Wall clock time and date at job start Tue Mar 31 2020 13:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.43449 * 2 1 4 4 O 1.21283 * 119.99488 * 120.00257 * 3 2 1 5 5 N 1.34777 * 120.00290 * 300.00697 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27728 * 5 3 2 7 7 C 1.50700 * 109.46769 * 179.72341 * 6 5 3 8 8 O 1.21284 * 120.00579 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99600 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99831 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99608 * 0.02562 * 10 9 7 12 12 C 1.38942 * 119.99955 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00352 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.46626 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46894 * 119.99796 * 14 12 10 17 17 H 1.48494 * 109.47261 * 240.00388 * 14 12 10 18 18 C 1.53069 * 109.43969 * 119.91929 * 2 1 3 19 19 C 1.53413 * 108.28997 * 168.21192 * 18 2 1 20 20 O 1.42832 * 108.36899 * 295.25290 * 19 18 2 21 21 C 1.35837 * 117.86265 * 49.14900 * 20 19 18 22 22 C 1.39149 * 118.49801 * 162.97721 * 21 20 19 23 23 C 1.37970 * 120.21497 * 179.82118 * 22 21 20 24 24 C 1.38291 * 119.96032 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.98155 * 0.08207 * 24 23 22 26 26 C 1.38284 * 121.78697 * 342.94070 * 21 20 19 27 27 H 1.08997 * 109.47443 * 59.99188 * 1 2 3 28 28 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46992 * 299.99211 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 31 31 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 32 32 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 33 33 H 0.96995 * 120.00445 * 0.02562 * 9 7 6 34 34 H 0.97000 * 120.00497 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.70056 * 287.90855 * 18 2 1 36 36 H 1.08997 * 109.70062 * 48.47394 * 18 2 1 37 37 H 1.08996 * 109.68688 * 54.97068 * 19 18 2 38 38 H 1.08998 * 109.68035 * 175.49684 * 19 18 2 39 39 H 1.07991 * 119.89364 * 359.84242 * 22 21 20 40 40 H 1.07997 * 120.02082 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.00659 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.84072 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0314 1.4212 0.0000 4 8 2.7285 1.8182 0.9096 5 7 1.7052 2.2509 -1.0107 6 6 2.1977 3.6306 -1.0137 7 6 1.6993 4.3392 -2.2468 8 8 1.0018 3.7496 -3.0449 9 7 2.0287 5.6282 -2.4628 10 6 1.5757 6.2727 -3.5849 11 1 0.9546 5.7476 -4.2955 12 6 1.9149 7.6016 -3.8074 13 7 2.6702 8.2406 -2.9425 14 14 1.2971 8.4800 -5.3359 15 1 0.4710 7.5466 -6.1432 16 1 0.4740 9.6496 -4.9360 17 1 2.4547 8.9420 -6.1431 18 6 2.0394 -0.7200 1.2511 19 6 3.5443 -0.9676 1.0848 20 8 3.7344 -1.8664 -0.0088 21 6 3.0948 -1.5914 -1.1752 22 6 3.5309 -2.2222 -2.3363 23 6 2.9045 -1.9716 -3.5398 24 6 1.8393 -1.0913 -3.5938 25 6 1.4045 -0.4626 -2.4436 26 6 2.0317 -0.7089 -1.2324 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.1480 1.9332 -1.7384 31 1 1.8346 4.1479 -0.1256 32 1 3.2877 3.6274 -1.0121 33 1 2.5868 6.0996 -1.8248 34 1 2.9066 9.1685 -3.0975 35 1 1.8642 -0.0988 2.1294 36 1 1.5202 -1.6716 1.3644 37 1 4.0509 -0.0250 0.8776 38 1 3.9468 -1.4080 1.9970 39 1 4.3621 -2.9103 -2.2953 40 1 3.2453 -2.4632 -4.4390 41 1 1.3481 -0.8949 -4.5354 42 1 0.5727 0.2247 -2.4885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935962676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:27 Heat of formation + Delta-G solvation = -91.456146 kcal Electronic energy + Delta-G solvation = -26958.440081 eV Core-core repulsion = 23096.295519 eV Total energy + Delta-G solvation = -3862.144562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46461 -39.30603 -38.17691 -37.58457 -35.28670 -34.54443 -33.74029 -31.41637 -30.77891 -30.34389 -28.91907 -27.70024 -24.90307 -24.38513 -23.66065 -22.26406 -21.32862 -19.79569 -19.25330 -18.11378 -17.93188 -17.38678 -16.55236 -15.95948 -15.75927 -15.34846 -15.24984 -15.01908 -14.56035 -14.33139 -14.24466 -14.04453 -13.81277 -13.45707 -13.39542 -13.10317 -12.70419 -12.42786 -12.24034 -12.14639 -12.03305 -11.81796 -11.72494 -11.66034 -11.16858 -11.12360 -10.75328 -10.47998 -10.43236 -10.35274 -9.85226 -9.67707 -8.91908 -8.79446 -8.66820 -8.23179 -8.13243 -6.54336 -3.96452 1.16934 1.37160 2.70230 3.08117 3.19305 3.21159 3.23536 3.29703 3.70140 3.74561 4.08880 4.26384 4.41476 4.56609 4.69656 4.83367 4.83815 5.02685 5.13161 5.14549 5.19920 5.31769 5.32955 5.35732 5.44714 5.55683 5.60876 5.80056 5.82791 5.85545 5.90085 5.91649 5.94703 6.03213 6.22112 6.35575 6.47747 6.60566 6.69961 7.36050 7.43486 7.71466 7.88905 8.33044 8.42154 9.01621 9.35884 9.83405 10.62571 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003276 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.440685 B = 8543.808288 C = 9276.321114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C 0.524 3.476 4 O -0.546 6.546 5 N -0.700 5.700 6 C 0.107 3.893 7 C 0.428 3.572 8 O -0.597 6.597 9 N -0.548 5.548 10 C -0.305 4.305 11 H 0.106 0.894 12 C 0.026 3.974 13 N -0.894 5.894 14 Si 0.932 3.068 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.134 4.134 19 C 0.058 3.942 20 O -0.318 6.318 21 C 0.142 3.858 22 C -0.153 4.153 23 C -0.083 4.083 24 C -0.147 4.147 25 C -0.075 4.075 26 C -0.157 4.157 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.410 0.590 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -18.635 5.577 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.037 4.037 3 C 0.309 3.691 4 O -0.424 6.424 5 N -0.354 5.354 6 C -0.021 4.021 7 C 0.213 3.787 8 O -0.483 6.483 9 N -0.183 5.183 10 C -0.434 4.434 11 H 0.124 0.876 12 C -0.177 4.177 13 N -0.534 5.534 14 Si 0.759 3.241 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.171 4.171 19 C -0.017 4.017 20 O -0.232 6.232 21 C 0.097 3.903 22 C -0.172 4.172 23 C -0.101 4.101 24 C -0.166 4.166 25 C -0.093 4.093 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.633 -18.638 5.722 19.507 hybrid contribution -0.260 1.031 -0.643 1.243 sum -0.893 -17.607 5.080 18.347 Atomic orbital electron populations 1.21921 0.91093 1.03333 1.03290 1.19624 0.97858 0.91904 0.94285 1.20243 0.80285 0.86753 0.81851 1.90656 1.38420 1.77113 1.36219 1.45741 1.52819 1.11563 1.25285 1.20993 0.99935 0.82454 0.98694 1.19709 0.86713 0.83729 0.88504 1.90486 1.43072 1.66315 1.48459 1.41801 1.44944 1.09072 1.22470 1.19781 1.29681 0.94036 0.99909 0.87593 1.25327 0.96539 0.96688 0.99131 1.69621 1.35895 1.12034 1.35886 0.85762 0.78557 0.79110 0.80689 1.19107 1.20593 1.20581 1.22128 0.96435 1.01174 0.97410 1.23110 0.96275 0.94245 0.88066 1.85957 1.67443 1.50488 1.19360 1.18638 0.90819 0.94848 0.86019 1.20575 1.02533 1.03879 0.90199 1.20969 0.95123 0.97098 0.96894 1.21054 0.98453 0.98573 0.98475 1.21037 0.98880 0.98042 0.91358 1.19456 0.98843 1.02480 0.95012 0.91251 0.90961 0.91319 0.75091 0.89722 0.89871 0.77053 0.91614 0.88598 0.89860 0.90331 0.87372 0.85259 0.85367 0.85460 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.89 37.16 0.29 -1.15 16 2 C -0.03 -0.42 0.55 -156.74 -0.09 -0.51 16 3 C 0.52 8.27 6.12 -10.98 -0.07 8.20 16 4 O -0.55 -9.74 14.37 5.55 0.08 -9.66 16 5 N -0.70 -11.83 5.26 -61.47 -0.32 -12.15 16 6 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 7 C 0.43 9.75 7.85 -10.98 -0.09 9.66 16 8 O -0.60 -15.03 15.24 5.55 0.08 -14.95 16 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 10 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 11 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 12 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 13 N -0.89 -23.73 13.05 55.50 0.72 -23.01 16 14 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 C -0.13 -1.47 4.61 -26.48 -0.12 -1.59 16 19 C 0.06 0.67 6.87 37.37 0.26 0.93 16 20 O -0.32 -4.17 10.27 -19.23 -0.20 -4.37 16 21 C 0.14 1.90 6.47 -39.23 -0.25 1.65 16 22 C -0.15 -1.82 9.94 -39.34 -0.39 -2.21 16 23 C -0.08 -0.90 10.04 -39.66 -0.40 -1.30 16 24 C -0.15 -1.73 10.04 -39.61 -0.40 -2.13 16 25 C -0.08 -0.95 8.09 -39.50 -0.32 -1.27 16 26 C -0.16 -2.06 4.68 -104.44 -0.49 -2.55 16 27 H 0.07 0.73 5.96 -51.93 -0.31 0.42 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.41 6.87 4.64 -40.82 -0.19 6.68 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.10 1.03 7.69 -51.93 -0.40 0.63 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 1.09 6.45 -51.93 -0.34 0.76 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.13 1.56 5.30 -52.49 -0.28 1.28 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -31.10 345.23 -6.99 -38.09 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -5.15 Total: 17.16 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.33 Total: 1.91 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.34 Total: -48.72 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.03 Total: -28.98 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.10 -6.99 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935962676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.367 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds