Wall clock time and date at job start Tue Mar 31 2020 13:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.39740 * 2 1 4 4 O 1.21274 * 119.99894 * 354.89776 * 3 2 1 5 5 N 1.34772 * 120.00054 * 174.90242 * 3 2 1 6 6 C 1.46496 * 120.00421 * 185.01632 * 5 3 2 7 7 C 1.50701 * 109.47625 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99601 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00111 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00357 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99452 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00263 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99999 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00165 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.46884 * 90.00275 * 14 12 10 16 16 H 1.48493 * 109.47013 * 210.00283 * 14 12 10 17 17 H 1.48502 * 109.46999 * 330.00121 * 14 12 10 18 18 C 1.53062 * 109.43993 * 240.10823 * 2 1 3 19 19 C 1.53409 * 108.31580 * 288.09690 * 18 2 1 20 20 O 1.42831 * 108.37073 * 295.30691 * 19 18 2 21 21 C 1.35842 * 117.84360 * 49.26775 * 20 19 18 22 22 C 1.39147 * 118.49514 * 162.69712 * 21 20 19 23 23 C 1.37963 * 120.21086 * 179.76562 * 22 21 20 24 24 C 1.38296 * 119.95902 * 359.95696 * 23 22 21 25 25 C 1.38097 * 119.98617 * 0.09517 * 24 23 22 26 26 C 1.38370 * 121.80501 * 342.59762 * 21 20 19 27 27 H 1.08998 * 109.47503 * 300.11623 * 1 2 3 28 28 H 1.08997 * 109.46913 * 60.11702 * 1 2 3 29 29 H 1.08998 * 109.47131 * 180.11368 * 1 2 3 30 30 H 0.97005 * 120.00235 * 5.01760 * 5 3 2 31 31 H 1.08995 * 109.47420 * 300.00723 * 6 5 3 32 32 H 1.09007 * 109.46411 * 60.00030 * 6 5 3 33 33 H 0.96999 * 120.00090 * 359.97438 * 9 7 6 34 34 H 0.96994 * 120.00386 * 179.97438 * 13 12 10 35 35 H 1.08991 * 109.69181 * 168.39445 * 18 2 1 36 36 H 1.08995 * 109.72900 * 47.82171 * 18 2 1 37 37 H 1.08997 * 109.68559 * 175.58482 * 19 18 2 38 38 H 1.09001 * 109.68640 * 55.02149 * 19 18 2 39 39 H 1.07994 * 119.89730 * 359.76561 * 22 21 20 40 40 H 1.08003 * 120.02459 * 180.23476 * 23 22 21 41 41 H 1.07996 * 120.00315 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.84683 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4215 0.0000 4 8 1.2451 2.3409 -0.0934 5 7 3.3508 1.6710 0.1037 6 6 3.8290 3.0513 0.2144 7 6 5.3326 3.0555 0.3160 8 8 5.9445 2.0084 0.2982 9 7 5.9972 4.2226 0.4277 10 6 7.3651 4.2265 0.5196 11 1 7.9100 3.2942 0.5029 12 6 8.0503 5.4298 0.6342 13 7 9.3615 5.4336 0.7217 14 14 7.1078 7.0424 0.6623 15 1 6.7642 7.3904 2.0644 16 1 7.9487 8.1174 0.0774 17 1 5.8614 6.9011 -0.1324 18 6 2.0394 -0.7193 -1.2513 19 6 1.7732 -2.2211 -1.0861 20 8 2.5571 -2.6995 0.0078 21 6 2.5070 -2.0066 1.1752 22 6 2.9509 -2.6304 2.3371 23 6 2.9203 -1.9579 3.5413 24 6 2.4481 -0.6591 3.5951 25 6 2.0058 -0.0372 2.4442 26 6 2.0316 -0.7084 1.2328 27 1 -0.3634 0.5156 0.8889 28 1 -0.3633 0.5120 -0.8910 29 1 -0.3633 -1.0276 0.0020 30 1 3.9846 0.9366 0.1050 31 1 3.5233 3.6137 -0.6678 32 1 3.4030 3.5130 1.1053 33 1 5.5078 5.0600 0.4423 34 1 9.8399 6.2735 0.8014 35 1 3.1095 -0.5462 -1.3644 36 1 1.5122 -0.3473 -2.1298 37 1 2.0562 -2.7466 -1.9981 38 1 0.7157 -2.3861 -0.8797 39 1 3.3205 -3.6443 2.2961 40 1 3.2691 -2.4437 4.4406 41 1 2.4242 -0.1318 4.5373 42 1 1.6379 0.9772 2.4887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935962674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:22 Heat of formation + Delta-G solvation = -108.316961 kcal Electronic energy + Delta-G solvation = -26969.652355 eV Core-core repulsion = 23106.776653 eV Total energy + Delta-G solvation = -3862.875701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42925 -40.81079 -39.98323 -38.46447 -36.36314 -36.23818 -35.39195 -33.85775 -31.69956 -31.32679 -29.73688 -29.27469 -26.74760 -25.45554 -24.59549 -23.68430 -21.92589 -21.51422 -20.69018 -20.12317 -19.14560 -18.41115 -17.56059 -17.36158 -17.22685 -16.97977 -16.61706 -16.57872 -15.92669 -15.55700 -15.49895 -15.08933 -14.88394 -14.79695 -14.55957 -14.39731 -14.23269 -14.04033 -13.69869 -13.43997 -13.10436 -13.01406 -12.98164 -12.83574 -12.47004 -12.46041 -12.09779 -12.02206 -11.75167 -11.60751 -11.59374 -10.90179 -10.69414 -10.36342 -10.23497 -9.81814 -9.16639 -8.47390 -6.09756 0.27717 0.43693 1.29046 1.32037 1.42034 1.42793 1.76366 1.92465 2.18687 2.33996 2.72898 2.82528 3.08517 3.39990 3.44252 3.58045 3.71081 3.92162 4.00102 4.09166 4.18505 4.26887 4.32026 4.35277 4.44700 4.47346 4.51840 4.57250 4.78819 4.81333 4.86534 4.92526 5.02686 5.15226 5.23310 5.30648 5.44273 5.46254 5.56298 5.81331 5.85688 6.37147 6.44757 6.46457 6.75871 7.02157 7.26413 7.75436 8.69163 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.003450 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.268509 B = 8112.835100 C = 8579.936472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.028 4.028 3 C 0.531 3.469 4 O -0.566 6.566 5 N -0.706 5.706 6 C 0.116 3.884 7 C 0.444 3.556 8 O -0.614 6.614 9 N -0.576 5.576 10 C -0.332 4.332 11 H 0.062 0.938 12 C -0.006 4.006 13 N -0.925 5.925 14 Si 0.959 3.041 15 H -0.256 1.256 16 H -0.272 1.272 17 H -0.233 1.233 18 C -0.153 4.153 19 C 0.062 3.938 20 O -0.326 6.326 21 C 0.129 3.871 22 C -0.160 4.160 23 C -0.081 4.081 24 C -0.158 4.158 25 C -0.088 4.088 26 C -0.163 4.163 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.409 0.591 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.392 0.608 34 H 0.282 0.718 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.140 0.860 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 -12.488 0.226 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.031 4.031 3 C 0.318 3.682 4 O -0.445 6.445 5 N -0.359 5.359 6 C -0.011 4.011 7 C 0.231 3.769 8 O -0.500 6.500 9 N -0.216 5.216 10 C -0.461 4.461 11 H 0.080 0.920 12 C -0.206 4.206 13 N -0.565 5.565 14 Si 0.779 3.221 15 H -0.180 1.180 16 H -0.197 1.197 17 H -0.157 1.157 18 C -0.190 4.190 19 C -0.012 4.012 20 O -0.240 6.240 21 C 0.084 3.916 22 C -0.179 4.179 23 C -0.099 4.099 24 C -0.176 4.176 25 C -0.106 4.106 26 C -0.165 4.165 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.246 0.754 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.163 0.837 40 H 0.173 0.827 41 H 0.157 0.843 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.859 -12.565 0.127 24.352 hybrid contribution 0.635 1.141 0.063 1.308 sum -20.224 -11.424 0.190 23.228 Atomic orbital electron populations 1.21733 0.89482 1.03023 1.03364 1.19672 0.98867 0.90052 0.94516 1.20619 0.81224 0.91477 0.74879 1.90667 1.55731 1.47007 1.51069 1.45756 1.07901 1.08633 1.73615 1.20926 0.89896 0.85331 1.04972 1.20487 0.90040 0.83872 0.82476 1.90541 1.70277 1.32622 1.56566 1.41914 1.06445 1.07525 1.65747 1.19019 0.81284 0.95433 1.50387 0.92001 1.26060 0.96475 1.02506 0.95608 1.69778 1.08455 1.29479 1.48767 0.85445 0.79452 0.76984 0.80239 1.18019 1.19721 1.15659 1.22403 1.02601 0.96952 0.97082 1.23289 0.96213 0.92873 0.88850 1.85995 1.66184 1.52371 1.19430 1.18819 0.96534 0.89779 0.86514 1.20903 1.04929 1.01819 0.90228 1.21298 0.96495 0.94178 0.97926 1.21287 1.01471 0.96095 0.98738 1.20983 0.98197 0.99195 0.92261 1.19475 1.07606 0.94303 0.95070 0.92572 0.90844 0.89893 0.75377 0.87650 0.87731 0.77228 0.90868 0.91278 0.86950 0.84476 0.89506 0.83709 0.82689 0.84252 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 7.53 71.98 0.54 -1.71 16 2 C -0.03 -0.63 0.51 -53.63 -0.03 -0.66 16 3 C 0.53 15.42 5.21 87.66 0.46 15.87 16 4 O -0.57 -18.76 15.98 -3.01 -0.05 -18.81 16 5 N -0.71 -22.59 5.22 -466.80 -2.43 -25.02 16 6 C 0.12 3.87 6.16 85.63 0.53 4.40 16 7 C 0.44 19.67 7.85 87.66 0.69 20.36 16 8 O -0.61 -32.47 15.24 -3.05 -0.05 -32.52 16 9 N -0.58 -26.70 5.09 -307.00 -1.56 -28.26 16 10 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 11 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 12 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 13 N -0.93 -54.45 13.96 21.66 0.30 -54.14 16 14 Si 0.96 38.05 27.74 68.60 1.90 39.95 16 15 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 17 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 18 C -0.15 -2.85 4.91 30.75 0.15 -2.70 16 19 C 0.06 0.93 6.96 72.12 0.50 1.43 16 20 O -0.33 -7.15 10.27 -91.78 -0.94 -8.09 16 21 C 0.13 3.09 6.47 22.52 0.15 3.24 16 22 C -0.16 -3.50 9.94 22.42 0.22 -3.28 16 23 C -0.08 -1.62 10.04 22.22 0.22 -1.40 16 24 C -0.16 -3.49 10.04 22.25 0.22 -3.27 16 25 C -0.09 -2.21 9.02 22.30 0.20 -2.01 16 26 C -0.16 -4.00 4.37 -19.75 -0.09 -4.08 16 27 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 28 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 29 H 0.08 1.20 6.66 -2.39 -0.02 1.18 16 30 H 0.41 14.14 6.78 -92.70 -0.63 13.51 16 31 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 33 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 34 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.07 1.56 7.53 -2.39 -0.02 1.54 16 36 H 0.11 1.64 8.10 -2.39 -0.02 1.63 16 37 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.00 6.57 -2.39 -0.02 0.99 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.11 2.93 7.36 -2.91 -0.02 2.91 16 Total: -1.00 -74.77 348.15 2.11 -72.65 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.15 Total: 46.05 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.09 Total: 8.19 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.69 Total: -107.43 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -1.04 Total: -59.42 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -74.77 2.11 -72.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935962674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.662 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds