.40 16 4 C -0.20 -3.50 10.81 22.19 0.24 -3.26 16 5 C -0.03 -0.65 6.57 24.83 0.16 -0.49 16 6 C -0.03 -0.45 6.13 29.85 0.18 -0.26 16 7 C 0.07 1.60 5.46 71.98 0.39 1.99 16 8 O -0.35 -9.19 10.07 -56.64 -0.57 -9.76 16 9 C 0.56 18.43 7.95 70.20 0.56 18.99 16 10 O -0.54 -19.66 14.63 19.74 0.29 -19.37 16 11 C -0.32 -11.70 6.13 -20.16 -0.12 -11.83 16 12 C 0.10 3.44 11.87 85.67 1.02 4.45 16 13 N -0.33 -14.44 12.50 -56.24 -0.70 -15.14 16 14 N -0.33 -15.15 3.56 -336.66 -1.20 -16.35 16 15 C 0.27 13.39 5.96 85.63 0.51 13.91 16 16 C -0.56 -30.15 9.39 25.60 0.24 -29.91 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.02 1.32 5.46 84.65 0.46 1.78 16 19 N -0.92 -50.44 13.29 21.45 0.28 -50.15 16 20 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.16 6.45 7.01 42.17 0.30 6.75 16 25 C -0.09 -3.17 9.57 71.24 0.68 -2.49 16 26 O -0.19 -4.17 10.65 -2.51 -0.03 -4.20 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.23 5.61 8.06 -2.91 -0.02 5.59 16 37 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 2.78 7.01 -2.39 -0.02 2.76 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.08 2.69 7.05 -2.39 -0.02 2.67 16 42 H 0.10 3.37 6.51 -2.38 -0.02 3.36 16 Total: -1.00 -66.61 370.54 6.92 -59.69 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.03 Total: 14.99 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.78 Total: -3.93 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -1.62 Total: -81.64 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.31 Total: -33.33 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -66.61 6.92 -59.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893270059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.376 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds