Wall clock time and date at job start Tue Mar 31 2020 13:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.39740 * 2 1 4 4 O 1.21274 * 119.99894 * 354.89776 * 3 2 1 5 5 N 1.34772 * 120.00054 * 174.90242 * 3 2 1 6 6 C 1.46496 * 120.00421 * 185.01632 * 5 3 2 7 7 C 1.50701 * 109.47625 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99601 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00111 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00357 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99452 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00263 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99999 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00165 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.46884 * 90.00275 * 14 12 10 16 16 H 1.48493 * 109.47013 * 210.00283 * 14 12 10 17 17 H 1.48502 * 109.46999 * 330.00121 * 14 12 10 18 18 C 1.53062 * 109.43993 * 240.10823 * 2 1 3 19 19 C 1.53409 * 108.31580 * 288.09690 * 18 2 1 20 20 O 1.42831 * 108.37073 * 295.30691 * 19 18 2 21 21 C 1.35842 * 117.84360 * 49.26775 * 20 19 18 22 22 C 1.39147 * 118.49514 * 162.69712 * 21 20 19 23 23 C 1.37963 * 120.21086 * 179.76562 * 22 21 20 24 24 C 1.38296 * 119.95902 * 359.95696 * 23 22 21 25 25 C 1.38097 * 119.98617 * 0.09517 * 24 23 22 26 26 C 1.38370 * 121.80501 * 342.59762 * 21 20 19 27 27 H 1.08998 * 109.47503 * 300.11623 * 1 2 3 28 28 H 1.08997 * 109.46913 * 60.11702 * 1 2 3 29 29 H 1.08998 * 109.47131 * 180.11368 * 1 2 3 30 30 H 0.97005 * 120.00235 * 5.01760 * 5 3 2 31 31 H 1.08995 * 109.47420 * 300.00723 * 6 5 3 32 32 H 1.09007 * 109.46411 * 60.00030 * 6 5 3 33 33 H 0.96999 * 120.00090 * 359.97438 * 9 7 6 34 34 H 0.96994 * 120.00386 * 179.97438 * 13 12 10 35 35 H 1.08991 * 109.69181 * 168.39445 * 18 2 1 36 36 H 1.08995 * 109.72900 * 47.82171 * 18 2 1 37 37 H 1.08997 * 109.68559 * 175.58482 * 19 18 2 38 38 H 1.09001 * 109.68640 * 55.02149 * 19 18 2 39 39 H 1.07994 * 119.89730 * 359.76561 * 22 21 20 40 40 H 1.08003 * 120.02459 * 180.23476 * 23 22 21 41 41 H 1.07996 * 120.00315 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.84683 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4215 0.0000 4 8 1.2451 2.3409 -0.0934 5 7 3.3508 1.6710 0.1037 6 6 3.8290 3.0513 0.2144 7 6 5.3326 3.0555 0.3160 8 8 5.9445 2.0084 0.2982 9 7 5.9972 4.2226 0.4277 10 6 7.3651 4.2265 0.5196 11 1 7.9100 3.2942 0.5029 12 6 8.0503 5.4298 0.6342 13 7 9.3615 5.4336 0.7217 14 14 7.1078 7.0424 0.6623 15 1 6.7642 7.3904 2.0644 16 1 7.9487 8.1174 0.0774 17 1 5.8614 6.9011 -0.1324 18 6 2.0394 -0.7193 -1.2513 19 6 1.7732 -2.2211 -1.0861 20 8 2.5571 -2.6995 0.0078 21 6 2.5070 -2.0066 1.1752 22 6 2.9509 -2.6304 2.3371 23 6 2.9203 -1.9579 3.5413 24 6 2.4481 -0.6591 3.5951 25 6 2.0058 -0.0372 2.4442 26 6 2.0316 -0.7084 1.2328 27 1 -0.3634 0.5156 0.8889 28 1 -0.3633 0.5120 -0.8910 29 1 -0.3633 -1.0276 0.0020 30 1 3.9846 0.9366 0.1050 31 1 3.5233 3.6137 -0.6678 32 1 3.4030 3.5130 1.1053 33 1 5.5078 5.0600 0.4423 34 1 9.8399 6.2735 0.8014 35 1 3.1095 -0.5462 -1.3644 36 1 1.5122 -0.3473 -2.1298 37 1 2.0562 -2.7466 -1.9981 38 1 0.7157 -2.3861 -0.8797 39 1 3.3205 -3.6443 2.2961 40 1 3.2691 -2.4437 4.4406 41 1 2.4242 -0.1318 4.5373 42 1 1.6379 0.9772 2.4887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935962674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:23 Heat of formation + Delta-G solvation = -84.611226 kcal Electronic energy + Delta-G solvation = -26968.624397 eV Core-core repulsion = 23106.776653 eV Total energy + Delta-G solvation = -3861.847744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48260 -39.47823 -38.34950 -37.62830 -35.30628 -34.58564 -33.77966 -31.81566 -30.88859 -30.45331 -28.44953 -28.21253 -25.26227 -24.25449 -23.59796 -22.72872 -20.85971 -19.71990 -19.26369 -18.62879 -18.12297 -17.32042 -16.45198 -16.38820 -15.88323 -15.43100 -15.22220 -15.06643 -14.89799 -14.44094 -14.20689 -13.89036 -13.80264 -13.58973 -13.44230 -13.14925 -12.69978 -12.53186 -12.30073 -12.19392 -12.13930 -12.08520 -12.02453 -11.60506 -11.25706 -11.23499 -10.89522 -10.78093 -10.66139 -10.07769 -9.77156 -9.71384 -8.98600 -8.86437 -8.78527 -8.31927 -8.28963 -6.41966 -3.94612 1.16610 1.33421 2.60298 2.97802 3.02383 3.08606 3.10802 3.20069 3.54317 3.63489 4.02035 4.29160 4.32397 4.43615 4.51304 4.65471 4.77903 4.96805 4.97513 5.02005 5.12482 5.19221 5.26576 5.31637 5.35959 5.55462 5.56981 5.64520 5.67698 5.73826 5.74816 5.77243 5.89147 6.01747 6.16598 6.32759 6.44322 6.51590 6.64851 7.27946 7.42380 7.67116 7.98706 8.27407 8.44250 8.80475 9.28315 9.61902 10.70242 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.003450 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.268509 B = 8112.835100 C = 8579.936472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C 0.528 3.472 4 O -0.544 6.544 5 N -0.701 5.701 6 C 0.105 3.895 7 C 0.437 3.563 8 O -0.576 6.576 9 N -0.576 5.576 10 C -0.310 4.310 11 H 0.122 0.878 12 C 0.046 3.954 13 N -0.874 5.874 14 Si 0.879 3.121 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.267 1.267 18 C -0.153 4.153 19 C 0.064 3.936 20 O -0.313 6.313 21 C 0.141 3.859 22 C -0.150 4.150 23 C -0.081 4.081 24 C -0.148 4.148 25 C -0.071 4.071 26 C -0.154 4.154 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.374 0.626 34 H 0.276 0.724 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.399 -12.921 0.441 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C 0.313 3.687 4 O -0.422 6.422 5 N -0.354 5.354 6 C -0.023 4.023 7 C 0.223 3.777 8 O -0.460 6.460 9 N -0.214 5.214 10 C -0.438 4.438 11 H 0.139 0.861 12 C -0.158 4.158 13 N -0.513 5.513 14 Si 0.705 3.295 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.193 1.193 18 C -0.191 4.191 19 C -0.011 4.011 20 O -0.227 6.227 21 C 0.096 3.904 22 C -0.168 4.168 23 C -0.099 4.099 24 C -0.167 4.167 25 C -0.089 4.089 26 C -0.155 4.155 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.252 0.748 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.207 0.793 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.186 -12.984 0.348 22.348 hybrid contribution -0.233 1.420 -0.011 1.439 sum -18.419 -11.564 0.337 21.750 Atomic orbital electron populations 1.21740 0.90814 1.01741 1.03769 1.19642 0.97951 0.92175 0.93734 1.20106 0.82187 0.90270 0.76170 1.90683 1.55493 1.45923 1.50086 1.45683 1.07328 1.09355 1.73072 1.21001 0.94104 0.84029 1.03118 1.19615 0.88035 0.84910 0.85104 1.90554 1.68654 1.31110 1.55678 1.42119 1.07991 1.06262 1.65021 1.19442 0.79311 0.96958 1.48128 0.86082 1.25057 0.95544 0.98115 0.97128 1.69615 1.06098 1.27795 1.47785 0.86677 0.79958 0.83771 0.79125 1.19387 1.19956 1.19272 1.22372 1.03611 0.95809 0.97315 1.23010 0.95379 0.93924 0.88752 1.86011 1.65469 1.52128 1.19126 1.18624 0.96366 0.89614 0.85829 1.20575 1.05143 1.00990 0.90120 1.20962 0.97382 0.94489 0.97085 1.21015 1.01706 0.95514 0.98429 1.20910 0.97224 0.99311 0.91473 1.19409 1.07106 0.93999 0.94983 0.91477 0.91152 0.92033 0.74850 0.89643 0.89785 0.79289 0.91375 0.89447 0.88820 0.87017 0.91314 0.85122 0.85307 0.85716 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 7.53 37.16 0.28 -1.00 16 2 C -0.03 -0.38 0.51 -156.75 -0.08 -0.46 16 3 C 0.53 7.93 5.21 -10.99 -0.06 7.87 16 4 O -0.54 -9.42 15.98 5.56 0.09 -9.33 16 5 N -0.70 -11.42 5.22 -61.47 -0.32 -11.74 16 6 C 0.11 1.83 6.16 -5.20 -0.03 1.80 16 7 C 0.44 9.67 7.85 -10.99 -0.09 9.59 16 8 O -0.58 -14.73 15.24 5.55 0.08 -14.65 16 9 N -0.58 -13.42 5.09 -10.97 -0.06 -13.47 16 10 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 13 N -0.87 -24.96 13.96 55.50 0.77 -24.19 16 14 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 18 C -0.15 -1.55 4.91 -26.49 -0.13 -1.68 16 19 C 0.06 0.56 6.96 37.37 0.26 0.82 16 20 O -0.31 -3.66 10.27 -19.25 -0.20 -3.86 16 21 C 0.14 1.76 6.47 -39.20 -0.25 1.50 16 22 C -0.15 -1.72 9.94 -39.34 -0.39 -2.11 16 23 C -0.08 -0.87 10.04 -39.66 -0.40 -1.26 16 24 C -0.15 -1.70 10.04 -39.61 -0.40 -2.10 16 25 C -0.07 -0.90 9.02 -39.53 -0.36 -1.26 16 26 C -0.15 -1.94 4.37 -104.44 -0.46 -2.39 16 27 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 28 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 29 H 0.06 0.52 6.66 -51.93 -0.35 0.18 16 30 H 0.41 7.08 6.78 -40.82 -0.28 6.80 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 34 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.09 1.01 7.53 -51.93 -0.39 0.62 16 36 H 0.09 0.80 8.10 -51.93 -0.42 0.37 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.58 7.36 -52.49 -0.39 1.19 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.82 348.15 -6.77 -39.60 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -5.33 Total: 16.41 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.35 Total: 1.73 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.40 Total: -49.41 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.02 Total: -27.84 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.82 -6.77 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935962674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.016 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds