Wall clock time and date at job start Tue Mar 31 2020 12:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48500 * 109.47358 * 239.99988 * 3 2 1 5 5 H 1.48503 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47112 * 119.99748 * 3 2 1 7 7 C 1.37874 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47320 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47089 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99690 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99457 * 180.02562 * 13 12 11 16 16 H 1.08999 * 115.55393 * 34.33131 * 15 13 12 17 17 C 1.52997 * 117.49714 * 248.61531 * 15 13 12 18 18 C 1.53000 * 60.00347 * 252.51395 * 17 15 13 19 19 H 1.09004 * 117.49237 * 107.48843 * 18 17 15 20 20 C 1.50696 * 117.50175 * 252.51187 * 18 17 15 21 21 C 1.38255 * 119.99951 * 8.34555 * 20 18 17 22 22 C 1.38216 * 120.00129 * 179.78778 * 21 20 18 23 23 C 1.38254 * 119.99880 * 0.44361 * 22 21 20 24 24 C 1.38212 * 119.99749 * 359.81413 * 23 22 21 25 25 N 1.48027 * 119.99862 * 179.97438 * 24 23 22 26 26 O 1.21806 * 119.99714 * 179.97438 * 25 24 23 27 27 O 1.21796 * 119.99908 * 359.97438 * 25 24 23 28 28 C 1.38213 * 120.00250 * 188.62305 * 20 18 17 29 29 H 0.97003 * 119.99681 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47490 * 59.99274 * 9 7 2 31 31 H 1.08998 * 109.46870 * 299.99724 * 9 7 2 32 32 H 1.08998 * 109.47108 * 59.99343 * 10 9 7 33 33 H 1.09007 * 109.46842 * 299.99488 * 10 9 7 34 34 H 1.09009 * 109.46691 * 59.99682 * 11 10 9 35 35 H 1.08998 * 109.47058 * 299.99779 * 11 10 9 36 36 H 0.97000 * 120.00147 * 359.97438 * 12 11 10 37 37 H 1.09002 * 117.49910 * 145.02535 * 17 15 13 38 38 H 1.09002 * 117.49884 * 0.02562 * 17 15 13 39 39 H 1.08003 * 119.99855 * 0.02562 * 21 20 18 40 40 H 1.07998 * 119.99990 * 180.27942 * 22 21 20 41 41 H 1.07996 * 120.00209 * 179.83339 * 23 22 21 42 42 H 1.08003 * 119.99380 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 7 2.4324 -6.1006 0.0031 13 6 1.9831 -7.3713 0.0032 14 8 0.7907 -7.5928 0.0033 15 6 2.9625 -8.5167 0.0044 16 1 3.8848 -8.3461 0.5597 17 6 3.0464 -9.3756 -1.2589 18 6 2.3900 -9.9356 0.0046 19 1 1.3050 -10.0405 0.0037 20 6 3.1447 -10.9903 0.7719 21 6 4.4496 -11.2932 0.4298 22 6 5.1433 -12.2574 1.1364 23 6 4.5293 -12.9257 2.1794 24 6 3.2231 -12.6267 2.5180 25 7 2.5655 -13.3425 3.6344 26 8 1.4145 -13.0786 3.9330 27 8 3.1754 -14.1953 4.2543 28 6 2.5306 -11.6590 1.8140 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8714 -3.6039 0.8922 33 1 2.8726 -3.6047 -0.8878 34 1 0.8540 -5.0454 -0.8878 35 1 0.8534 -5.0442 0.8922 36 1 3.3860 -5.9233 0.0027 37 1 4.0243 -9.7702 -1.5351 38 1 2.3936 -9.1120 -2.0911 39 1 4.9281 -10.7735 -0.3872 40 1 6.1641 -12.4908 0.8720 41 1 5.0704 -13.6810 2.7298 42 1 1.5099 -11.4253 2.0786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931968550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:04 Heat of formation + Delta-G solvation = -27.001799 kcal Electronic energy + Delta-G solvation = -24423.014202 eV Core-core repulsion = 20563.664590 eV Total energy + Delta-G solvation = -3859.349611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.30207 -41.43581 -40.38533 -37.81582 -37.71037 -36.80536 -35.20534 -33.10259 -32.88573 -32.22203 -28.89928 -27.69410 -26.11741 -24.94723 -24.11457 -23.58994 -22.34242 -22.06913 -20.98970 -19.79813 -19.65998 -18.66142 -18.60764 -18.38655 -17.64232 -17.00122 -16.71611 -16.48243 -16.34479 -16.04848 -15.37605 -15.11761 -14.93719 -14.36010 -14.27535 -13.81211 -13.78309 -13.52482 -13.45970 -13.01262 -12.77882 -12.72528 -12.57054 -12.43849 -12.40981 -12.37589 -12.34682 -11.96731 -11.69306 -11.64395 -11.57119 -11.27100 -10.91695 -10.56239 -10.55902 -10.14270 -10.01325 -8.20363 -6.32236 -1.28898 -0.12018 0.26495 0.34484 1.41300 1.43917 1.44312 1.52216 2.05542 2.26801 2.41929 2.85603 3.13285 3.15855 3.46589 3.55564 3.71791 3.76946 3.83167 3.90090 3.97798 4.10059 4.17478 4.20587 4.32387 4.52581 4.64593 4.69421 4.77216 4.86745 4.91807 4.96944 4.99370 5.05110 5.11649 5.15301 5.26104 5.41340 5.50325 5.51157 5.68670 5.82701 6.20484 6.39544 6.55797 6.85348 7.23009 7.37546 8.91435 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.001785 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.471696 B =15679.962357 C =16004.349577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.708 5.708 13 C 0.529 3.471 14 O -0.593 6.593 15 C -0.174 4.174 16 H 0.160 0.840 17 C -0.112 4.112 18 C -0.102 4.102 19 H 0.105 0.895 20 C -0.047 4.047 21 C -0.051 4.051 22 C -0.096 4.096 23 C -0.060 4.060 24 C -0.062 4.062 25 N 0.029 4.971 26 O -0.211 6.211 27 O -0.159 6.159 28 C -0.064 4.064 29 H 0.263 0.737 30 H -0.008 1.008 31 H -0.011 1.011 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.418 0.582 37 H 0.155 0.845 38 H 0.100 0.900 39 H 0.185 0.815 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.995 -27.520 -2.420 32.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.004 3.996 12 N -0.360 5.360 13 C 0.317 3.683 14 O -0.474 6.474 15 C -0.195 4.195 16 H 0.178 0.822 17 C -0.149 4.149 18 C -0.121 4.121 19 H 0.123 0.877 20 C -0.048 4.048 21 C -0.068 4.068 22 C -0.114 4.114 23 C -0.079 4.079 24 C -0.145 4.145 25 N 0.543 4.457 26 O -0.417 6.417 27 O -0.379 6.379 28 C -0.084 4.084 29 H 0.072 0.928 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.256 0.744 37 H 0.173 0.827 38 H 0.119 0.881 39 H 0.202 0.798 40 H 0.209 0.791 41 H 0.184 0.816 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.243 -27.168 -2.939 32.312 hybrid contribution -0.765 1.024 0.827 1.523 sum 16.478 -26.144 -2.111 30.976 Atomic orbital electron populations 1.70114 1.07982 1.27859 1.51602 1.26056 0.95767 1.03664 0.94797 0.85452 0.78163 0.77827 0.79310 1.18874 1.21300 1.19024 1.21655 0.93794 0.91942 1.50551 0.91366 1.18956 0.94509 0.93141 0.94969 1.21587 0.98372 0.91617 1.02264 1.21228 0.92062 0.85777 1.00485 1.45894 1.11274 1.04831 1.73956 1.20390 0.88772 0.84310 0.74861 1.90703 1.19212 1.85442 1.52048 1.22413 1.01077 0.88594 1.07401 0.82233 1.23392 1.04505 0.97465 0.89559 1.20918 0.99437 0.90357 1.01366 0.87651 1.19043 0.95054 0.96231 0.94463 1.22051 0.91812 0.94576 0.98384 1.21708 1.02452 0.94413 0.92829 1.21481 0.90281 0.99077 0.97056 1.21292 0.96669 1.02500 0.94060 1.44075 1.00613 0.99524 1.01491 1.94575 1.02923 1.71171 1.72991 1.94481 1.65244 1.26079 1.52140 1.20903 1.01183 0.92558 0.93727 0.92838 0.98981 0.99220 0.91350 0.91017 0.93251 0.93666 0.74437 0.82745 0.88123 0.79809 0.79051 0.81632 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.13 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 N -0.71 -17.47 5.56 -463.05 -2.57 -20.04 16 13 C 0.53 13.48 7.61 87.66 0.67 14.15 16 14 O -0.59 -21.33 16.26 -3.02 -0.05 -21.38 16 15 C -0.17 -2.37 5.83 -11.54 -0.07 -2.44 16 16 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 17 C -0.11 -0.92 9.56 30.59 0.29 -0.63 16 18 C -0.10 -1.40 5.55 -11.54 -0.06 -1.46 16 19 H 0.11 2.11 7.67 -2.38 -0.02 2.09 16 20 C -0.05 -0.51 5.61 -19.87 -0.11 -0.62 16 21 C -0.05 -0.16 9.30 22.27 0.21 0.05 16 22 C -0.10 -0.22 10.05 22.27 0.22 0.00 16 23 C -0.06 -0.55 9.56 22.27 0.21 -0.33 16 24 C -0.06 -1.06 6.85 36.37 0.25 -0.81 16 25 N 0.03 0.71 4.45 -46.46 -0.21 0.50 16 26 O -0.21 -5.98 18.45 18.88 0.35 -5.63 16 27 O -0.16 -3.81 18.45 18.89 0.35 -3.46 16 28 C -0.06 -1.07 9.25 22.27 0.21 -0.86 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 37 H 0.15 -0.13 6.17 -2.39 -0.01 -0.14 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.18 -0.80 6.02 -2.91 -0.02 -0.82 16 40 H 0.19 -1.06 8.06 -2.91 -0.02 -1.09 16 41 H 0.17 1.06 7.61 -2.91 -0.02 1.04 16 42 H 0.14 2.68 7.61 -2.91 -0.02 2.66 16 Total: -1.00 -80.73 369.76 3.76 -76.97 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.27 Total: 4.17 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.31 Total: -19.72 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.49 Total: -76.15 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: 0.65 Total: -30.48 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -80.73 3.76 -76.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931968550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.965 kcal (2) G-P(sol) polarization free energy of solvation -80.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds