Wall clock time and date at job start Tue Mar 31 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99600 * 180.02562 * 13 12 11 16 16 H 1.08995 * 115.55195 * 34.41368 * 15 13 12 17 17 C 1.53002 * 117.49615 * 248.74506 * 15 13 12 18 18 C 1.52999 * 117.49775 * 180.08723 * 15 13 12 19 19 H 1.08999 * 117.50186 * 214.97873 * 18 15 13 20 20 C 1.50703 * 117.49872 * 359.97438 * 18 15 13 21 21 C 1.38258 * 119.99797 * 59.72417 * 20 18 15 22 22 C 1.38214 * 119.99818 * 179.76507 * 21 20 18 23 23 C 1.38258 * 120.00053 * 0.49089 * 22 21 20 24 24 C 1.38207 * 119.99892 * 359.78679 * 23 22 21 25 25 N 1.48027 * 120.00339 * 179.97438 * 24 23 22 26 26 O 1.21792 * 120.00204 * 179.97438 * 25 24 23 27 27 O 1.21794 * 119.99574 * 359.97438 * 25 24 23 28 28 C 1.38213 * 120.00024 * 240.00163 * 20 18 15 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 35 35 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 36 36 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 37 37 H 1.09007 * 117.49920 * 0.02562 * 17 15 13 38 38 H 1.08997 * 117.49732 * 145.02094 * 17 15 13 39 39 H 1.07998 * 119.99948 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.00122 * 180.25503 * 22 21 20 41 41 H 1.07995 * 119.99999 * 179.76660 * 23 22 21 42 42 H 1.07996 * 120.00326 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4320 -6.1006 -0.0213 13 6 1.9827 -7.3713 -0.0269 14 8 0.7903 -7.5928 -0.0280 15 6 2.9619 -8.5168 -0.0307 16 1 3.8836 -8.3492 0.5266 17 6 3.0482 -9.3682 -1.2990 18 6 2.3894 -9.9356 -0.0391 19 1 2.9346 -10.7016 0.5124 20 6 0.8894 -10.0807 -0.0423 21 6 0.1450 -9.5409 -1.0748 22 6 -1.2303 -9.6782 -1.0803 23 6 -1.8625 -10.3464 -0.0481 24 6 -1.1188 -10.8810 0.9869 25 7 -1.7955 -11.5959 2.0924 26 8 -1.1401 -12.0674 3.0042 27 8 -3.0079 -11.7127 2.0900 28 6 0.2575 -10.7483 0.9898 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 0.8531 -5.0490 0.8724 35 1 0.8537 -5.0406 -0.9075 36 1 3.3857 -5.9235 -0.0201 37 1 2.3968 -9.0996 -2.1308 38 1 4.0264 -9.7612 -1.5758 39 1 0.6385 -9.0157 -1.8792 40 1 -1.8115 -9.2602 -1.8888 41 1 -2.9374 -10.4504 -0.0504 42 1 0.8385 -11.1657 1.7988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931968551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:09 Heat of formation + Delta-G solvation = -15.664140 kcal Electronic energy + Delta-G solvation = -25389.618864 eV Core-core repulsion = 21530.760891 eV Total energy + Delta-G solvation = -3858.857974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.26672 -41.64981 -40.00396 -37.76423 -37.65551 -36.70475 -35.19915 -33.15548 -32.76336 -32.11057 -28.87741 -27.62228 -26.04100 -24.91146 -24.04136 -23.67245 -22.32601 -22.06087 -20.98495 -19.80552 -19.59626 -18.63605 -18.55066 -18.29072 -17.51844 -16.82558 -16.70738 -16.51852 -16.38944 -15.74219 -15.42329 -15.04099 -14.92433 -14.41431 -14.32436 -13.84350 -13.77189 -13.57547 -13.39948 -12.90589 -12.76637 -12.73644 -12.56948 -12.40676 -12.34580 -12.31277 -12.27089 -11.94561 -11.69602 -11.56268 -11.50703 -11.25162 -10.94973 -10.57734 -10.32605 -10.02519 -9.64739 -8.21951 -6.33524 -1.17392 0.01712 0.37044 0.41574 1.40477 1.41587 1.49138 1.52522 2.16850 2.35400 2.40989 2.94264 3.12121 3.26747 3.54390 3.67803 3.77569 3.80417 3.88028 3.97899 4.09482 4.13458 4.19194 4.21832 4.43394 4.53135 4.68698 4.78751 4.82826 4.86486 4.92355 4.98039 5.02583 5.10345 5.14708 5.18165 5.33488 5.43819 5.51545 5.58511 5.68046 5.81861 6.19747 6.48647 6.60319 6.84515 7.27397 7.36533 8.90085 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002333 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.483822 B =11998.097449 C =12913.688157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.133 3.867 12 N -0.710 5.710 13 C 0.525 3.475 14 O -0.570 6.570 15 C -0.181 4.181 16 H 0.161 0.839 17 C -0.121 4.121 18 C -0.095 4.095 19 H 0.155 0.845 20 C -0.046 4.046 21 C 0.002 3.998 22 C -0.129 4.129 23 C -0.060 4.060 24 C -0.076 4.076 25 N 0.036 4.964 26 O -0.183 6.183 27 O -0.194 6.194 28 C -0.057 4.057 29 H 0.263 0.737 30 H -0.012 1.012 31 H -0.008 1.008 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.415 0.585 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -23.963 -4.997 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.140 4.140 11 C 0.009 3.991 12 N -0.361 5.361 13 C 0.313 3.687 14 O -0.451 6.451 15 C -0.202 4.202 16 H 0.179 0.821 17 C -0.158 4.158 18 C -0.113 4.113 19 H 0.172 0.828 20 C -0.047 4.047 21 C -0.016 4.016 22 C -0.148 4.148 23 C -0.080 4.080 24 C -0.160 4.160 25 N 0.548 4.452 26 O -0.397 6.397 27 O -0.404 6.404 28 C -0.076 4.076 29 H 0.072 0.928 30 H 0.007 0.993 31 H 0.011 0.989 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.252 0.748 37 H 0.119 0.881 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.171 0.829 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.510 -23.651 -5.496 25.730 hybrid contribution -0.307 1.234 0.713 1.457 sum 8.203 -22.418 -4.784 24.346 Atomic orbital electron populations 1.70111 1.07971 1.27807 1.51702 1.26028 0.95731 1.03589 0.94786 0.85426 0.78690 0.78298 0.78514 1.19697 1.21177 1.18403 1.21691 0.93759 0.92026 1.50424 0.91497 1.18936 0.94454 0.93111 0.94890 1.21585 0.98371 0.91951 1.02068 1.21151 0.91923 0.85627 1.00391 1.45995 1.11134 1.05048 1.73956 1.20444 0.89053 0.84064 0.75096 1.90703 1.18492 1.84369 1.51487 1.22438 1.01321 0.89077 1.07316 0.82112 1.23383 1.04357 0.98226 0.89840 1.21220 0.89589 0.95901 1.04632 0.82765 1.19095 0.95581 0.96741 0.93277 1.21553 0.93994 0.89367 0.96692 1.21362 0.95189 0.99254 0.98988 1.21185 1.01833 0.93768 0.91178 1.21163 0.94117 1.08902 0.91810 1.43942 1.00907 0.98523 1.01790 1.94479 1.65768 1.50111 1.29297 1.94499 0.97030 1.64382 1.84491 1.20842 0.90835 0.96772 0.99194 0.92820 0.99349 0.98939 0.91173 0.91657 0.93941 0.92983 0.74775 0.88098 0.83426 0.83746 0.81939 0.82858 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.13 4.23 5.67 86.38 0.49 4.72 16 12 N -0.71 -15.80 5.56 -463.06 -2.57 -18.37 16 13 C 0.53 11.26 7.46 87.66 0.65 11.92 16 14 O -0.57 -16.31 11.68 -3.01 -0.04 -16.35 16 15 C -0.18 -2.02 6.19 -11.54 -0.07 -2.09 16 16 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 17 C -0.12 -0.79 9.58 30.62 0.29 -0.50 16 18 C -0.10 -0.99 6.04 -11.51 -0.07 -1.06 16 19 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 20 C -0.05 -0.81 4.38 -19.86 -0.09 -0.89 16 21 C 0.00 0.04 6.16 22.27 0.14 0.18 16 22 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 23 C -0.06 -1.32 9.56 22.27 0.21 -1.11 16 24 C -0.08 -1.91 6.85 36.37 0.25 -1.66 16 25 N 0.04 1.05 4.45 -46.46 -0.21 0.84 16 26 O -0.18 -5.49 18.45 18.90 0.35 -5.14 16 27 O -0.19 -5.97 18.45 18.89 0.35 -5.62 16 28 C -0.06 -1.19 9.25 22.27 0.21 -0.99 16 29 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 30 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 6.60 8.47 -92.71 -0.79 5.81 16 37 H 0.10 0.80 6.19 -2.38 -0.01 0.78 16 38 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.14 2.22 5.77 -2.91 -0.02 2.20 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.15 3.03 7.61 -2.91 -0.02 3.00 16 42 H 0.16 2.81 7.61 -2.91 -0.02 2.79 16 Total: -1.00 -74.63 361.77 3.70 -70.92 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.27 Total: 9.77 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.24 Total: -24.85 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -2.49 Total: -73.75 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.66 Total: -27.10 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.63 3.70 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931968551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.258 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds