Wall clock time and date at job start Tue Mar 31 2020 12:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00233 * 2 1 4 4 N 1.46498 * 109.47258 * 124.99875 * 3 2 1 5 5 C 1.46505 * 120.00182 * 270.00054 * 4 3 2 6 6 C 1.50699 * 109.46704 * 270.00030 * 5 4 3 7 7 H 1.08005 * 120.00316 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99873 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47348 * 90.00440 * 10 8 6 12 12 H 1.48500 * 109.46968 * 210.00538 * 10 8 6 13 13 H 1.48503 * 109.47097 * 330.00099 * 10 8 6 14 14 C 1.34773 * 120.00295 * 89.99546 * 4 3 2 15 15 O 1.21558 * 120.00374 * 180.02562 * 14 4 3 16 16 C 1.47850 * 119.99773 * 0.02562 * 14 4 3 17 17 C 1.39599 * 120.14474 * 90.25120 * 16 14 4 18 18 C 1.50707 * 120.07376 * 0.02562 * 17 16 14 19 19 C 1.37930 * 119.85436 * 180.25305 * 17 16 14 20 20 C 1.50703 * 119.92886 * 179.77022 * 19 17 16 21 21 C 1.38386 * 120.14455 * 359.49116 * 19 17 16 22 22 C 1.38335 * 120.28886 * 0.25799 * 21 19 17 23 23 C 1.37976 * 120.15053 * 359.97438 * 22 21 19 24 24 N 1.48019 * 120.07742 * 179.97438 * 23 22 21 25 25 O 1.21797 * 119.99660 * 359.97438 * 24 23 22 26 26 O 1.21801 * 120.00058 * 179.97438 * 24 23 22 27 27 H 1.07993 * 120.00238 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99487 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99487 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47122 * 4.99644 * 3 2 1 31 31 H 1.09002 * 109.46823 * 244.99287 * 3 2 1 32 32 H 1.09000 * 109.46752 * 29.99392 * 5 4 3 33 33 H 1.08993 * 109.47436 * 149.99945 * 5 4 3 34 34 H 0.96999 * 120.00060 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.46861 * 270.23204 * 18 17 16 36 36 H 1.09001 * 109.46786 * 30.22629 * 18 17 16 37 37 H 1.08992 * 109.47166 * 150.22466 * 18 17 16 38 38 H 1.09002 * 109.47152 * 269.72293 * 20 19 17 39 39 H 1.09001 * 109.46980 * 149.72394 * 20 19 17 40 40 H 1.09004 * 109.47113 * 29.72375 * 20 19 17 41 41 H 1.08002 * 119.85395 * 180.27750 * 21 19 17 42 42 H 1.08005 * 119.92408 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8444 3.3436 2.4803 7 1 3.3042 3.8369 1.6366 8 6 2.5186 4.0668 3.6081 9 7 1.9592 3.4661 4.6356 10 14 2.8731 5.8995 3.6771 11 1 1.7009 6.6503 3.1598 12 1 3.1365 6.3001 5.0826 13 1 4.0637 6.2051 2.8439 14 6 4.2497 0.8660 0.9825 15 8 5.0214 0.8878 1.9214 16 6 4.6888 0.3284 -0.3229 17 6 5.2711 1.1737 -1.2691 18 6 5.4548 2.6377 -0.9624 19 6 5.6738 0.6668 -2.4871 20 6 6.2980 1.5788 -3.5117 21 6 5.5112 -0.6784 -2.7680 22 6 4.9396 -1.5224 -1.8328 23 6 4.5281 -1.0273 -0.6124 24 7 3.9161 -1.9317 0.3868 25 8 3.7749 -3.1143 0.1320 26 8 3.5538 -1.4932 1.4639 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6215 1.4024 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7303 3.9747 5.4292 35 1 4.5692 3.1890 -1.2784 36 1 5.6010 2.7688 0.1098 37 1 6.3270 3.0142 -1.4967 38 1 5.5190 1.9931 -4.1518 39 1 7.0046 1.0132 -4.1190 40 1 6.8217 2.3897 -3.0054 41 1 5.8323 -1.0711 -3.7215 42 1 4.8159 -2.5714 -2.0581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897823889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:20 Heat of formation + Delta-G solvation = 13.478822 kcal Electronic energy + Delta-G solvation = -28027.819655 eV Core-core repulsion = 24170.225415 eV Total energy + Delta-G solvation = -3857.594240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12194 -40.31041 -38.53860 -36.29720 -35.73103 -34.11695 -33.24392 -32.72113 -31.97447 -28.84808 -28.10898 -27.23349 -25.62826 -25.07183 -23.95727 -22.13524 -21.37664 -20.10392 -19.24499 -18.47478 -18.24111 -17.35265 -16.81620 -16.52404 -16.20349 -15.75356 -15.13318 -14.63937 -14.60923 -14.34041 -14.11839 -13.86399 -13.21110 -13.08675 -12.85100 -12.82364 -12.44244 -12.33277 -12.17061 -11.81686 -11.74157 -11.61632 -11.35381 -11.28432 -11.13404 -10.95043 -10.84813 -10.77271 -10.60220 -10.22274 -9.67954 -9.47870 -9.29295 -9.21029 -9.04613 -8.42861 -7.74812 -6.03483 -4.09011 -0.16762 0.68777 1.37769 1.51619 2.42451 3.01705 3.14268 3.28535 3.35844 3.38285 3.68600 4.19240 4.31125 4.39576 4.49939 4.55827 4.67927 4.90747 5.08796 5.14997 5.18087 5.29996 5.31875 5.34156 5.35721 5.48643 5.52343 5.53493 5.63944 5.76329 5.95123 5.96691 6.06723 6.12254 6.29865 6.52922 6.76551 6.87661 7.05487 7.48457 7.50788 7.82113 7.91508 8.22091 8.28622 8.79452 8.97542 9.55195 11.04599 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.005333 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.046771 B = 5248.975530 C = 6288.265015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.571 5.571 5 C 0.250 3.750 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.890 5.890 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.557 3.443 15 O -0.515 6.515 16 C -0.039 4.039 17 C -0.056 4.056 18 C -0.128 4.128 19 C -0.040 4.040 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.061 4.061 23 C -0.026 4.026 24 N 0.024 4.976 25 O -0.173 6.173 26 O -0.123 6.123 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -5.474 -19.990 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.189 4.189 3 C 0.012 3.988 4 N -0.301 5.301 5 C 0.132 3.868 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.341 3.659 15 O -0.392 6.392 16 C -0.044 4.044 17 C -0.057 4.057 18 C -0.184 4.184 19 C -0.040 4.040 20 C -0.180 4.180 21 C -0.132 4.132 22 C -0.080 4.080 23 C -0.110 4.110 24 N 0.544 4.456 25 O -0.384 6.384 26 O -0.344 6.344 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.165 0.835 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.146 -5.002 -19.750 21.014 hybrid contribution -0.096 0.458 0.374 0.599 sum 5.050 -4.544 -19.377 20.533 Atomic orbital electron populations 1.23806 0.95571 1.01927 0.99886 1.23326 0.96594 0.98432 1.00501 1.20605 0.93194 0.95646 0.89392 1.48070 1.09187 1.59012 1.13818 1.19361 0.95771 0.93511 0.78173 1.21396 1.40929 0.93145 1.01309 0.92461 1.24921 0.95093 0.98603 0.95330 1.69942 1.41704 1.36080 1.05132 0.86529 0.78500 0.85134 0.77411 1.20684 1.21079 1.19951 1.17610 0.83528 0.78958 0.85783 1.90821 1.52933 1.56021 1.39390 1.20227 0.96382 0.91071 0.96723 1.19863 0.97132 0.96995 0.91741 1.21040 1.03099 0.89477 1.04770 1.20149 0.94928 0.94576 0.94343 1.21012 1.00920 0.98990 0.97094 1.21094 1.00058 0.92403 0.99647 1.20916 0.94986 1.01999 0.90100 1.21077 1.08333 0.89840 0.91733 1.43585 0.98938 1.01322 1.01794 1.94477 1.60068 0.99558 1.84295 1.94723 1.50327 1.79690 1.09619 0.88614 0.87956 0.89280 0.88716 0.91554 0.94580 0.93266 0.92660 0.89655 0.89537 0.90098 0.89797 0.90645 0.90021 0.83535 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 14.32 29.01 0.42 -2.12 16 2 C -0.17 -2.82 9.62 -36.03 -0.35 -3.17 16 3 C 0.14 2.37 5.67 -5.20 -0.03 2.34 16 4 N -0.57 -12.47 2.32 -177.55 -0.41 -12.88 16 5 C 0.25 6.62 5.16 -5.19 -0.03 6.59 16 6 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 10 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.56 12.18 2.99 -12.33 -0.04 12.15 16 15 O -0.52 -13.56 16.56 -3.46 -0.06 -13.62 16 16 C -0.04 -0.67 3.91 -104.96 -0.41 -1.08 16 17 C -0.06 -0.75 5.50 -104.22 -0.57 -1.32 16 18 C -0.13 -1.64 9.20 36.01 0.33 -1.31 16 19 C -0.04 -0.38 5.87 -104.68 -0.61 -1.00 16 20 C -0.12 -0.76 9.61 36.01 0.35 -0.41 16 21 C -0.11 -1.00 9.69 -39.49 -0.38 -1.38 16 22 C -0.06 -0.70 9.54 -39.64 -0.38 -1.08 16 23 C -0.03 -0.42 6.54 -79.55 -0.52 -0.94 16 24 N 0.02 0.45 3.31 34.16 0.11 0.56 16 25 O -0.17 -3.03 18.45 -29.46 -0.54 -3.58 16 26 O -0.12 -2.70 14.97 -33.27 -0.50 -3.19 16 27 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 29 H 0.09 1.58 5.19 -52.49 -0.27 1.31 16 30 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 31 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 32 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.05 1.49 7.42 -51.93 -0.39 1.11 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.45 7.08 -51.93 -0.37 1.08 16 37 H 0.08 0.77 5.94 -51.93 -0.31 0.46 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.08 0.49 5.93 -51.93 -0.31 0.18 16 41 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.15 1.45 7.61 -52.48 -0.40 1.05 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -34.51 358.18 -8.20 -42.71 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.27 Total: -0.12 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.65 Total: -6.01 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.44 Total: -37.95 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.10 Total: -20.39 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.51 -8.20 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897823889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.186 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds