Wall clock time and date at job start Tue Mar 31 2020 12:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00233 * 2 1 4 4 N 1.46498 * 109.47258 * 124.99875 * 3 2 1 5 5 C 1.46505 * 120.00182 * 270.00054 * 4 3 2 6 6 C 1.50699 * 109.46704 * 270.00030 * 5 4 3 7 7 H 1.08005 * 120.00316 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99873 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47348 * 90.00440 * 10 8 6 12 12 H 1.48500 * 109.46968 * 210.00538 * 10 8 6 13 13 H 1.48503 * 109.47097 * 330.00099 * 10 8 6 14 14 C 1.34773 * 120.00295 * 89.99546 * 4 3 2 15 15 O 1.21558 * 120.00374 * 180.02562 * 14 4 3 16 16 C 1.47850 * 119.99773 * 0.02562 * 14 4 3 17 17 C 1.39599 * 120.14474 * 90.25120 * 16 14 4 18 18 C 1.50707 * 120.07376 * 0.02562 * 17 16 14 19 19 C 1.37930 * 119.85436 * 180.25305 * 17 16 14 20 20 C 1.50703 * 119.92886 * 179.77022 * 19 17 16 21 21 C 1.38386 * 120.14455 * 359.49116 * 19 17 16 22 22 C 1.38335 * 120.28886 * 0.25799 * 21 19 17 23 23 C 1.37976 * 120.15053 * 359.97438 * 22 21 19 24 24 N 1.48019 * 120.07742 * 179.97438 * 23 22 21 25 25 O 1.21797 * 119.99660 * 359.97438 * 24 23 22 26 26 O 1.21801 * 120.00058 * 179.97438 * 24 23 22 27 27 H 1.07993 * 120.00238 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99487 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99487 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47122 * 4.99644 * 3 2 1 31 31 H 1.09002 * 109.46823 * 244.99287 * 3 2 1 32 32 H 1.09000 * 109.46752 * 29.99392 * 5 4 3 33 33 H 1.08993 * 109.47436 * 149.99945 * 5 4 3 34 34 H 0.96999 * 120.00060 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.46861 * 270.23204 * 18 17 16 36 36 H 1.09001 * 109.46786 * 30.22629 * 18 17 16 37 37 H 1.08992 * 109.47166 * 150.22466 * 18 17 16 38 38 H 1.09002 * 109.47152 * 269.72293 * 20 19 17 39 39 H 1.09001 * 109.46980 * 149.72394 * 20 19 17 40 40 H 1.09004 * 109.47113 * 29.72375 * 20 19 17 41 41 H 1.08002 * 119.85395 * 180.27750 * 21 19 17 42 42 H 1.08005 * 119.92408 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8444 3.3436 2.4803 7 1 3.3042 3.8369 1.6366 8 6 2.5186 4.0668 3.6081 9 7 1.9592 3.4661 4.6356 10 14 2.8731 5.8995 3.6771 11 1 1.7009 6.6503 3.1598 12 1 3.1365 6.3001 5.0826 13 1 4.0637 6.2051 2.8439 14 6 4.2497 0.8660 0.9825 15 8 5.0214 0.8878 1.9214 16 6 4.6888 0.3284 -0.3229 17 6 5.2711 1.1737 -1.2691 18 6 5.4548 2.6377 -0.9624 19 6 5.6738 0.6668 -2.4871 20 6 6.2980 1.5788 -3.5117 21 6 5.5112 -0.6784 -2.7680 22 6 4.9396 -1.5224 -1.8328 23 6 4.5281 -1.0273 -0.6124 24 7 3.9161 -1.9317 0.3868 25 8 3.7749 -3.1143 0.1320 26 8 3.5538 -1.4932 1.4639 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6215 1.4024 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7303 3.9747 5.4292 35 1 4.5692 3.1890 -1.2784 36 1 5.6010 2.7688 0.1098 37 1 6.3270 3.0142 -1.4967 38 1 5.5190 1.9931 -4.1518 39 1 7.0046 1.0132 -4.1190 40 1 6.8217 2.3897 -3.0054 41 1 5.8323 -1.0711 -3.7215 42 1 4.8159 -2.5714 -2.0581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897823889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:19 Heat of formation + Delta-G solvation = -7.694122 kcal Electronic energy + Delta-G solvation = -28028.737783 eV Core-core repulsion = 24170.225415 eV Total energy + Delta-G solvation = -3858.512368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45157 -41.58500 -39.94696 -37.70653 -37.38795 -35.22021 -35.02325 -33.94247 -33.54463 -29.89321 -29.71028 -28.58551 -27.10097 -26.17606 -25.59191 -23.66644 -22.49329 -21.47261 -20.61986 -19.78992 -19.53857 -18.80801 -18.58209 -18.17414 -17.53511 -17.33419 -16.42542 -16.12566 -15.79098 -15.53544 -15.37142 -15.07620 -14.54630 -14.35221 -14.22789 -13.93403 -13.70466 -13.43823 -13.26481 -13.18199 -13.12578 -12.94501 -12.88389 -12.73229 -12.59631 -12.51463 -12.45292 -12.25316 -12.21820 -12.15213 -11.72031 -10.99555 -10.65521 -10.54911 -10.30311 -10.14277 -9.59585 -8.22288 -6.38341 -1.38723 -0.27123 0.18126 0.30442 1.12042 1.35830 1.40110 1.49722 1.57354 2.04675 2.20032 2.40097 3.06988 3.16921 3.22273 3.52035 3.71275 3.74047 3.81965 3.94305 4.01756 4.13758 4.24361 4.43884 4.51175 4.61105 4.63500 4.67024 4.78293 4.85507 4.87321 4.93002 5.01882 5.07253 5.20154 5.22578 5.27199 5.42870 5.51490 5.54429 5.65758 5.79735 6.02174 6.37934 6.52452 6.70238 7.14698 7.33997 8.86069 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.005333 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.046771 B = 5248.975530 C = 6288.265015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.194 4.194 3 C 0.138 3.862 4 N -0.576 5.576 5 C 0.270 3.730 6 C -0.540 4.540 7 H 0.061 0.939 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.973 3.027 11 H -0.261 1.261 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.560 3.440 15 O -0.584 6.584 16 C -0.070 4.070 17 C -0.066 4.066 18 C -0.126 4.126 19 C -0.015 4.015 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.049 4.049 23 C -0.051 4.051 24 N 0.030 4.970 25 O -0.122 6.122 26 O -0.236 6.236 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.019 0.981 33 H -0.008 1.008 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.205 0.795 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 -5.036 -25.782 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.213 4.213 3 C 0.016 3.984 4 N -0.304 5.304 5 C 0.150 3.850 6 C -0.579 4.579 7 H 0.080 0.920 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.796 3.204 11 H -0.186 1.186 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.348 3.652 15 O -0.465 6.465 16 C -0.075 4.075 17 C -0.068 4.068 18 C -0.182 4.182 19 C -0.016 4.016 20 C -0.181 4.181 21 C -0.105 4.105 22 C -0.068 4.068 23 C -0.135 4.135 24 N 0.543 4.457 25 O -0.352 6.352 26 O -0.430 6.430 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.037 0.963 33 H 0.010 0.990 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.222 0.778 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.148 -4.418 -25.433 26.536 hybrid contribution -0.364 0.118 1.895 1.933 sum 5.784 -4.299 -23.538 24.616 Atomic orbital electron populations 1.24072 0.94845 1.03416 0.96781 1.23198 0.97285 0.97483 1.03338 1.20764 0.92743 0.96255 0.88680 1.47959 1.10435 1.58782 1.13254 1.18716 0.93680 0.93077 0.79564 1.21643 1.40931 0.93530 1.01781 0.92040 1.25941 0.94533 1.04131 0.94655 1.70098 1.42677 1.38295 1.05847 0.85344 0.79078 0.78488 0.77467 1.18559 1.20932 1.19167 1.18260 0.82456 0.77249 0.87246 1.90741 1.54683 1.58574 1.42506 1.19838 0.99999 0.92393 0.95256 1.20063 0.97339 0.96610 0.92747 1.21053 1.05223 0.90040 1.01898 1.20660 0.92147 0.95827 0.92936 1.21209 1.01884 0.98664 0.96329 1.21783 0.96862 0.91255 1.00583 1.21450 0.93393 1.03851 0.88091 1.21320 1.10658 0.88921 0.92567 1.44010 0.98237 1.01567 1.01896 1.94378 1.57070 1.00207 1.83553 1.94769 1.55815 1.80194 1.12214 0.86733 0.86718 0.90400 0.88802 0.89002 0.96291 0.99023 0.92412 0.88942 0.94669 0.86246 0.87614 0.87487 0.89891 0.77773 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 14.32 67.78 0.97 -3.49 16 2 C -0.19 -6.73 9.62 25.64 0.25 -6.48 16 3 C 0.14 5.06 5.67 85.63 0.49 5.55 16 4 N -0.58 -27.54 2.32 -833.92 -1.94 -29.48 16 5 C 0.27 15.83 5.16 85.63 0.44 16.28 16 6 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 7 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 8 C 0.01 0.37 5.46 84.66 0.46 0.83 16 9 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 10 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 C 0.56 26.92 2.99 86.79 0.26 27.18 16 15 O -0.58 -34.58 16.56 4.49 0.07 -34.50 16 16 C -0.07 -2.48 3.91 -20.09 -0.08 -2.56 16 17 C -0.07 -1.68 5.50 -19.61 -0.11 -1.78 16 18 C -0.13 -3.18 9.20 71.24 0.66 -2.52 16 19 C -0.02 -0.22 5.87 -19.90 -0.12 -0.33 16 20 C -0.13 -0.67 9.61 71.24 0.68 0.01 16 21 C -0.09 -0.96 9.69 22.33 0.22 -0.74 16 22 C -0.05 -0.92 9.54 22.23 0.21 -0.71 16 23 C -0.05 -1.61 6.54 36.63 0.24 -1.37 16 24 N 0.03 1.15 3.31 -45.85 -0.15 1.00 16 25 O -0.12 -4.23 18.45 18.89 0.35 -3.89 16 26 O -0.24 -11.51 14.97 22.52 0.34 -11.17 16 27 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.11 3.03 7.84 -2.91 -0.02 3.00 16 29 H 0.08 2.93 5.19 -2.91 -0.02 2.91 16 30 H 0.09 3.37 7.72 -2.39 -0.02 3.35 16 31 H 0.09 2.83 6.56 -2.39 -0.02 2.81 16 32 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 33 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 1.25 7.08 -2.39 -0.02 1.23 16 37 H 0.12 1.97 5.94 -2.39 -0.01 1.95 16 38 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.11 0.04 8.08 -2.39 -0.02 0.02 16 40 H 0.08 0.51 5.93 -2.38 -0.01 0.49 16 41 H 0.21 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.18 2.43 7.61 -2.91 -0.02 2.41 16 Total: -1.00 -89.24 358.18 6.84 -82.40 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.05 Total: 8.24 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.81 Total: -1.77 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.80 Total: -86.41 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: 0.76 Total: -49.56 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -89.24 6.84 -82.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897823889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.705 kcal (2) G-P(sol) polarization free energy of solvation -89.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds