Wall clock time and date at job start Tue Mar 31 2020 13:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35450 * 126.77471 * 2 1 4 4 C 1.41382 * 103.98076 * 180.09809 * 3 2 1 5 5 C 1.50706 * 126.80041 * 179.88324 * 4 3 2 6 6 C 1.53000 * 109.46735 * 124.71017 * 5 4 3 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47398 * 89.99557 * 10 9 7 12 12 H 1.08003 * 120.00015 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00048 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99916 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00086 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47340 * 89.99836 * 15 13 11 17 17 H 1.48500 * 109.47003 * 210.00191 * 15 13 11 18 18 H 1.48498 * 109.47056 * 329.99743 * 15 13 11 19 19 C 1.46505 * 119.99832 * 359.97438 * 9 7 6 20 20 C 1.50703 * 109.47045 * 90.00120 * 19 9 7 21 21 C 1.34507 * 125.78535 * 89.71833 * 20 19 9 22 22 C 1.41390 * 106.83847 * 179.88997 * 21 20 19 23 23 C 1.34511 * 106.83678 * 0.37069 * 22 21 20 24 24 O 1.34297 * 125.79035 * 270.02347 * 20 19 9 25 25 N 1.30168 * 106.39772 * 359.62671 * 4 3 2 26 26 O 1.20918 * 111.60570 * 0.23776 * 25 4 3 27 27 H 1.09007 * 109.47145 * 180.30426 * 1 2 3 28 28 H 1.09003 * 109.47177 * 300.29684 * 1 2 3 29 29 H 1.08998 * 109.47663 * 60.29885 * 1 2 3 30 30 H 1.07995 * 128.01197 * 359.96036 * 3 2 1 31 31 H 1.09001 * 109.46797 * 4.71365 * 5 4 3 32 32 H 1.08992 * 109.47518 * 244.71363 * 5 4 3 33 33 H 1.09002 * 109.47398 * 300.00410 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00591 * 6 5 4 35 35 H 1.09000 * 109.47082 * 209.99555 * 10 9 7 36 36 H 1.09004 * 109.46754 * 329.99821 * 10 9 7 37 37 H 0.96999 * 119.99664 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47024 * 210.00620 * 19 9 7 39 39 H 1.09000 * 109.46875 * 330.00379 * 19 9 7 40 40 H 1.07998 * 126.58339 * 0.02562 * 21 20 19 41 41 H 1.08001 * 126.57884 * 180.16407 * 22 21 20 42 42 H 1.08004 * 125.78647 * 179.75128 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.3000 -0.0058 6 6 5.7791 0.8506 1.1786 7 6 7.0786 1.6138 1.1755 8 8 7.2971 2.4357 0.3109 9 7 7.9985 1.3821 2.1330 10 6 9.2615 2.1244 2.1303 11 6 9.1045 3.3858 2.9397 12 1 8.1587 3.6118 3.4096 13 6 10.1684 4.2514 3.0805 14 7 10.0313 5.3526 3.7865 15 14 11.8042 3.8609 2.2674 16 1 11.8304 4.4449 0.9024 17 1 12.9086 4.4389 3.0744 18 1 11.9740 2.3883 2.1790 19 6 7.7348 0.3888 3.1771 20 6 8.2337 -0.9595 2.7252 21 6 9.4689 -1.4505 2.9308 22 6 9.5007 -2.7375 2.3463 23 6 8.2854 -2.9525 1.8113 24 8 7.5222 -1.8723 2.0438 25 7 3.4763 -0.7564 0.0047 26 8 2.3095 -1.0736 0.0061 27 1 -0.3634 -1.0277 0.0055 28 1 -0.3634 0.5184 0.8873 29 1 -0.3634 0.5092 -0.8926 30 1 2.0345 2.1271 -0.0006 31 1 4.7162 2.3672 0.0782 32 1 5.4546 1.1045 -0.9359 33 1 5.2456 1.0461 2.1087 34 1 5.9840 -0.2167 1.0946 35 1 10.0464 1.5074 2.5677 36 1 9.5297 2.3813 1.1055 37 1 10.7797 5.9617 3.8852 38 1 8.2500 0.6787 4.0928 39 1 6.6624 0.3352 3.3649 40 1 10.2801 -0.9573 3.4457 41 1 10.3406 -3.4162 2.3294 42 1 7.9761 -3.8428 1.2838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931269751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:30 Heat of formation + Delta-G solvation = 17.154381 kcal Electronic energy + Delta-G solvation = -26333.049419 eV Core-core repulsion = 22475.614563 eV Total energy + Delta-G solvation = -3857.434856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.90445 -43.48440 -40.87943 -37.14097 -36.30564 -34.84828 -34.39072 -33.88936 -32.67426 -31.67941 -29.95770 -28.61262 -26.98004 -26.49318 -24.16082 -23.78973 -22.63554 -21.73579 -20.77354 -20.05002 -19.20589 -18.67064 -18.46244 -18.12314 -17.85256 -17.33778 -16.77036 -16.59646 -16.05957 -15.56088 -15.46444 -14.92091 -14.74108 -14.48750 -14.32429 -14.02471 -13.91235 -13.75973 -13.67195 -13.61273 -13.53041 -13.29675 -13.15071 -13.05663 -12.70477 -12.54761 -12.49288 -12.09164 -11.86430 -11.76227 -11.05507 -10.85739 -10.83897 -10.74962 -10.20902 -9.71706 -9.42024 -8.34613 -6.39471 0.56094 0.71535 1.23831 1.31660 1.35189 1.43311 1.60383 1.68264 2.09683 2.26973 2.29580 2.33536 2.99400 3.14651 3.44697 3.66042 3.76874 3.96110 3.98498 4.07835 4.15139 4.19405 4.30727 4.41145 4.45375 4.54556 4.57557 4.75095 4.78700 4.80792 4.88596 4.90595 4.91693 4.97278 5.02358 5.10634 5.19263 5.30277 5.41003 5.47240 5.61664 6.19955 6.21510 6.49480 6.62118 7.16250 7.29260 7.35796 8.81833 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.003836 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.836013 B = 7297.613757 C = 9107.624830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 C -0.243 4.243 4 C 0.012 3.988 5 C -0.020 4.020 6 C -0.120 4.120 7 C 0.506 3.494 8 O -0.581 6.581 9 N -0.595 5.595 10 C 0.228 3.772 11 C -0.534 4.534 12 H 0.037 0.963 13 C 0.017 3.983 14 N -0.941 5.941 15 Si 0.940 3.060 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.242 1.242 19 C 0.190 3.810 20 C -0.049 4.049 21 C -0.205 4.205 22 C -0.225 4.225 23 C -0.037 4.037 24 O -0.186 6.186 25 N -0.391 5.391 26 O 0.090 5.910 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.191 0.809 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.017 0.983 37 H 0.269 0.731 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 -17.849 -4.597 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.264 4.264 4 C -0.146 4.146 5 C -0.058 4.058 6 C -0.160 4.160 7 C 0.295 3.705 8 O -0.461 6.461 9 N -0.325 5.325 10 C 0.106 3.894 11 C -0.573 4.573 12 H 0.055 0.945 13 C -0.181 4.181 14 N -0.581 5.581 15 Si 0.763 3.237 16 H -0.203 1.203 17 H -0.198 1.198 18 H -0.165 1.165 19 C 0.067 3.933 20 C -0.100 4.100 21 C -0.226 4.226 22 C -0.244 4.244 23 C -0.105 4.105 24 O -0.082 6.082 25 N -0.096 5.096 26 O 0.024 5.976 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.209 0.791 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.127 0.873 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.940 -18.246 -5.049 24.117 hybrid contribution 1.072 1.228 -0.097 1.632 sum -13.868 -17.019 -5.146 22.549 Atomic orbital electron populations 1.20582 0.80640 1.05960 1.05705 1.25284 0.98007 0.85078 1.00557 1.22750 0.90296 1.02541 1.10829 1.23598 0.97824 0.90134 1.03072 1.19596 0.88799 0.99131 0.98304 1.21588 0.92110 1.01109 1.01195 1.21156 0.86235 0.82451 0.80631 1.90638 1.79841 1.36819 1.38823 1.48025 1.18611 1.38268 1.27561 1.19333 0.82772 0.90992 0.96306 1.21499 0.98439 1.05634 1.31705 0.94498 1.25733 1.02813 0.94331 0.95253 1.70031 1.33465 1.12692 1.41885 0.85824 0.78921 0.80419 0.78498 1.20315 1.19848 1.16484 1.20030 1.03375 0.79306 0.90611 1.22993 0.92677 0.92994 1.01297 1.21942 0.97352 0.97337 1.05928 1.22140 0.99874 0.97922 1.04477 1.24813 0.90717 0.91408 1.03515 1.84020 1.41552 1.24263 1.58366 1.73828 0.97796 1.16858 1.21143 1.84781 1.11149 1.34149 1.67490 0.88726 0.87461 0.87416 0.79137 0.88833 0.90592 0.87439 0.87919 0.93425 0.96492 0.92211 0.86278 0.87290 0.83331 0.81250 0.74660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 71.24 0.74 0.27 16 2 C -0.03 -0.44 7.49 25.04 0.19 -0.25 16 3 C -0.24 -4.90 11.05 22.40 0.25 -4.66 16 4 C 0.01 0.31 6.59 43.58 0.29 0.59 16 5 C -0.02 -0.60 5.10 29.85 0.15 -0.44 16 6 C -0.12 -3.82 4.22 29.85 0.13 -3.69 16 7 C 0.51 21.31 7.67 87.66 0.67 21.98 16 8 O -0.58 -29.38 15.56 -3.02 -0.05 -29.43 16 9 N -0.59 -24.90 2.44 -830.50 -2.03 -26.92 16 10 C 0.23 11.22 4.23 85.63 0.36 11.58 16 11 C -0.53 -31.06 9.94 25.60 0.25 -30.80 16 12 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 13 C 0.02 1.01 5.47 84.65 0.46 1.48 16 14 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 15 Si 0.94 44.52 27.47 68.60 1.88 46.40 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.24 -10.41 6.54 99.48 0.65 -9.75 16 19 C 0.19 6.15 5.74 85.63 0.49 6.64 16 20 C -0.05 -1.49 6.85 24.83 0.17 -1.32 16 21 C -0.21 -5.97 10.81 22.19 0.24 -5.73 16 22 C -0.23 -5.35 10.91 22.19 0.24 -5.11 16 23 C -0.04 -0.84 12.09 66.97 0.81 -0.03 16 24 O -0.19 -5.33 9.54 -2.39 -0.02 -5.35 16 25 N -0.39 -11.00 12.06 -49.57 -0.60 -11.60 16 26 O 0.09 2.11 11.20 71.65 0.80 2.91 16 27 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.09 2.80 8.09 -2.39 -0.02 2.78 16 32 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 33 H 0.11 3.03 7.40 -2.39 -0.02 3.01 16 34 H 0.10 3.21 6.92 -2.39 -0.02 3.19 16 35 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 36 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.12 3.79 8.07 -2.39 -0.02 3.77 16 39 H 0.11 2.98 6.44 -2.39 -0.02 2.97 16 40 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.24 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -79.92 363.61 6.72 -73.20 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.98 Total: 18.79 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.45 Total: -9.48 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -2.32 Total: -97.04 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: 0.73 Total: -31.87 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -79.92 6.72 -73.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.350 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds