Wall clock time and date at job start Tue Mar 31 2020 12:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99600 * 180.02562 * 13 12 11 16 16 H 1.08995 * 115.55195 * 34.41368 * 15 13 12 17 17 C 1.53002 * 117.49615 * 248.74506 * 15 13 12 18 18 C 1.52999 * 117.49775 * 180.08723 * 15 13 12 19 19 H 1.08999 * 117.50186 * 214.97873 * 18 15 13 20 20 C 1.50703 * 117.49872 * 359.97438 * 18 15 13 21 21 C 1.38258 * 119.99797 * 59.72417 * 20 18 15 22 22 C 1.38214 * 119.99818 * 179.76507 * 21 20 18 23 23 C 1.38258 * 120.00053 * 0.49089 * 22 21 20 24 24 C 1.38207 * 119.99892 * 359.78679 * 23 22 21 25 25 N 1.48027 * 120.00339 * 179.97438 * 24 23 22 26 26 O 1.21792 * 120.00204 * 179.97438 * 25 24 23 27 27 O 1.21794 * 119.99574 * 359.97438 * 25 24 23 28 28 C 1.38213 * 120.00024 * 240.00163 * 20 18 15 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 35 35 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 36 36 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 37 37 H 1.09007 * 117.49920 * 0.02562 * 17 15 13 38 38 H 1.08997 * 117.49732 * 145.02094 * 17 15 13 39 39 H 1.07998 * 119.99948 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.00122 * 180.25503 * 22 21 20 41 41 H 1.07995 * 119.99999 * 179.76660 * 23 22 21 42 42 H 1.07996 * 120.00326 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4320 -6.1006 -0.0213 13 6 1.9827 -7.3713 -0.0269 14 8 0.7903 -7.5928 -0.0280 15 6 2.9619 -8.5168 -0.0307 16 1 3.8836 -8.3492 0.5266 17 6 3.0482 -9.3682 -1.2990 18 6 2.3894 -9.9356 -0.0391 19 1 2.9346 -10.7016 0.5124 20 6 0.8894 -10.0807 -0.0423 21 6 0.1450 -9.5409 -1.0748 22 6 -1.2303 -9.6782 -1.0803 23 6 -1.8625 -10.3464 -0.0481 24 6 -1.1188 -10.8810 0.9869 25 7 -1.7955 -11.5959 2.0924 26 8 -1.1401 -12.0674 3.0042 27 8 -3.0079 -11.7127 2.0900 28 6 0.2575 -10.7483 0.9898 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 0.8531 -5.0490 0.8724 35 1 0.8537 -5.0406 -0.9075 36 1 3.3857 -5.9235 -0.0201 37 1 2.3968 -9.0996 -2.1308 38 1 4.0264 -9.7612 -1.5758 39 1 0.6385 -9.0157 -1.8792 40 1 -1.8115 -9.2602 -1.8888 41 1 -2.9374 -10.4504 -0.0504 42 1 0.8385 -11.1657 1.7988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931968551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:10 Heat of formation + Delta-G solvation = 3.258729 kcal Electronic energy + Delta-G solvation = -25388.798307 eV Core-core repulsion = 21530.760891 eV Total energy + Delta-G solvation = -3858.037417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22988 -40.86016 -39.10494 -36.93264 -36.60421 -35.43102 -33.43933 -32.00667 -31.61168 -31.09961 -27.25414 -26.65058 -24.80748 -24.15879 -22.96713 -22.58679 -21.27449 -20.85650 -19.93972 -18.76328 -18.69975 -17.57805 -17.50507 -16.72149 -16.55385 -15.88940 -15.60668 -15.40027 -14.90842 -14.60231 -14.47124 -14.13317 -13.85958 -13.65795 -13.07038 -12.78051 -12.36231 -12.20811 -11.96231 -11.85750 -11.70741 -11.61017 -11.35848 -11.21570 -11.20854 -10.99407 -10.94894 -10.84239 -10.65901 -10.22310 -9.97528 -9.57600 -9.47556 -9.21470 -8.95806 -8.82166 -8.44278 -6.08755 -4.12307 -0.18268 0.77493 1.31519 1.36982 2.31764 3.05208 3.16513 3.25642 3.32529 3.35030 3.52311 3.93706 4.24463 4.31813 4.37200 4.38511 4.46978 4.56790 4.68874 4.81529 4.85880 5.12974 5.19263 5.27170 5.29687 5.41776 5.46715 5.58933 5.59853 5.63481 5.83196 6.01010 6.02342 6.12209 6.31123 6.42211 6.46877 6.68796 6.88816 7.51549 7.54659 7.59177 7.66229 7.89144 8.17115 8.30202 8.94231 9.52356 11.02503 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002333 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.483822 B =11998.097449 C =12913.688157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.717 5.717 13 C 0.531 3.469 14 O -0.535 6.535 15 C -0.178 4.178 16 H 0.132 0.868 17 C -0.144 4.144 18 C -0.088 4.088 19 H 0.128 0.872 20 C -0.045 4.045 21 C 0.005 3.995 22 C -0.125 4.125 23 C -0.051 4.051 24 C -0.056 4.056 25 N 0.035 4.965 26 O -0.170 6.170 27 O -0.169 6.169 28 C -0.049 4.049 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.400 0.600 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -23.712 -3.984 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.317 3.683 14 O -0.413 6.413 15 C -0.199 4.199 16 H 0.150 0.850 17 C -0.181 4.181 18 C -0.107 4.107 19 H 0.146 0.854 20 C -0.046 4.046 21 C -0.013 4.013 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.139 4.139 25 N 0.552 4.448 26 O -0.385 6.385 27 O -0.384 6.384 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.073 -23.370 -4.491 24.332 hybrid contribution 0.758 1.142 0.459 1.446 sum 5.831 -22.228 -4.031 23.331 Atomic orbital electron populations 1.69963 1.06086 1.26787 1.50383 1.25035 0.94867 0.99362 0.95187 0.86572 0.79806 0.83366 0.78125 1.20624 1.21146 1.19876 1.21187 0.92977 0.90907 1.51176 0.92642 1.19021 0.93811 0.90876 0.97613 1.21892 0.99789 0.93286 1.00917 1.21674 0.91824 0.85085 1.01989 1.46217 1.11006 1.05744 1.73693 1.19635 0.88640 0.83518 0.76480 1.90711 1.16567 1.83868 1.50184 1.22427 1.01554 0.91054 1.04872 0.85041 1.23197 1.03174 1.00663 0.91042 1.21018 0.91252 0.95621 1.02766 0.85363 1.18748 0.93767 0.97917 0.94139 1.21255 0.93839 0.89891 0.96295 1.21053 0.94677 0.99768 0.98879 1.20988 1.01348 0.93542 0.91101 1.20900 0.93268 1.07787 0.91913 1.43635 1.01004 0.98720 1.01462 1.94512 1.65877 1.49587 1.28505 1.94520 0.96394 1.63462 1.84017 1.20606 0.91392 0.96435 0.98404 0.92856 0.96317 0.96333 0.92697 0.92687 0.91726 0.91723 0.76648 0.87671 0.86737 0.84951 0.83904 0.83428 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.22 5.27 -26.74 -0.14 -2.36 16 11 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16 12 N -0.72 -8.70 5.56 -60.30 -0.34 -9.03 16 13 C 0.53 6.26 7.46 -10.98 -0.08 6.18 16 14 O -0.53 -7.90 11.68 5.56 0.06 -7.83 16 15 C -0.18 -1.34 6.19 -91.77 -0.57 -1.91 16 16 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 17 C -0.14 -0.79 9.58 -26.69 -0.26 -1.05 16 18 C -0.09 -0.62 6.04 -91.73 -0.55 -1.17 16 19 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 20 C -0.04 -0.43 4.38 -104.62 -0.46 -0.89 16 21 C 0.01 0.05 6.16 -39.58 -0.24 -0.19 16 22 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 23 C -0.05 -0.54 9.56 -39.59 -0.38 -0.92 16 24 C -0.06 -0.68 6.85 -79.94 -0.55 -1.23 16 25 N 0.03 0.49 4.45 33.96 0.15 0.64 16 26 O -0.17 -2.48 18.45 -29.46 -0.54 -3.02 16 27 O -0.17 -2.49 18.45 -29.46 -0.54 -3.03 16 28 C -0.05 -0.53 9.25 -39.58 -0.37 -0.89 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 3.80 8.47 -40.82 -0.35 3.46 16 37 H 0.11 0.62 6.19 -51.93 -0.32 0.29 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.13 1.14 5.77 -52.49 -0.30 0.84 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.15 1.39 7.61 -52.49 -0.40 0.99 16 42 H 0.15 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -33.19 361.77 -10.14 -43.33 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.54 Total: -0.08 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -4.56 Total: -16.83 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.55 Total: -34.06 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.02 Total: -13.89 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.19 -10.14 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931968551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.590 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds