Wall clock time and date at job start Tue Mar 31 2020 13:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35951 * 120.56695 * 2 1 4 4 C 1.40850 * 119.33789 * 179.97438 * 3 2 1 5 5 O 1.21859 * 119.75549 * 179.97438 * 4 3 2 6 6 O 1.34376 * 120.48744 * 0.02562 * 4 3 2 7 7 C 1.33728 * 121.20352 * 359.70473 * 6 4 3 8 8 C 1.50704 * 119.68695 * 180.28560 * 7 6 4 9 9 C 1.37581 * 120.62048 * 0.58232 * 7 6 4 10 10 C 1.47518 * 120.25888 * 179.70823 * 9 7 6 11 11 O 1.21603 * 119.99883 * 269.72109 * 10 9 7 12 12 N 1.34777 * 120.00143 * 89.99826 * 10 9 7 13 13 C 1.46505 * 119.99951 * 179.72885 * 12 10 9 14 14 H 1.08994 * 115.51647 * 9.41167 * 13 12 10 15 15 C 1.53003 * 117.43944 * 223.99974 * 13 12 10 16 16 H 1.09007 * 119.53884 * 4.11405 * 15 13 12 17 17 C 1.57738 * 116.08264 * 161.57768 * 15 13 12 18 18 N 1.48144 * 104.61938 * 87.40277 * 17 15 13 19 19 C 1.36934 * 127.83752 * 139.76033 * 18 17 15 20 20 H 1.07998 * 120.00176 * 195.55529 * 19 18 17 21 21 C 1.38816 * 120.00210 * 15.55600 * 19 18 17 22 22 N 1.31626 * 119.99839 * 9.00561 * 21 19 18 23 23 Si 1.86793 * 120.00325 * 189.00974 * 21 19 18 24 24 H 1.48498 * 109.47564 * 94.44091 * 23 21 19 25 25 H 1.48500 * 109.47230 * 214.44456 * 23 21 19 26 26 H 1.48503 * 109.46993 * 334.43873 * 23 21 19 27 27 C 1.48147 * 104.32270 * 319.76523 * 18 17 15 28 28 C 1.53001 * 117.44399 * 154.83408 * 13 12 10 29 29 H 1.09003 * 119.53568 * 355.87115 * 28 13 12 30 30 H 1.09001 * 109.46818 * 270.02214 * 1 2 3 31 31 H 1.08991 * 109.47102 * 30.02291 * 1 2 3 32 32 H 1.08999 * 109.46984 * 150.02755 * 1 2 3 33 33 H 1.08001 * 120.33498 * 0.02562 * 3 2 1 34 34 H 1.08994 * 109.47350 * 270.28938 * 8 7 6 35 35 H 1.09002 * 109.47007 * 30.29566 * 8 7 6 36 36 H 1.09006 * 109.46879 * 150.28829 * 8 7 6 37 37 H 0.96996 * 119.99880 * 359.71844 * 12 10 9 38 38 H 1.09005 * 110.96042 * 328.33801 * 17 15 13 39 39 H 1.09001 * 109.85456 * 205.91461 * 17 15 13 40 40 H 0.96997 * 120.00133 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.40580 * 280.79479 * 27 18 17 42 42 H 1.08996 * 110.50522 * 158.41669 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1706 0.0000 4 6 3.6066 1.1404 0.0005 5 8 4.2339 2.1851 0.0001 6 8 4.2634 -0.0320 0.0006 7 6 3.6041 -1.1954 0.0059 8 6 4.3752 -2.4902 0.0123 9 6 2.2285 -1.2215 -0.0004 10 6 1.5094 -2.5095 -0.0009 11 8 1.2135 -3.0402 -1.0542 12 7 1.1755 -3.0954 1.1661 13 6 0.4561 -4.3716 1.1655 14 1 0.3682 -4.8606 0.1954 15 6 -0.7143 -4.5216 2.1395 16 1 -1.0203 -3.6700 2.7472 17 6 -1.7344 -5.6827 1.8242 18 7 -1.1632 -6.8744 2.4938 19 6 -1.8303 -7.8494 3.1861 20 1 -1.2856 -8.5215 3.8326 21 6 -3.2068 -7.9741 3.0570 22 7 -3.8476 -7.2785 2.1415 23 14 -4.1497 -9.1289 4.1824 24 1 -4.6721 -8.3690 5.3463 25 1 -5.2831 -9.7318 3.4358 26 1 -3.2436 -10.2043 4.6596 27 6 0.2936 -6.7717 2.2445 28 6 0.6097 -5.2682 2.3958 29 1 1.2902 -4.9728 3.1944 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6732 2.1143 0.0004 34 1 4.5658 -2.8046 -1.0138 35 1 5.3234 -2.3459 0.5302 36 1 3.7941 -3.2567 0.5252 37 1 1.4116 -2.6721 2.0062 38 1 -1.8134 -5.8515 0.7502 39 1 -2.7108 -5.4420 2.2447 40 1 -4.8095 -7.3653 2.0515 41 1 0.5314 -7.1106 1.2362 42 1 0.8488 -7.3528 2.9808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960946707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:20 Heat of formation + Delta-G solvation = -16.412612 kcal Electronic energy + Delta-G solvation = -26165.258423 eV Core-core repulsion = 22306.367993 eV Total energy + Delta-G solvation = -3858.890430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46614 -40.09010 -38.54447 -38.07303 -36.24708 -34.62172 -33.31467 -32.57821 -30.38669 -29.20747 -28.38035 -27.10052 -25.79682 -24.73239 -22.44343 -22.38799 -21.02811 -20.52963 -19.42152 -18.73162 -18.41328 -17.35123 -16.98484 -16.90713 -16.45795 -15.69519 -14.89747 -14.77179 -14.45658 -14.36964 -14.12160 -13.89865 -13.81767 -13.63180 -13.35799 -13.22202 -12.83410 -12.80156 -12.72751 -12.37068 -12.17135 -11.67221 -11.57794 -11.09014 -10.90284 -10.87755 -10.67289 -10.47762 -10.34005 -10.25287 -10.12523 -9.82813 -9.32869 -8.83456 -8.77939 -8.50597 -6.95652 -5.87088 -3.22061 -0.00034 0.95488 1.80933 2.24808 2.72870 2.92256 3.33596 3.39195 3.41345 3.68006 3.88373 4.13875 4.24406 4.38336 4.44150 4.62345 4.75209 4.88862 5.01098 5.04329 5.16294 5.20723 5.26377 5.27838 5.31465 5.42703 5.47515 5.69738 5.71644 5.74403 5.77309 5.91849 6.04286 6.39235 6.58395 6.62510 6.68292 6.76327 7.10475 7.24772 7.30826 7.45252 7.64266 7.96095 8.12584 9.03328 9.65881 10.41844 11.27044 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030401 B = 0.002556 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.806884 B =10951.082427 C =11401.121146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 C -0.279 4.279 4 C 0.499 3.501 5 O -0.474 6.474 6 O -0.256 6.256 7 C 0.190 3.810 8 C -0.121 4.121 9 C -0.259 4.259 10 C 0.581 3.419 11 O -0.519 6.519 12 N -0.688 5.688 13 C 0.089 3.911 14 H 0.135 0.865 15 C -0.180 4.180 16 H 0.106 0.894 17 C 0.188 3.812 18 N -0.592 5.592 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.914 5.914 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.155 3.845 28 C -0.181 4.181 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.030 0.970 39 H 0.090 0.910 40 H 0.255 0.745 41 H 0.028 0.972 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 13.360 -2.385 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 C -0.299 4.299 4 C 0.352 3.648 5 O -0.364 6.364 6 O -0.165 6.165 7 C 0.140 3.860 8 C -0.177 4.177 9 C -0.264 4.264 10 C 0.365 3.635 11 O -0.394 6.394 12 N -0.336 5.336 13 C -0.016 4.016 14 H 0.152 0.848 15 C -0.202 4.202 16 H 0.124 0.876 17 C 0.061 3.939 18 N -0.315 5.315 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.029 3.971 28 C -0.202 4.202 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.182 0.818 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.904 13.343 -3.111 18.821 hybrid contribution -0.553 -0.064 1.071 1.207 sum 12.351 13.279 -2.040 18.249 Atomic orbital electron populations 1.21107 0.88774 1.04969 1.04243 1.20308 0.97662 0.90483 0.85574 1.22240 0.92529 1.00331 1.14774 1.19296 0.88442 0.80700 0.76399 1.91016 1.70881 1.25725 1.48787 1.83409 1.44642 1.14615 1.73812 1.22819 0.90333 0.85606 0.87206 1.21183 1.01445 0.89154 1.05928 1.19869 0.92683 0.95560 1.18296 1.17431 0.78777 0.82986 0.84285 1.90867 1.53642 1.63904 1.31012 1.45474 1.57302 1.22878 1.07960 1.21996 0.97778 0.84635 0.97201 0.84782 1.25471 0.92136 1.00865 1.01734 0.87586 1.21679 0.94897 0.81845 0.95476 1.45120 1.00215 1.24031 1.62150 1.19001 0.89957 1.08342 1.18415 0.90452 1.24915 0.97052 0.99784 0.98430 1.69888 1.08146 1.44273 1.33701 0.86078 0.79603 0.80095 0.79827 1.21509 1.21614 1.20459 1.21134 0.87630 0.90212 0.98170 1.24268 1.01379 0.96144 0.98456 0.87936 0.88846 0.89608 0.89676 0.81828 0.87393 0.88370 0.87846 0.76532 0.95160 0.89162 0.93448 0.95436 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.67 36.01 0.35 -0.71 16 2 C 0.06 0.56 5.93 -104.06 -0.62 -0.06 16 3 C -0.28 -2.63 9.64 -39.41 -0.38 -3.01 16 4 C 0.50 5.88 7.93 31.72 0.25 6.13 16 5 O -0.47 -7.05 17.93 -19.60 -0.35 -7.40 16 6 O -0.26 -2.70 9.81 -17.63 -0.17 -2.87 16 7 C 0.19 1.70 7.03 -34.55 -0.24 1.45 16 8 C -0.12 -0.76 9.80 36.01 0.35 -0.41 16 9 C -0.26 -2.57 5.63 -104.97 -0.59 -3.16 16 10 C 0.58 6.90 4.23 -12.48 -0.05 6.85 16 11 O -0.52 -8.25 16.67 5.27 0.09 -8.16 16 12 N -0.69 -7.55 5.54 -54.85 -0.30 -7.85 16 13 C 0.09 1.29 5.93 -67.93 -0.40 0.89 16 14 H 0.13 2.25 7.40 -51.93 -0.38 1.86 16 15 C -0.18 -3.06 7.34 -87.43 -0.64 -3.70 16 16 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 17 C 0.19 4.25 5.76 -0.55 0.00 4.25 16 18 N -0.59 -14.36 3.38 -166.70 -0.56 -14.93 16 19 C -0.23 -6.12 10.35 -15.06 -0.16 -6.28 16 20 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 22 N -0.91 -25.92 10.86 55.49 0.60 -25.32 16 23 Si 0.91 21.25 29.56 -169.99 -5.03 16.23 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 C 0.16 3.01 7.04 -2.41 -0.02 2.99 16 28 C -0.18 -2.82 6.97 -89.30 -0.62 -3.44 16 29 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.08 0.83 7.18 -51.93 -0.37 0.46 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.67 6.99 -51.93 -0.36 0.31 16 37 H 0.40 3.39 8.81 -40.82 -0.36 3.03 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 2.30 6.51 -51.93 -0.34 1.97 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -32.79 358.04 -8.79 -41.58 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.59 Total: 1.76 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.87 Total: 1.57 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.26 Total: -48.10 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.44 Total: -18.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.79 -8.79 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960946707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.170 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds