Wall clock time and date at job start Tue Mar 31 2020 13:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.43449 * 2 1 4 4 O 1.21283 * 119.99488 * 120.00257 * 3 2 1 5 5 N 1.34777 * 120.00290 * 300.00697 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27728 * 5 3 2 7 7 C 1.50700 * 109.46769 * 179.72341 * 6 5 3 8 8 O 1.21284 * 120.00579 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99600 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99831 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99608 * 0.02562 * 10 9 7 12 12 C 1.38942 * 119.99955 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00352 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.46626 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46894 * 119.99796 * 14 12 10 17 17 H 1.48494 * 109.47261 * 240.00388 * 14 12 10 18 18 C 1.53069 * 109.43969 * 119.91929 * 2 1 3 19 19 C 1.53413 * 108.28997 * 168.21192 * 18 2 1 20 20 O 1.42832 * 108.36899 * 295.25290 * 19 18 2 21 21 C 1.35837 * 117.86265 * 49.14900 * 20 19 18 22 22 C 1.39149 * 118.49801 * 162.97721 * 21 20 19 23 23 C 1.37970 * 120.21497 * 179.82118 * 22 21 20 24 24 C 1.38291 * 119.96032 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.98155 * 0.08207 * 24 23 22 26 26 C 1.38284 * 121.78697 * 342.94070 * 21 20 19 27 27 H 1.08997 * 109.47443 * 59.99188 * 1 2 3 28 28 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46992 * 299.99211 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 31 31 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 32 32 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 33 33 H 0.96995 * 120.00445 * 0.02562 * 9 7 6 34 34 H 0.97000 * 120.00497 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.70056 * 287.90855 * 18 2 1 36 36 H 1.08997 * 109.70062 * 48.47394 * 18 2 1 37 37 H 1.08996 * 109.68688 * 54.97068 * 19 18 2 38 38 H 1.08998 * 109.68035 * 175.49684 * 19 18 2 39 39 H 1.07991 * 119.89364 * 359.84242 * 22 21 20 40 40 H 1.07997 * 120.02082 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.00659 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.84072 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0314 1.4212 0.0000 4 8 2.7285 1.8182 0.9096 5 7 1.7052 2.2509 -1.0107 6 6 2.1977 3.6306 -1.0137 7 6 1.6993 4.3392 -2.2468 8 8 1.0018 3.7496 -3.0449 9 7 2.0287 5.6282 -2.4628 10 6 1.5757 6.2727 -3.5849 11 1 0.9546 5.7476 -4.2955 12 6 1.9149 7.6016 -3.8074 13 7 2.6702 8.2406 -2.9425 14 14 1.2971 8.4800 -5.3359 15 1 0.4710 7.5466 -6.1432 16 1 0.4740 9.6496 -4.9360 17 1 2.4547 8.9420 -6.1431 18 6 2.0394 -0.7200 1.2511 19 6 3.5443 -0.9676 1.0848 20 8 3.7344 -1.8664 -0.0088 21 6 3.0948 -1.5914 -1.1752 22 6 3.5309 -2.2222 -2.3363 23 6 2.9045 -1.9716 -3.5398 24 6 1.8393 -1.0913 -3.5938 25 6 1.4045 -0.4626 -2.4436 26 6 2.0317 -0.7089 -1.2324 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.1480 1.9332 -1.7384 31 1 1.8346 4.1479 -0.1256 32 1 3.2877 3.6274 -1.0121 33 1 2.5868 6.0996 -1.8248 34 1 2.9066 9.1685 -3.0975 35 1 1.8642 -0.0988 2.1294 36 1 1.5202 -1.6716 1.3644 37 1 4.0509 -0.0250 0.8776 38 1 3.9468 -1.4080 1.9970 39 1 4.3621 -2.9103 -2.2953 40 1 3.2453 -2.4632 -4.4390 41 1 1.3481 -0.8949 -4.5354 42 1 0.5727 0.2247 -2.4885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935962676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:26 Heat of formation + Delta-G solvation = -112.244117 kcal Electronic energy + Delta-G solvation = -26959.341515 eV Core-core repulsion = 23096.295519 eV Total energy + Delta-G solvation = -3863.045996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.48952 -40.67959 -39.83546 -38.51021 -36.31806 -36.28206 -35.37442 -33.39249 -31.70097 -31.25643 -29.95502 -29.14058 -26.62735 -25.42706 -24.67878 -23.28471 -22.39143 -21.43375 -20.62776 -20.01862 -18.89778 -18.53201 -17.61579 -17.36073 -17.16406 -16.78767 -16.61450 -16.30790 -15.96363 -15.72532 -15.62884 -15.20869 -14.90928 -14.82335 -14.38653 -14.14308 -13.97691 -13.69806 -13.56480 -13.48608 -13.30182 -12.98800 -12.92871 -12.79205 -12.59518 -12.46001 -12.11923 -12.05423 -11.66175 -11.59476 -11.39667 -11.04339 -10.58872 -10.27101 -10.10586 -9.79589 -9.18214 -8.52637 -6.02910 0.24258 0.43101 1.33760 1.42326 1.46601 1.56215 1.87925 1.95097 2.29538 2.31276 2.78923 3.08034 3.14485 3.35004 3.46053 3.61455 3.77511 3.79580 4.17823 4.20858 4.25602 4.30507 4.35620 4.36561 4.44951 4.46373 4.51400 4.58099 4.72894 4.77022 4.93980 4.97592 5.01749 5.10914 5.20979 5.31774 5.37273 5.44513 5.57290 5.81801 5.89783 6.38144 6.42252 6.46905 7.01233 7.03762 7.41554 7.91400 8.64492 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003276 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.440685 B = 8543.808288 C = 9276.321114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C 0.522 3.478 4 O -0.568 6.568 5 N -0.704 5.704 6 C 0.118 3.882 7 C 0.432 3.568 8 O -0.621 6.621 9 N -0.558 5.558 10 C -0.336 4.336 11 H 0.087 0.913 12 C -0.010 4.010 13 N -0.916 5.916 14 Si 0.997 3.003 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.272 1.272 18 C -0.130 4.130 19 C 0.055 3.945 20 O -0.325 6.325 21 C 0.122 3.878 22 C -0.161 4.161 23 C -0.079 4.079 24 C -0.157 4.157 25 C -0.088 4.088 26 C -0.168 4.168 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.411 0.589 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.398 0.602 34 H 0.280 0.720 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.141 0.859 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 -19.611 5.372 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 C 0.309 3.691 4 O -0.447 6.447 5 N -0.358 5.358 6 C -0.009 4.009 7 C 0.219 3.781 8 O -0.509 6.509 9 N -0.194 5.194 10 C -0.465 4.465 11 H 0.105 0.895 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.168 4.168 19 C -0.020 4.020 20 O -0.239 6.239 21 C 0.076 3.924 22 C -0.179 4.179 23 C -0.097 4.097 24 C -0.175 4.175 25 C -0.106 4.106 26 C -0.169 4.169 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.250 0.750 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.860 -19.628 5.537 20.412 hybrid contribution -0.154 1.276 -0.576 1.409 sum -1.014 -18.352 4.961 19.037 Atomic orbital electron populations 1.21945 0.89461 1.04657 1.03352 1.19673 0.99129 0.89421 0.95062 1.20881 0.79508 0.87815 0.80855 1.90641 1.39312 1.77846 1.36929 1.45794 1.53123 1.10968 1.25887 1.20818 1.00141 0.83267 0.96722 1.20352 0.85427 0.83159 0.89131 1.90463 1.43917 1.66777 1.49718 1.41846 1.45479 1.09751 1.22287 1.19781 1.30944 0.94957 1.00847 0.89481 1.26124 0.96283 0.96795 1.01842 1.69685 1.36270 1.12527 1.37167 0.84818 0.78210 0.77866 0.77135 1.19333 1.19611 1.19681 1.22166 0.96045 1.01965 0.96595 1.23203 0.96753 0.93309 0.88690 1.85954 1.67633 1.50719 1.19598 1.18941 0.91217 0.95566 0.86634 1.20890 1.02990 1.03926 0.90116 1.21318 0.94290 0.96401 0.97664 1.21348 0.98822 0.98549 0.98762 1.21164 0.99198 0.98454 0.91785 1.19529 0.99209 1.02880 0.95273 0.91752 0.89009 0.90712 0.74982 0.88443 0.89270 0.76772 0.91065 0.88333 0.87766 0.93040 0.84614 0.83740 0.82478 0.84108 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 7.89 71.98 0.57 -2.09 16 2 C -0.03 -0.72 0.55 -53.63 -0.03 -0.75 16 3 C 0.52 16.32 6.12 87.66 0.54 16.85 16 4 O -0.57 -20.14 14.37 -3.04 -0.04 -20.18 16 5 N -0.70 -23.71 5.26 -466.79 -2.46 -26.17 16 6 C 0.12 4.38 6.15 85.63 0.53 4.91 16 7 C 0.43 19.94 7.85 87.66 0.69 20.63 16 8 O -0.62 -31.74 15.24 -3.04 -0.05 -31.79 16 9 N -0.56 -27.95 5.29 -306.99 -1.62 -29.57 16 10 C -0.34 -18.39 9.68 84.04 0.81 -17.58 16 11 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 12 C -0.01 -0.51 5.50 84.92 0.47 -0.04 16 13 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 14 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 C -0.13 -2.67 4.61 30.76 0.14 -2.52 16 19 C 0.05 1.23 6.87 72.12 0.50 1.72 16 20 O -0.32 -8.17 10.27 -91.72 -0.94 -9.11 16 21 C 0.12 3.14 6.47 22.50 0.15 3.28 16 22 C -0.16 -3.58 9.94 22.43 0.22 -3.36 16 23 C -0.08 -1.57 10.04 22.22 0.22 -1.34 16 24 C -0.16 -3.48 10.04 22.25 0.22 -3.26 16 25 C -0.09 -2.18 8.09 22.32 0.18 -2.00 16 26 C -0.17 -4.28 4.68 -19.74 -0.09 -4.37 16 27 H 0.06 1.31 5.96 -2.39 -0.01 1.30 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.41 13.83 4.64 -92.71 -0.43 13.40 16 31 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 32 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 34 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.10 1.97 7.69 -2.39 -0.02 1.95 16 36 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.05 1.43 6.45 -2.39 -0.02 1.42 16 38 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.14 2.67 8.06 -2.92 -0.02 2.64 16 40 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.13 3.08 5.30 -2.91 -0.02 3.06 16 Total: -1.00 -66.28 345.23 2.23 -64.06 By element: Atomic # 1 Polarization: 47.49 SS G_CDS: -0.08 Total: 47.41 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.11 Total: 10.09 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -3.80 Total: -103.93 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.03 Total: -61.08 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -66.28 2.23 -64.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935962676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.188 kcal (2) G-P(sol) polarization free energy of solvation -66.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds