Wall clock time and date at job start Tue Mar 31 2020 13:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35965 * 120.56362 * 2 1 4 4 C 1.40846 * 119.33887 * 180.25385 * 3 2 1 5 5 O 1.21851 * 119.75794 * 179.70049 * 4 3 2 6 6 O 1.34380 * 120.48016 * 359.42370 * 4 3 2 7 7 C 1.33721 * 121.21550 * 0.58740 * 6 4 3 8 8 C 1.50691 * 119.69479 * 179.67922 * 7 6 4 9 9 C 1.37592 * 120.61444 * 359.69821 * 7 6 4 10 10 C 1.47519 * 120.25983 * 179.97438 * 9 7 6 11 11 O 1.21599 * 120.00483 * 270.02551 * 10 9 7 12 12 N 1.34784 * 119.99458 * 90.02590 * 10 9 7 13 13 C 1.47860 * 126.94896 * 0.02619 * 12 10 9 14 14 C 1.56014 * 105.10729 * 181.97820 * 13 12 10 15 15 H 1.09000 * 116.24879 * 158.83443 * 14 13 12 16 16 C 1.57083 * 99.60589 * 32.80605 * 14 13 12 17 17 C 1.49293 * 126.93877 * 179.70763 * 12 10 9 18 18 H 1.09006 * 116.15564 * 16.73120 * 17 12 10 19 19 C 1.56016 * 104.09279 * 246.71862 * 17 12 10 20 20 N 1.47358 * 105.15065 * 288.60871 * 19 17 12 21 21 C 1.36939 * 126.79251 * 182.06190 * 20 19 17 22 22 H 1.07993 * 119.99972 * 173.95922 * 21 20 19 23 23 C 1.38809 * 119.99689 * 353.95559 * 21 20 19 24 24 N 1.31620 * 120.00373 * 6.46408 * 23 21 20 25 25 Si 1.86803 * 120.00093 * 186.45977 * 23 21 20 26 26 H 1.48495 * 109.47108 * 94.98422 * 25 23 21 27 27 H 1.48500 * 109.47185 * 214.99015 * 25 23 21 28 28 H 1.48510 * 109.46638 * 334.98599 * 25 23 21 29 29 H 1.09001 * 109.46854 * 90.00554 * 1 2 3 30 30 H 1.09000 * 109.46983 * 210.00005 * 1 2 3 31 31 H 1.08993 * 109.47222 * 330.00611 * 1 2 3 32 32 H 1.08001 * 120.33288 * 359.97319 * 3 2 1 33 33 H 1.08997 * 109.47559 * 270.01492 * 8 7 6 34 34 H 1.09003 * 109.47343 * 30.02655 * 8 7 6 35 35 H 1.09005 * 109.46948 * 150.01992 * 8 7 6 36 36 H 1.09004 * 110.31302 * 300.89173 * 13 12 10 37 37 H 1.09003 * 110.31584 * 62.96748 * 13 12 10 38 38 H 1.08997 * 112.36864 * 64.27245 * 16 14 13 39 39 H 1.08999 * 112.37112 * 191.62837 * 16 14 13 40 40 H 1.09004 * 110.31282 * 47.68140 * 19 17 12 41 41 H 1.09005 * 110.31513 * 169.75997 * 19 17 12 42 42 H 0.97000 * 120.00162 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1708 0.0000 4 6 3.6065 1.1407 -0.0054 5 8 4.2338 2.1853 -0.0110 6 8 4.2633 -0.0317 0.0011 7 6 3.6043 -1.1952 0.0011 8 6 4.3754 -2.4899 0.0011 9 6 2.2286 -1.2214 0.0006 10 6 1.5095 -2.5094 0.0001 11 8 1.2139 -3.0404 -1.0532 12 7 1.1803 -3.0978 1.1671 13 6 1.4611 -2.5920 2.5278 14 6 0.9085 -3.6878 3.4911 15 1 1.3178 -3.6925 4.5013 16 6 1.1805 -4.9653 2.6184 17 6 0.4525 -4.3889 1.3471 18 1 0.4065 -5.0402 0.4743 19 6 -0.9070 -3.9723 1.9893 20 7 -0.5743 -3.5673 3.3665 21 6 -1.4510 -3.1573 4.3353 22 1 -1.0996 -2.9779 5.3406 23 6 -2.7913 -2.9724 4.0251 24 7 -3.2447 -3.3115 2.8369 25 14 -3.9516 -2.2423 5.2940 26 1 -4.0646 -0.7777 5.0767 27 1 -5.2914 -2.8680 5.1576 28 1 -3.4209 -2.5011 6.6567 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6731 2.1144 -0.0004 33 1 4.5616 -2.8020 -1.0264 34 1 5.3257 -2.3468 0.5154 35 1 3.7965 -3.2576 0.5147 36 1 2.5345 -2.4681 2.6715 37 1 0.9461 -1.6457 2.6936 38 1 2.2442 -5.1339 2.4501 39 1 0.6850 -5.8516 3.0146 40 1 -1.3438 -3.1369 1.4420 41 1 -1.5950 -4.8176 2.0006 42 1 -4.1814 -3.1826 2.6203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032509822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:14 Heat of formation + Delta-G solvation = -17.013900 kcal Electronic energy + Delta-G solvation = -27931.151062 eV Core-core repulsion = 24072.234558 eV Total energy + Delta-G solvation = -3858.916504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18370 -40.27183 -38.35912 -37.74984 -35.90520 -33.79457 -32.93731 -31.56235 -29.28656 -28.88230 -28.71792 -27.90502 -25.36764 -24.62909 -23.50319 -22.07902 -21.35106 -20.06142 -19.08432 -18.40345 -17.98231 -17.05438 -16.85512 -16.49114 -16.11498 -15.47829 -14.85222 -14.55574 -14.23623 -14.03577 -13.91984 -13.67844 -13.51447 -13.41462 -13.29831 -12.84883 -12.50695 -12.49530 -12.32809 -12.03705 -11.82540 -11.79979 -11.48627 -11.16383 -10.99611 -10.89022 -10.73774 -10.52272 -10.41028 -10.37001 -10.17306 -9.84632 -9.73047 -8.79303 -8.47983 -8.22955 -7.04140 -5.88797 -3.22889 0.29287 1.26773 2.09350 2.64963 3.00574 3.22687 3.30481 3.36288 3.38625 3.97328 4.16972 4.32618 4.47223 4.64468 4.88826 4.95450 5.01099 5.05260 5.07834 5.20148 5.36059 5.44782 5.48097 5.49762 5.56052 5.58615 5.60427 5.70135 5.77541 5.99965 6.06272 6.11662 6.18190 6.25807 6.32737 6.45558 6.52579 6.95786 7.27727 7.36522 7.37422 7.61054 7.81509 7.99219 8.27501 8.99977 9.60358 10.28251 11.23385 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.004531 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.275876 B = 6177.619678 C = 6965.616450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.067 3.933 3 C -0.284 4.284 4 C 0.500 3.500 5 O -0.480 6.480 6 O -0.257 6.257 7 C 0.177 3.823 8 C -0.115 4.115 9 C -0.242 4.242 10 C 0.591 3.409 11 O -0.539 6.539 12 N -0.596 5.596 13 C 0.082 3.918 14 C 0.142 3.858 15 H 0.108 0.892 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.117 0.883 19 C 0.175 3.825 20 N -0.595 5.595 21 C -0.235 4.235 22 H 0.081 0.919 23 C -0.001 4.001 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.997 0.187 -3.703 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 C -0.303 4.303 4 C 0.353 3.647 5 O -0.371 6.371 6 O -0.166 6.166 7 C 0.127 3.873 8 C -0.171 4.171 9 C -0.246 4.246 10 C 0.377 3.623 11 O -0.417 6.417 12 N -0.329 5.329 13 C -0.043 4.043 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.191 4.191 17 C -0.004 4.004 18 H 0.134 0.866 19 C 0.050 3.950 20 N -0.319 5.319 21 C -0.363 4.363 22 H 0.099 0.901 23 C -0.199 4.199 24 N -0.563 5.563 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.180 0.820 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.063 0.519 -4.291 12.814 hybrid contribution -0.962 0.712 0.595 1.337 sum 11.100 1.231 -3.696 11.764 Atomic orbital electron populations 1.21101 0.88621 1.05222 1.04026 1.20369 0.97802 0.90517 0.84784 1.22220 0.92525 1.00285 1.15281 1.19259 0.88403 0.80662 0.76345 1.90990 1.70929 1.25758 1.49409 1.83362 1.44659 1.14611 1.74009 1.22695 0.90323 0.85453 0.88790 1.21094 1.01164 0.89408 1.05466 1.19927 0.92625 0.95812 1.16249 1.17030 0.79157 0.82951 0.83129 1.90806 1.55702 1.64688 1.30506 1.49266 1.55293 1.23178 1.05173 1.23367 0.98487 1.00342 0.82121 1.23168 0.86676 0.91024 0.95817 0.87444 1.24240 0.99048 0.99195 0.96663 1.24534 0.94839 0.83876 0.97189 0.86566 1.21837 0.89489 0.99292 0.84420 1.45101 0.99253 1.77542 1.10005 1.19042 0.88535 1.38718 0.89966 0.90123 1.24817 0.97041 1.01051 0.96948 1.69917 1.14457 1.51670 1.20253 0.86141 0.80494 0.78951 0.80407 1.21582 1.21711 1.20534 0.89069 0.89360 0.89727 0.81973 0.87813 0.88652 0.88117 0.92918 0.90916 0.91528 0.89577 0.93150 0.92771 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.67 36.01 0.35 -1.48 16 2 C 0.07 0.92 5.93 -104.05 -0.62 0.31 16 3 C -0.28 -3.78 9.64 -39.41 -0.38 -4.16 16 4 C 0.50 7.49 7.93 31.72 0.25 7.74 16 5 O -0.48 -8.46 17.93 -19.60 -0.35 -8.81 16 6 O -0.26 -3.50 9.81 -17.62 -0.17 -3.67 16 7 C 0.18 2.18 7.03 -34.55 -0.24 1.93 16 8 C -0.12 -1.02 9.80 36.00 0.35 -0.67 16 9 C -0.24 -3.44 4.90 -104.97 -0.51 -3.95 16 10 C 0.59 9.58 4.30 -12.47 -0.05 9.52 16 11 O -0.54 -10.31 17.46 5.28 0.09 -10.22 16 12 N -0.60 -9.52 2.92 -157.77 -0.46 -9.99 16 13 C 0.08 1.25 5.98 -1.68 -0.01 1.24 16 14 C 0.14 2.35 5.53 -62.55 -0.35 2.00 16 15 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 16 C -0.15 -2.21 6.84 -22.10 -0.15 -2.36 16 17 C 0.10 1.65 5.25 -62.35 -0.33 1.32 16 18 H 0.12 1.89 8.06 -51.93 -0.42 1.47 16 19 C 0.17 3.80 4.74 -1.96 -0.01 3.79 16 20 N -0.59 -13.05 3.01 -156.75 -0.47 -13.52 16 21 C -0.23 -5.84 10.36 -15.06 -0.16 -6.00 16 22 H 0.08 1.93 7.84 -52.49 -0.41 1.52 16 23 C 0.00 -0.04 5.49 -17.43 -0.10 -0.13 16 24 N -0.92 -25.13 10.58 55.49 0.59 -24.54 16 25 Si 0.91 20.73 29.56 -169.99 -5.02 15.71 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.47 7.18 -51.93 -0.37 1.10 16 31 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.94 6.99 -51.93 -0.36 0.58 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 1.26 7.53 -51.93 -0.39 0.87 16 41 H 0.05 1.32 7.60 -51.93 -0.39 0.92 16 42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -31.02 350.77 -8.18 -39.20 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.71 Total: 1.47 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.95 Total: 9.09 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.35 Total: -48.05 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.43 Total: -22.70 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.02 -8.18 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032509822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.183 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds