Wall clock time and date at job start Tue Mar 31 2020 12:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48498 * 109.47092 * 239.99997 * 3 2 1 5 5 H 1.48507 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47212 * 119.99831 * 3 2 1 7 7 C 1.37870 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00068 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00089 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47177 * 184.71703 * 9 7 2 11 11 C 1.46898 * 111.00152 * 62.26687 * 10 9 7 12 12 C 1.50706 * 109.47050 * 66.04539 * 11 10 9 13 13 C 1.34516 * 125.78772 * 89.99796 * 12 11 10 14 14 C 1.41382 * 106.83810 * 180.02562 * 13 12 11 15 15 C 1.34513 * 106.84443 * 359.97438 * 14 13 12 16 16 O 1.34298 * 125.79026 * 269.69468 * 12 11 10 17 17 C 1.46897 * 110.99992 * 298.31104 * 10 9 7 18 18 C 1.50703 * 109.47372 * 288.14467 * 17 10 9 19 19 N 1.30802 * 127.01653 * 90.02753 * 18 17 10 20 20 O 1.21586 * 111.71315 * 179.97438 * 19 18 17 21 21 C 1.32799 * 111.21858 * 359.93482 * 20 19 18 22 22 C 1.35841 * 106.52429 * 359.88789 * 21 20 19 23 23 C 1.50055 * 123.78447 * 179.43463 * 22 21 20 24 24 O 1.43621 * 107.87456 * 345.78811 * 23 22 21 25 25 C 1.42988 * 114.39852 * 49.87163 * 24 23 22 26 26 C 1.50637 * 130.95437 * 180.22804 * 21 20 19 27 27 H 0.96998 * 120.00364 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46852 * 64.71534 * 9 7 2 29 29 H 1.09003 * 109.47205 * 304.71459 * 9 7 2 30 30 H 1.09002 * 109.47278 * 186.04603 * 11 10 9 31 31 H 1.08994 * 109.47314 * 306.04837 * 11 10 9 32 32 H 1.07997 * 126.57893 * 0.04053 * 13 12 11 33 33 H 1.07996 * 126.57734 * 179.97438 * 14 13 12 34 34 H 1.07991 * 125.79012 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.46992 * 48.14991 * 17 10 9 36 36 H 1.08999 * 109.47331 * 168.14575 * 17 10 9 37 37 H 1.09004 * 109.93608 * 226.09697 * 23 22 21 38 38 H 1.09003 * 109.64289 * 105.31382 * 23 22 21 39 39 H 1.09001 * 109.40122 * 169.40227 * 25 24 23 40 40 H 1.09001 * 109.33905 * 49.61320 * 25 24 23 41 41 H 1.08997 * 109.82138 * 283.63767 * 26 21 20 42 42 H 1.09002 * 109.82372 * 44.57038 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2017 -3.6132 0.1160 11 6 2.9409 -3.5466 1.3837 12 6 1.9899 -3.7675 2.5318 13 6 1.6799 -4.9567 3.0788 14 6 0.7573 -4.7009 4.1191 15 6 0.5591 -3.3707 4.1461 16 8 1.3127 -2.8100 3.1861 17 6 3.1216 -3.6398 -1.0290 18 6 2.3789 -4.0925 -2.2597 19 7 1.7483 -3.3370 -3.1214 20 8 1.2453 -3.9940 -4.0122 21 6 1.4862 -5.2897 -3.8485 22 6 2.2280 -5.4048 -2.7164 23 6 2.7072 -6.7144 -2.1624 24 8 1.9794 -7.7638 -2.8195 25 6 1.9613 -7.6664 -4.2460 26 6 1.0840 -6.4811 -4.6779 27 1 -0.4850 0.8400 -0.0004 28 1 0.6890 -2.5949 -0.9272 29 1 0.5629 -2.5206 0.8467 30 1 3.7110 -4.3179 1.3962 31 1 3.4069 -2.5662 1.4815 32 1 2.0625 -5.9216 2.7806 33 1 0.2995 -5.4330 4.7677 34 1 -0.0924 -2.8429 4.8266 35 1 3.5245 -2.6407 -1.1946 36 1 3.9385 -4.3313 -0.8228 37 1 2.5226 -6.7536 -1.0888 38 1 3.7737 -6.8266 -2.3577 39 1 1.5580 -8.5875 -4.6667 40 1 2.9775 -7.5164 -4.6104 41 1 0.0339 -6.7154 -4.5035 42 1 1.2455 -6.2675 -5.7345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:42 Heat of formation + Delta-G solvation = 24.963083 kcal Electronic energy + Delta-G solvation = -27245.812213 eV Core-core repulsion = 23388.715968 eV Total energy + Delta-G solvation = -3857.096245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.94986 -43.31445 -39.73621 -38.84969 -35.28292 -34.55654 -34.00764 -33.71110 -31.64391 -31.24871 -29.44103 -27.86065 -27.08720 -26.03487 -24.80706 -23.48167 -22.45948 -21.99555 -21.05450 -20.76592 -18.82473 -18.74335 -18.30636 -17.90076 -17.19988 -17.06543 -16.80114 -16.54450 -15.94023 -15.71162 -15.67024 -15.63730 -14.95444 -14.50047 -14.48722 -14.00417 -13.65613 -13.53061 -13.50667 -13.24303 -13.19058 -13.00747 -12.81699 -12.64760 -12.55300 -12.35095 -12.08079 -11.95100 -11.87218 -11.79869 -11.06719 -10.72552 -10.68105 -10.60187 -9.99331 -9.35812 -9.10655 -8.17352 -6.33880 0.52975 0.91109 1.26418 1.30006 1.32994 1.39514 1.85835 2.14651 2.33606 2.36654 2.82927 3.10675 3.23723 3.54627 3.59902 3.81960 3.92765 3.98561 4.10907 4.26271 4.28015 4.30957 4.41177 4.48647 4.54282 4.58442 4.65877 4.74377 4.82081 4.85659 4.95816 5.01308 5.01803 5.14497 5.16283 5.22814 5.29145 5.37942 5.71518 5.79068 5.91099 6.11395 6.13946 6.31322 6.46764 6.82126 7.35484 7.41312 8.87531 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005158 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.041643 B = 5427.405582 C = 7429.945066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.212 3.788 10 N -0.528 5.528 11 C 0.136 3.864 12 C -0.012 4.012 13 C -0.205 4.205 14 C -0.219 4.219 15 C -0.066 4.066 16 O -0.200 6.200 17 C 0.133 3.867 18 C 0.047 3.953 19 N -0.398 5.398 20 O 0.095 5.905 21 C -0.048 4.048 22 C -0.243 4.243 23 C 0.149 3.851 24 O -0.392 6.392 25 C 0.061 3.939 26 C -0.066 4.066 27 H 0.261 0.739 28 H -0.006 1.006 29 H 0.001 0.999 30 H 0.133 0.867 31 H 0.040 0.960 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.220 0.780 35 H 0.041 0.959 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 -18.256 -3.302 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.086 3.914 10 N -0.252 5.252 11 C 0.009 3.991 12 C -0.062 4.062 13 C -0.225 4.225 14 C -0.237 4.237 15 C -0.134 4.134 16 O -0.096 6.096 17 C 0.005 3.995 18 C -0.111 4.111 19 N -0.105 5.105 20 O 0.032 5.968 21 C -0.113 4.113 22 C -0.248 4.248 23 C 0.072 3.928 24 O -0.310 6.310 25 C -0.015 4.015 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.150 0.850 31 H 0.058 0.942 32 H 0.187 0.813 33 H 0.192 0.808 34 H 0.236 0.764 35 H 0.059 0.941 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.112 -17.098 -3.385 18.470 hybrid contribution 0.325 1.980 0.212 2.018 sum 6.437 -15.118 -3.174 16.735 Atomic orbital electron populations 1.70082 1.07722 1.27520 1.51358 1.25752 0.95489 1.02750 0.94622 0.85701 0.78528 0.79171 0.78860 1.19776 1.20853 1.19077 1.21766 0.93066 0.92719 1.50759 0.92317 1.19244 0.91158 0.86531 0.94495 1.62451 1.16994 1.45144 1.00631 1.20523 0.92183 1.02272 0.84141 1.22570 0.99318 0.87003 0.97329 1.21812 1.02903 0.98260 0.99514 1.22115 1.03112 0.95967 1.02542 1.24670 0.99331 0.94731 0.94636 1.84165 1.47174 1.38730 1.39556 1.20324 0.93088 1.00807 0.85251 1.22992 0.99798 0.90485 0.97785 1.74552 1.13829 1.20587 1.01485 1.84669 1.56355 1.16622 1.39184 1.24912 0.99909 0.87085 0.99431 1.21643 1.07199 0.97320 0.98597 1.20954 0.95786 0.78512 0.97545 1.88072 1.75419 1.47126 1.20390 1.22985 0.99846 0.98325 0.80369 1.21257 1.02907 0.86425 0.99780 0.92983 0.98826 0.98042 0.84951 0.94166 0.81342 0.80833 0.76396 0.94056 0.85781 0.86939 0.88785 0.84116 0.90986 0.87633 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.14 13.29 21.44 0.28 -58.85 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.95 46.62 29.54 68.60 2.03 48.65 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -31.47 7.34 25.60 0.19 -31.28 16 8 H 0.06 3.26 5.95 -2.91 -0.02 3.24 16 9 C 0.21 11.85 4.80 85.56 0.41 12.26 16 10 N -0.53 -22.60 4.65 -909.95 -4.23 -26.83 16 11 C 0.14 5.07 5.30 85.56 0.45 5.52 16 12 C -0.01 -0.46 5.88 24.84 0.15 -0.32 16 13 C -0.21 -6.62 10.81 22.19 0.24 -6.38 16 14 C -0.22 -6.55 10.91 22.19 0.24 -6.31 16 15 C -0.07 -2.26 12.09 66.97 0.81 -1.45 16 16 O -0.20 -8.81 10.00 -2.48 -0.02 -8.83 16 17 C 0.13 5.05 5.40 85.56 0.46 5.52 16 18 C 0.05 1.84 6.14 43.08 0.26 2.10 16 19 N -0.40 -17.96 11.51 -48.64 -0.56 -18.52 16 20 O 0.09 3.64 11.19 81.82 0.92 4.56 16 21 C -0.05 -1.41 7.51 25.11 0.19 -1.22 16 22 C -0.24 -7.49 6.17 -20.25 -0.13 -7.62 16 23 C 0.15 3.34 7.26 71.03 0.52 3.86 16 24 O -0.39 -8.32 10.76 -148.98 -1.60 -9.92 16 25 C 0.06 0.84 6.77 72.20 0.49 1.33 16 26 C -0.07 -1.12 6.56 30.05 0.20 -0.93 16 27 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 28 H -0.01 -0.40 6.97 -2.39 -0.02 -0.42 16 29 H 0.00 0.09 6.70 -2.39 -0.02 0.08 16 30 H 0.13 3.57 7.86 -2.39 -0.02 3.55 16 31 H 0.04 1.69 6.54 -2.39 -0.02 1.67 16 32 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.22 5.72 8.06 -2.92 -0.02 5.69 16 35 H 0.04 1.80 6.21 -2.39 -0.01 1.79 16 36 H 0.12 3.40 7.81 -2.39 -0.02 3.38 16 37 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -81.96 349.97 2.80 -79.16 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.05 Total: 14.26 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.94 Total: -23.67 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.50 Total: -104.20 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.71 Total: -14.20 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -81.96 2.80 -79.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.120 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds