Wall clock time and date at job start Tue Mar 31 2020 12:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48498 * 109.47092 * 239.99997 * 3 2 1 5 5 H 1.48507 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47212 * 119.99831 * 3 2 1 7 7 C 1.37870 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00068 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00089 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47177 * 184.71703 * 9 7 2 11 11 C 1.46898 * 111.00152 * 62.26687 * 10 9 7 12 12 C 1.50706 * 109.47050 * 66.04539 * 11 10 9 13 13 C 1.34516 * 125.78772 * 89.99796 * 12 11 10 14 14 C 1.41382 * 106.83810 * 180.02562 * 13 12 11 15 15 C 1.34513 * 106.84443 * 359.97438 * 14 13 12 16 16 O 1.34298 * 125.79026 * 269.69468 * 12 11 10 17 17 C 1.46897 * 110.99992 * 298.31104 * 10 9 7 18 18 C 1.50703 * 109.47372 * 288.14467 * 17 10 9 19 19 N 1.30802 * 127.01653 * 90.02753 * 18 17 10 20 20 O 1.21586 * 111.71315 * 179.97438 * 19 18 17 21 21 C 1.32799 * 111.21858 * 359.93482 * 20 19 18 22 22 C 1.35841 * 106.52429 * 359.88789 * 21 20 19 23 23 C 1.50055 * 123.78447 * 179.43463 * 22 21 20 24 24 O 1.43621 * 107.87456 * 345.78811 * 23 22 21 25 25 C 1.42988 * 114.39852 * 49.87163 * 24 23 22 26 26 C 1.50637 * 130.95437 * 180.22804 * 21 20 19 27 27 H 0.96998 * 120.00364 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46852 * 64.71534 * 9 7 2 29 29 H 1.09003 * 109.47205 * 304.71459 * 9 7 2 30 30 H 1.09002 * 109.47278 * 186.04603 * 11 10 9 31 31 H 1.08994 * 109.47314 * 306.04837 * 11 10 9 32 32 H 1.07997 * 126.57893 * 0.04053 * 13 12 11 33 33 H 1.07996 * 126.57734 * 179.97438 * 14 13 12 34 34 H 1.07991 * 125.79012 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.46992 * 48.14991 * 17 10 9 36 36 H 1.08999 * 109.47331 * 168.14575 * 17 10 9 37 37 H 1.09004 * 109.93608 * 226.09697 * 23 22 21 38 38 H 1.09003 * 109.64289 * 105.31382 * 23 22 21 39 39 H 1.09001 * 109.40122 * 169.40227 * 25 24 23 40 40 H 1.09001 * 109.33905 * 49.61320 * 25 24 23 41 41 H 1.08997 * 109.82138 * 283.63767 * 26 21 20 42 42 H 1.09002 * 109.82372 * 44.57038 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2017 -3.6132 0.1160 11 6 2.9409 -3.5466 1.3837 12 6 1.9899 -3.7675 2.5318 13 6 1.6799 -4.9567 3.0788 14 6 0.7573 -4.7009 4.1191 15 6 0.5591 -3.3707 4.1461 16 8 1.3127 -2.8100 3.1861 17 6 3.1216 -3.6398 -1.0290 18 6 2.3789 -4.0925 -2.2597 19 7 1.7483 -3.3370 -3.1214 20 8 1.2453 -3.9940 -4.0122 21 6 1.4862 -5.2897 -3.8485 22 6 2.2280 -5.4048 -2.7164 23 6 2.7072 -6.7144 -2.1624 24 8 1.9794 -7.7638 -2.8195 25 6 1.9613 -7.6664 -4.2460 26 6 1.0840 -6.4811 -4.6779 27 1 -0.4850 0.8400 -0.0004 28 1 0.6890 -2.5949 -0.9272 29 1 0.5629 -2.5206 0.8467 30 1 3.7110 -4.3179 1.3962 31 1 3.4069 -2.5662 1.4815 32 1 2.0625 -5.9216 2.7806 33 1 0.2995 -5.4330 4.7677 34 1 -0.0924 -2.8429 4.8266 35 1 3.5245 -2.6407 -1.1946 36 1 3.9385 -4.3313 -0.8228 37 1 2.5226 -6.7536 -1.0888 38 1 3.7737 -6.8266 -2.3577 39 1 1.5580 -8.5875 -4.6667 40 1 2.9775 -7.5164 -4.6104 41 1 0.0339 -6.7154 -4.5035 42 1 1.2455 -6.2675 -5.7345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:43 Heat of formation + Delta-G solvation = 49.688894 kcal Electronic energy + Delta-G solvation = -27244.740021 eV Core-core repulsion = 23388.715968 eV Total energy + Delta-G solvation = -3856.024053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.57502 -41.91698 -38.83108 -37.17787 -33.85208 -32.98934 -32.57215 -32.21836 -30.52859 -29.86941 -27.50617 -26.43247 -25.90872 -24.17682 -23.90268 -21.89660 -21.10734 -20.60753 -19.64225 -19.39877 -17.35999 -17.27933 -16.86695 -16.24877 -16.15541 -15.61518 -15.56979 -14.89304 -14.78358 -14.27439 -14.18641 -13.94168 -13.77654 -13.57376 -12.94933 -12.70858 -12.30227 -12.23116 -12.18012 -11.84536 -11.72383 -11.37508 -11.20798 -11.09138 -10.96321 -10.86464 -10.60484 -10.29123 -10.10863 -10.00822 -9.73668 -9.43758 -9.32931 -8.79799 -8.36622 -7.93032 -7.35376 -5.97733 -4.05534 1.76239 2.30295 2.63179 3.16164 3.24563 3.31735 3.36254 3.37830 3.65141 3.67347 4.44462 4.51176 4.61367 4.81383 4.92238 5.03606 5.13804 5.17562 5.32228 5.33807 5.34924 5.38876 5.53771 5.55030 5.59299 5.62033 5.75364 5.88519 5.92733 6.07186 6.15560 6.30881 6.32883 6.46100 6.49136 6.68744 6.94903 7.04536 7.15812 7.54499 7.76949 7.88338 7.95209 8.10078 8.27136 8.73523 8.99453 9.59799 11.09046 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005158 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.041643 B = 5427.405582 C = 7429.945066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.072 3.928 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.186 3.814 10 N -0.532 5.532 11 C 0.134 3.866 12 C 0.029 3.971 13 C -0.217 4.217 14 C -0.223 4.223 15 C -0.049 4.049 16 O -0.155 6.155 17 C 0.131 3.869 18 C 0.067 3.933 19 N -0.339 5.339 20 O 0.109 5.891 21 C -0.049 4.049 22 C -0.238 4.238 23 C 0.144 3.856 24 O -0.377 6.377 25 C 0.065 3.935 26 C -0.067 4.067 27 H 0.262 0.738 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.193 0.807 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -15.468 -3.263 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.131 4.131 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.061 3.939 10 N -0.258 5.258 11 C 0.007 3.993 12 C -0.023 4.023 13 C -0.237 4.237 14 C -0.242 4.242 15 C -0.118 4.118 16 O -0.049 6.049 17 C 0.002 3.998 18 C -0.092 4.092 19 N -0.044 5.044 20 O 0.044 5.956 21 C -0.115 4.115 22 C -0.242 4.242 23 C 0.068 3.932 24 O -0.295 6.295 25 C -0.012 4.012 26 C -0.105 4.105 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.210 0.790 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.600 -14.280 -3.342 15.370 hybrid contribution 0.834 1.251 0.222 1.520 sum 5.434 -13.029 -3.120 14.458 Atomic orbital electron populations 1.69930 1.06014 1.26770 1.49658 1.24857 0.94664 0.98891 0.94713 0.86758 0.79776 0.83608 0.78476 1.20314 1.21205 1.20278 1.21468 0.92760 0.91983 1.52312 0.92814 1.19835 0.90832 0.84896 0.98332 1.62585 1.16410 1.48105 0.98679 1.20358 0.91641 1.01906 0.85443 1.22267 0.97695 0.86185 0.96109 1.21404 1.03886 0.98118 1.00329 1.21677 1.03897 0.95899 1.02756 1.23911 0.99393 0.93512 0.94950 1.84211 1.45833 1.36854 1.38039 1.20221 0.92488 1.01069 0.85985 1.22725 0.99710 0.88867 0.97904 1.74580 1.11677 1.18360 0.99746 1.84754 1.56292 1.14867 1.39661 1.23867 1.01311 0.87366 0.98946 1.21251 1.07108 0.97317 0.98550 1.20851 0.94358 0.80296 0.97708 1.88087 1.75275 1.47716 1.18442 1.22660 0.98966 0.97596 0.82025 1.20895 1.02259 0.88500 0.98840 0.92853 0.94871 0.94332 0.89723 0.91701 0.84147 0.84316 0.79043 0.91089 0.90573 0.86691 0.91594 0.87501 0.92466 0.88359 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.55 -15.13 7.34 -34.44 -0.25 -15.38 16 8 H 0.05 1.44 5.95 -52.48 -0.31 1.13 16 9 C 0.19 4.92 4.80 -4.98 -0.02 4.89 16 10 N -0.53 -11.19 4.65 -238.97 -1.11 -12.30 16 11 C 0.13 2.52 5.30 -4.97 -0.03 2.49 16 12 C 0.03 0.57 5.88 -35.62 -0.21 0.36 16 13 C -0.22 -3.71 10.81 -39.70 -0.43 -4.14 16 14 C -0.22 -3.57 10.91 -39.70 -0.43 -4.00 16 15 C -0.05 -0.84 12.09 29.42 0.36 -0.48 16 16 O -0.16 -3.32 10.00 5.71 0.06 -3.26 16 17 C 0.13 2.47 5.40 -4.98 -0.03 2.44 16 18 C 0.07 1.28 6.14 -82.46 -0.51 0.77 16 19 N -0.34 -7.30 11.51 33.44 0.38 -6.92 16 20 O 0.11 2.03 11.19 20.08 0.22 2.25 16 21 C -0.05 -0.75 7.51 -35.20 -0.26 -1.01 16 22 C -0.24 -3.78 6.17 -105.22 -0.65 -4.43 16 23 C 0.14 1.82 7.26 35.69 0.26 2.08 16 24 O -0.38 -4.62 10.76 -35.23 -0.38 -5.00 16 25 C 0.06 0.57 6.77 37.50 0.25 0.83 16 26 C -0.07 -0.66 6.56 -27.57 -0.18 -0.84 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.98 6.97 -51.93 -0.36 0.62 16 29 H 0.04 1.13 6.70 -51.93 -0.35 0.79 16 30 H 0.08 1.25 7.86 -51.93 -0.41 0.84 16 31 H 0.06 1.33 6.54 -51.93 -0.34 0.99 16 32 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.19 2.56 8.06 -52.49 -0.42 2.14 16 35 H 0.07 1.50 6.21 -51.93 -0.32 1.18 16 36 H 0.08 1.12 7.81 -51.93 -0.41 0.72 16 37 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -34.61 349.97 -7.50 -42.11 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.44 Total: 1.51 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.23 Total: -14.45 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.01 Total: -45.45 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.10 Total: -6.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.61 -7.50 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.797 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds