Wall clock time and date at job start Tue Mar 31 2020 13:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35951 * 120.56695 * 2 1 4 4 C 1.40850 * 119.33789 * 179.97438 * 3 2 1 5 5 O 1.21859 * 119.75549 * 179.97438 * 4 3 2 6 6 O 1.34376 * 120.48744 * 0.02562 * 4 3 2 7 7 C 1.33728 * 121.20352 * 359.70473 * 6 4 3 8 8 C 1.50704 * 119.68695 * 180.28560 * 7 6 4 9 9 C 1.37581 * 120.62048 * 0.58232 * 7 6 4 10 10 C 1.47518 * 120.25888 * 179.70823 * 9 7 6 11 11 O 1.21603 * 119.99883 * 269.72109 * 10 9 7 12 12 N 1.34777 * 120.00143 * 89.99826 * 10 9 7 13 13 C 1.46505 * 119.99951 * 179.72885 * 12 10 9 14 14 H 1.08994 * 115.51647 * 9.41167 * 13 12 10 15 15 C 1.53003 * 117.43944 * 223.99974 * 13 12 10 16 16 H 1.09007 * 119.53884 * 4.11405 * 15 13 12 17 17 C 1.57738 * 116.08264 * 161.57768 * 15 13 12 18 18 N 1.48144 * 104.61938 * 87.40277 * 17 15 13 19 19 C 1.36934 * 127.83752 * 139.76033 * 18 17 15 20 20 H 1.07998 * 120.00176 * 195.55529 * 19 18 17 21 21 C 1.38816 * 120.00210 * 15.55600 * 19 18 17 22 22 N 1.31626 * 119.99839 * 9.00561 * 21 19 18 23 23 Si 1.86793 * 120.00325 * 189.00974 * 21 19 18 24 24 H 1.48498 * 109.47564 * 94.44091 * 23 21 19 25 25 H 1.48500 * 109.47230 * 214.44456 * 23 21 19 26 26 H 1.48503 * 109.46993 * 334.43873 * 23 21 19 27 27 C 1.48147 * 104.32270 * 319.76523 * 18 17 15 28 28 C 1.53001 * 117.44399 * 154.83408 * 13 12 10 29 29 H 1.09003 * 119.53568 * 355.87115 * 28 13 12 30 30 H 1.09001 * 109.46818 * 270.02214 * 1 2 3 31 31 H 1.08991 * 109.47102 * 30.02291 * 1 2 3 32 32 H 1.08999 * 109.46984 * 150.02755 * 1 2 3 33 33 H 1.08001 * 120.33498 * 0.02562 * 3 2 1 34 34 H 1.08994 * 109.47350 * 270.28938 * 8 7 6 35 35 H 1.09002 * 109.47007 * 30.29566 * 8 7 6 36 36 H 1.09006 * 109.46879 * 150.28829 * 8 7 6 37 37 H 0.96996 * 119.99880 * 359.71844 * 12 10 9 38 38 H 1.09005 * 110.96042 * 328.33801 * 17 15 13 39 39 H 1.09001 * 109.85456 * 205.91461 * 17 15 13 40 40 H 0.96997 * 120.00133 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.40580 * 280.79479 * 27 18 17 42 42 H 1.08996 * 110.50522 * 158.41669 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1706 0.0000 4 6 3.6066 1.1404 0.0005 5 8 4.2339 2.1851 0.0001 6 8 4.2634 -0.0320 0.0006 7 6 3.6041 -1.1954 0.0059 8 6 4.3752 -2.4902 0.0123 9 6 2.2285 -1.2215 -0.0004 10 6 1.5094 -2.5095 -0.0009 11 8 1.2135 -3.0402 -1.0542 12 7 1.1755 -3.0954 1.1661 13 6 0.4561 -4.3716 1.1655 14 1 0.3682 -4.8606 0.1954 15 6 -0.7143 -4.5216 2.1395 16 1 -1.0203 -3.6700 2.7472 17 6 -1.7344 -5.6827 1.8242 18 7 -1.1632 -6.8744 2.4938 19 6 -1.8303 -7.8494 3.1861 20 1 -1.2856 -8.5215 3.8326 21 6 -3.2068 -7.9741 3.0570 22 7 -3.8476 -7.2785 2.1415 23 14 -4.1497 -9.1289 4.1824 24 1 -4.6721 -8.3690 5.3463 25 1 -5.2831 -9.7318 3.4358 26 1 -3.2436 -10.2043 4.6596 27 6 0.2936 -6.7717 2.2445 28 6 0.6097 -5.2682 2.3958 29 1 1.2902 -4.9728 3.1944 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6732 2.1143 0.0004 34 1 4.5658 -2.8046 -1.0138 35 1 5.3234 -2.3459 0.5302 36 1 3.7941 -3.2567 0.5252 37 1 1.4116 -2.6721 2.0062 38 1 -1.8134 -5.8515 0.7502 39 1 -2.7108 -5.4420 2.2447 40 1 -4.8095 -7.3653 2.0515 41 1 0.5314 -7.1106 1.2362 42 1 0.8488 -7.3528 2.9808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960946707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:19 Heat of formation + Delta-G solvation = -36.884563 kcal Electronic energy + Delta-G solvation = -26166.146153 eV Core-core repulsion = 22306.367993 eV Total energy + Delta-G solvation = -3859.778160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29764 -41.20530 -39.87190 -39.05432 -37.05735 -36.10061 -34.44601 -33.77246 -32.06103 -29.92048 -29.13241 -28.73570 -27.55388 -25.65280 -23.78330 -23.11263 -22.26730 -21.97850 -20.85782 -19.60097 -19.32374 -18.81902 -18.21675 -17.83651 -17.64754 -16.77263 -16.61232 -15.80271 -15.62333 -15.23109 -15.19543 -14.91712 -14.80960 -14.60605 -14.49739 -14.45983 -13.93021 -13.76991 -13.48111 -13.42060 -13.33268 -13.17020 -12.87690 -12.81391 -12.70951 -12.09172 -11.99663 -11.87300 -11.68380 -11.64453 -11.55725 -11.23378 -10.81053 -10.70949 -9.77168 -9.56284 -8.90329 -7.90681 -5.27186 -0.72953 0.12547 0.99489 1.27257 1.48577 1.49389 1.58895 1.79373 2.02832 2.49317 2.86162 2.96520 3.12741 3.29666 3.44404 3.59848 3.66884 3.87005 3.95254 3.96641 4.12545 4.17248 4.33805 4.41040 4.43038 4.46955 4.56708 4.60087 4.68956 4.79492 4.92235 4.95080 5.03329 5.04310 5.12623 5.30325 5.40540 5.45778 5.54333 5.67306 5.87239 6.18855 6.24910 6.35885 7.01813 7.02111 7.69373 8.46982 9.22896 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030401 B = 0.002556 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.806884 B =10951.082427 C =11401.121146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 C -0.280 4.280 4 C 0.495 3.505 5 O -0.515 6.515 6 O -0.259 6.259 7 C 0.205 3.795 8 C -0.124 4.124 9 C -0.271 4.271 10 C 0.593 3.407 11 O -0.559 6.559 12 N -0.670 5.670 13 C 0.116 3.884 14 H 0.112 0.888 15 C -0.184 4.184 16 H 0.129 0.871 17 C 0.188 3.812 18 N -0.618 5.618 19 C -0.238 4.238 20 H 0.084 0.916 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.979 3.021 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.147 3.853 28 C -0.158 4.158 29 H 0.141 0.859 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.181 0.819 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.419 0.581 38 H 0.000 1.000 39 H 0.054 0.946 40 H 0.249 0.751 41 H 0.022 0.978 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.492 13.993 -1.015 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.068 3.932 3 C -0.299 4.299 4 C 0.350 3.650 5 O -0.409 6.409 6 O -0.167 6.167 7 C 0.154 3.846 8 C -0.179 4.179 9 C -0.276 4.276 10 C 0.379 3.621 11 O -0.437 6.437 12 N -0.319 5.319 13 C 0.010 3.990 14 H 0.129 0.871 15 C -0.205 4.205 16 H 0.146 0.854 17 C 0.062 3.938 18 N -0.341 5.341 19 C -0.367 4.367 20 H 0.101 0.899 21 C -0.257 4.257 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.190 1.190 27 C 0.021 3.979 28 C -0.179 4.179 29 H 0.159 0.841 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.198 0.802 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.257 0.743 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.579 13.984 -1.710 20.274 hybrid contribution -0.997 -0.333 0.569 1.195 sum 13.583 13.651 -1.141 19.291 Atomic orbital electron populations 1.21165 0.87749 1.04879 1.05258 1.20419 0.98310 0.89977 0.84459 1.22253 0.91262 1.01167 1.15255 1.19610 0.89110 0.80467 0.75803 1.90995 1.71684 1.27150 1.51035 1.83402 1.44942 1.14879 1.73453 1.23249 0.90292 0.85780 0.85232 1.21367 1.02272 0.87479 1.06772 1.19705 0.93078 0.94698 1.20096 1.17554 0.77903 0.83056 0.83570 1.90866 1.55237 1.65071 1.32558 1.45200 1.56369 1.21507 1.08834 1.21481 0.96186 0.85683 0.95688 0.87051 1.25109 0.91216 1.00277 1.03938 0.85358 1.21393 0.95183 0.83947 0.93265 1.45414 1.02392 1.24268 1.62061 1.19395 0.90470 1.08647 1.18151 0.89859 1.25737 0.98084 1.01785 1.00063 1.70092 1.07808 1.46085 1.35569 0.85055 0.78005 0.78436 0.77782 1.21257 1.22373 1.19043 1.21305 0.85142 0.93230 0.98174 1.24156 1.00607 0.93343 0.99754 0.84104 0.87180 0.87747 0.91700 0.80156 0.86588 0.86057 0.87576 0.74341 0.98246 0.92744 0.94159 0.95987 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.67 71.24 0.69 -1.11 16 2 C 0.07 1.12 5.93 -19.50 -0.12 1.00 16 3 C -0.28 -4.72 9.64 22.38 0.22 -4.51 16 4 C 0.49 11.03 7.93 68.46 0.54 11.57 16 5 O -0.52 -15.13 17.93 18.71 0.34 -14.80 16 6 O -0.26 -4.98 9.81 25.78 0.25 -4.72 16 7 C 0.20 3.13 7.03 25.53 0.18 3.31 16 8 C -0.12 -1.17 9.80 71.24 0.70 -0.48 16 9 C -0.27 -4.74 5.63 -20.09 -0.11 -4.85 16 10 C 0.59 12.86 4.23 86.69 0.37 13.23 16 11 O -0.56 -17.25 16.67 -4.04 -0.07 -17.31 16 12 N -0.67 -12.71 5.54 -445.69 -2.47 -15.17 16 13 C 0.12 3.14 5.93 44.99 0.27 3.41 16 14 H 0.11 3.69 7.40 -2.39 -0.02 3.67 16 15 C -0.18 -5.99 7.34 -8.73 -0.06 -6.05 16 16 H 0.13 3.64 8.14 -2.38 -0.02 3.62 16 17 C 0.19 8.81 5.76 87.74 0.51 9.31 16 18 N -0.62 -30.25 3.38 -681.33 -2.30 -32.55 16 19 C -0.24 -12.81 10.35 84.03 0.87 -11.94 16 20 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 21 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 22 N -0.95 -55.77 10.86 21.65 0.24 -55.54 16 23 Si 0.98 44.22 29.56 68.60 2.03 46.24 16 24 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 C 0.15 5.52 7.04 86.53 0.61 6.13 16 28 C -0.16 -4.46 6.97 -9.94 -0.07 -4.53 16 29 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.02 8.09 -2.39 -0.02 1.00 16 32 H 0.06 1.18 7.18 -2.39 -0.02 1.16 16 33 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 1.01 6.99 -2.38 -0.02 1.00 16 37 H 0.42 5.31 8.81 -92.71 -0.82 4.49 16 38 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 39 H 0.05 2.91 6.51 -2.39 -0.02 2.89 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -74.48 358.04 3.30 -71.18 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.25 Total: 11.19 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.04 Total: 11.48 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.54 Total: -103.27 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: 0.52 Total: -36.83 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -74.48 3.30 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960946707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.296 kcal (2) G-P(sol) polarization free energy of solvation -74.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds