Wall clock time and date at job start Tue Mar 31 2020 12:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48500 * 109.47358 * 239.99988 * 3 2 1 5 5 H 1.48503 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47112 * 119.99748 * 3 2 1 7 7 C 1.37874 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47320 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47089 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99690 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99457 * 180.02562 * 13 12 11 16 16 H 1.08999 * 115.55393 * 34.33131 * 15 13 12 17 17 C 1.52997 * 117.49714 * 248.61531 * 15 13 12 18 18 C 1.53000 * 60.00347 * 252.51395 * 17 15 13 19 19 H 1.09004 * 117.49237 * 107.48843 * 18 17 15 20 20 C 1.50696 * 117.50175 * 252.51187 * 18 17 15 21 21 C 1.38255 * 119.99951 * 8.34555 * 20 18 17 22 22 C 1.38216 * 120.00129 * 179.78778 * 21 20 18 23 23 C 1.38254 * 119.99880 * 0.44361 * 22 21 20 24 24 C 1.38212 * 119.99749 * 359.81413 * 23 22 21 25 25 N 1.48027 * 119.99862 * 179.97438 * 24 23 22 26 26 O 1.21806 * 119.99714 * 179.97438 * 25 24 23 27 27 O 1.21796 * 119.99908 * 359.97438 * 25 24 23 28 28 C 1.38213 * 120.00250 * 188.62305 * 20 18 17 29 29 H 0.97003 * 119.99681 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47490 * 59.99274 * 9 7 2 31 31 H 1.08998 * 109.46870 * 299.99724 * 9 7 2 32 32 H 1.08998 * 109.47108 * 59.99343 * 10 9 7 33 33 H 1.09007 * 109.46842 * 299.99488 * 10 9 7 34 34 H 1.09009 * 109.46691 * 59.99682 * 11 10 9 35 35 H 1.08998 * 109.47058 * 299.99779 * 11 10 9 36 36 H 0.97000 * 120.00147 * 359.97438 * 12 11 10 37 37 H 1.09002 * 117.49910 * 145.02535 * 17 15 13 38 38 H 1.09002 * 117.49884 * 0.02562 * 17 15 13 39 39 H 1.08003 * 119.99855 * 0.02562 * 21 20 18 40 40 H 1.07998 * 119.99990 * 180.27942 * 22 21 20 41 41 H 1.07996 * 120.00209 * 179.83339 * 23 22 21 42 42 H 1.08003 * 119.99380 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4324 -6.1006 0.0031 13 6 1.9831 -7.3713 0.0032 14 8 0.7907 -7.5928 0.0033 15 6 2.9625 -8.5167 0.0044 16 1 3.8848 -8.3461 0.5597 17 6 3.0464 -9.3756 -1.2589 18 6 2.3900 -9.9356 0.0046 19 1 1.3050 -10.0405 0.0037 20 6 3.1447 -10.9903 0.7719 21 6 4.4496 -11.2932 0.4298 22 6 5.1433 -12.2574 1.1364 23 6 4.5293 -12.9257 2.1794 24 6 3.2231 -12.6267 2.5180 25 7 2.5655 -13.3425 3.6344 26 8 1.4145 -13.0786 3.9330 27 8 3.1754 -14.1953 4.2543 28 6 2.5306 -11.6590 1.8140 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8714 -3.6039 0.8922 33 1 2.8726 -3.6047 -0.8878 34 1 0.8540 -5.0454 -0.8878 35 1 0.8534 -5.0442 0.8922 36 1 3.3860 -5.9233 0.0027 37 1 4.0243 -9.7702 -1.5351 38 1 2.3936 -9.1120 -2.0911 39 1 4.9281 -10.7735 -0.3872 40 1 6.1641 -12.4908 0.8720 41 1 5.0704 -13.6810 2.7298 42 1 1.5099 -11.4253 2.0786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931968550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:06 Heat of formation + Delta-G solvation = -6.647128 kcal Electronic energy + Delta-G solvation = -24422.131557 eV Core-core repulsion = 20563.664590 eV Total energy + Delta-G solvation = -3858.466967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52107 -40.72588 -39.55973 -37.04120 -36.86225 -35.41105 -33.37844 -32.40830 -31.83900 -31.20238 -27.25073 -26.97996 -24.95900 -24.21097 -23.23356 -22.58398 -21.41444 -20.80942 -19.85959 -19.05783 -18.97178 -17.85346 -17.64552 -17.16209 -16.50807 -16.00292 -15.68252 -15.49150 -15.26089 -14.65013 -14.50815 -14.13079 -13.91299 -13.81092 -13.07690 -12.95634 -12.53634 -12.32566 -11.94808 -11.92910 -11.86368 -11.83243 -11.58028 -11.45396 -11.40229 -11.01522 -10.91919 -10.80196 -10.66893 -10.15629 -10.03120 -9.93294 -9.59216 -9.40028 -9.17740 -8.90533 -8.41328 -6.05934 -4.09494 -0.59400 0.32542 0.91493 1.01499 2.34256 2.68580 3.13133 3.28649 3.33824 3.35449 3.45899 3.74676 3.90274 4.13080 4.18335 4.24230 4.32063 4.40141 4.44038 4.48812 4.81773 4.81879 5.02706 5.12930 5.20708 5.29680 5.36569 5.40917 5.46639 5.64544 5.68348 5.69063 5.78249 6.04695 6.07463 6.36683 6.51461 6.73481 6.92735 7.28553 7.57044 7.57908 7.70030 7.92054 8.23365 8.33220 8.96803 9.54845 11.05219 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.001785 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.471696 B =15679.962357 C =16004.349577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.719 5.719 13 C 0.535 3.465 14 O -0.541 6.541 15 C -0.171 4.171 16 H 0.127 0.873 17 C -0.139 4.139 18 C -0.094 4.094 19 H 0.136 0.864 20 C -0.045 4.045 21 C -0.070 4.070 22 C -0.112 4.112 23 C -0.061 4.061 24 C -0.040 4.040 25 N 0.027 4.973 26 O -0.155 6.155 27 O -0.161 6.161 28 C -0.046 4.046 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.894 -27.100 -0.863 30.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.369 5.369 13 C 0.320 3.680 14 O -0.419 6.419 15 C -0.192 4.192 16 H 0.145 0.855 17 C -0.177 4.177 18 C -0.112 4.112 19 H 0.154 0.846 20 C -0.046 4.046 21 C -0.088 4.088 22 C -0.131 4.131 23 C -0.080 4.080 24 C -0.123 4.123 25 N 0.547 4.453 26 O -0.372 6.372 27 O -0.377 6.377 28 C -0.065 4.065 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.174 -26.760 -1.391 29.432 hybrid contribution 0.773 0.936 0.409 1.281 sum 12.946 -25.824 -0.983 28.904 Atomic orbital electron populations 1.69956 1.06056 1.26861 1.50314 1.25037 0.94878 0.99332 0.95227 0.86630 0.79558 0.83056 0.78579 1.20252 1.21235 1.20234 1.21151 0.92936 0.90931 1.51247 0.92702 1.19027 0.93837 0.90833 0.97687 1.21894 0.99791 0.93286 1.00897 1.21695 0.91849 0.85023 1.02122 1.46129 1.10963 1.05662 1.74133 1.19485 0.88504 0.83450 0.76544 1.90718 1.16527 1.84712 1.49937 1.22430 1.01425 0.90682 1.04686 0.85548 1.23182 1.02983 1.00310 0.91183 1.21055 1.00488 0.90248 0.99425 0.84613 1.19109 0.93914 0.96515 0.95029 1.21611 0.93445 0.95413 0.98344 1.21206 1.01026 0.96065 0.94780 1.21101 0.91674 0.98813 0.96454 1.21104 0.95441 1.01514 0.94242 1.43634 1.00857 0.99753 1.01044 1.94581 1.01612 1.69743 1.71290 1.94535 1.65590 1.25883 1.51661 1.20921 1.01551 0.91539 0.92443 0.92822 0.96259 0.96259 0.92702 0.92684 0.91651 0.91629 0.76661 0.87264 0.87027 0.83676 0.83300 0.82909 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 12 N -0.72 -9.30 5.56 -60.29 -0.33 -9.63 16 13 C 0.54 6.96 7.61 -10.98 -0.08 6.88 16 14 O -0.54 -9.31 16.26 5.56 0.09 -9.21 16 15 C -0.17 -1.40 5.83 -91.77 -0.53 -1.93 16 16 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.14 -0.84 9.56 -26.73 -0.26 -1.10 16 18 C -0.09 -0.71 5.55 -91.77 -0.51 -1.22 16 19 H 0.14 1.25 7.67 -51.93 -0.40 0.85 16 20 C -0.04 -0.29 5.61 -104.63 -0.59 -0.88 16 21 C -0.07 -0.30 9.30 -39.58 -0.37 -0.67 16 22 C -0.11 -0.44 10.05 -39.58 -0.40 -0.83 16 23 C -0.06 -0.37 9.56 -39.58 -0.38 -0.75 16 24 C -0.04 -0.35 6.85 -79.95 -0.55 -0.90 16 25 N 0.03 0.31 4.45 33.96 0.15 0.46 16 26 O -0.16 -1.96 18.45 -29.46 -0.54 -2.50 16 27 O -0.16 -1.88 18.45 -29.46 -0.54 -2.42 16 28 C -0.05 -0.37 9.25 -39.59 -0.37 -0.73 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 37 H 0.11 0.34 6.17 -51.93 -0.32 0.02 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.15 0.28 6.02 -52.48 -0.32 -0.04 16 40 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 41 H 0.15 0.72 7.61 -52.49 -0.40 0.32 16 42 H 0.16 1.29 7.61 -52.48 -0.40 0.89 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -34.01 369.76 -10.16 -44.17 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.53 Total: -1.46 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -4.74 Total: -15.38 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.55 Total: -34.93 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.00 Total: -14.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.01 -10.16 -44.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931968550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.523 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds