Wall clock time and date at job start Tue Mar 31 2020 13:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35965 * 120.56362 * 2 1 4 4 C 1.40846 * 119.33887 * 180.25385 * 3 2 1 5 5 O 1.21851 * 119.75794 * 179.70049 * 4 3 2 6 6 O 1.34380 * 120.48016 * 359.42370 * 4 3 2 7 7 C 1.33721 * 121.21550 * 0.58740 * 6 4 3 8 8 C 1.50691 * 119.69479 * 179.67922 * 7 6 4 9 9 C 1.37592 * 120.61444 * 359.69821 * 7 6 4 10 10 C 1.47519 * 120.25983 * 179.97438 * 9 7 6 11 11 O 1.21599 * 120.00483 * 270.02551 * 10 9 7 12 12 N 1.34784 * 119.99458 * 90.02590 * 10 9 7 13 13 C 1.47860 * 126.94896 * 0.02619 * 12 10 9 14 14 C 1.56014 * 105.10729 * 181.97820 * 13 12 10 15 15 H 1.09000 * 116.24879 * 158.83443 * 14 13 12 16 16 C 1.57083 * 99.60589 * 32.80605 * 14 13 12 17 17 C 1.49293 * 126.93877 * 179.70763 * 12 10 9 18 18 H 1.09006 * 116.15564 * 16.73120 * 17 12 10 19 19 C 1.56016 * 104.09279 * 246.71862 * 17 12 10 20 20 N 1.47358 * 105.15065 * 288.60871 * 19 17 12 21 21 C 1.36939 * 126.79251 * 182.06190 * 20 19 17 22 22 H 1.07993 * 119.99972 * 173.95922 * 21 20 19 23 23 C 1.38809 * 119.99689 * 353.95559 * 21 20 19 24 24 N 1.31620 * 120.00373 * 6.46408 * 23 21 20 25 25 Si 1.86803 * 120.00093 * 186.45977 * 23 21 20 26 26 H 1.48495 * 109.47108 * 94.98422 * 25 23 21 27 27 H 1.48500 * 109.47185 * 214.99015 * 25 23 21 28 28 H 1.48510 * 109.46638 * 334.98599 * 25 23 21 29 29 H 1.09001 * 109.46854 * 90.00554 * 1 2 3 30 30 H 1.09000 * 109.46983 * 210.00005 * 1 2 3 31 31 H 1.08993 * 109.47222 * 330.00611 * 1 2 3 32 32 H 1.08001 * 120.33288 * 359.97319 * 3 2 1 33 33 H 1.08997 * 109.47559 * 270.01492 * 8 7 6 34 34 H 1.09003 * 109.47343 * 30.02655 * 8 7 6 35 35 H 1.09005 * 109.46948 * 150.01992 * 8 7 6 36 36 H 1.09004 * 110.31302 * 300.89173 * 13 12 10 37 37 H 1.09003 * 110.31584 * 62.96748 * 13 12 10 38 38 H 1.08997 * 112.36864 * 64.27245 * 16 14 13 39 39 H 1.08999 * 112.37112 * 191.62837 * 16 14 13 40 40 H 1.09004 * 110.31282 * 47.68140 * 19 17 12 41 41 H 1.09005 * 110.31513 * 169.75997 * 19 17 12 42 42 H 0.97000 * 120.00162 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1708 0.0000 4 6 3.6065 1.1407 -0.0054 5 8 4.2338 2.1853 -0.0110 6 8 4.2633 -0.0317 0.0011 7 6 3.6043 -1.1952 0.0011 8 6 4.3754 -2.4899 0.0011 9 6 2.2286 -1.2214 0.0006 10 6 1.5095 -2.5094 0.0001 11 8 1.2139 -3.0404 -1.0532 12 7 1.1803 -3.0978 1.1671 13 6 1.4611 -2.5920 2.5278 14 6 0.9085 -3.6878 3.4911 15 1 1.3178 -3.6925 4.5013 16 6 1.1805 -4.9653 2.6184 17 6 0.4525 -4.3889 1.3471 18 1 0.4065 -5.0402 0.4743 19 6 -0.9070 -3.9723 1.9893 20 7 -0.5743 -3.5673 3.3665 21 6 -1.4510 -3.1573 4.3353 22 1 -1.0996 -2.9779 5.3406 23 6 -2.7913 -2.9724 4.0251 24 7 -3.2447 -3.3115 2.8369 25 14 -3.9516 -2.2423 5.2940 26 1 -4.0646 -0.7777 5.0767 27 1 -5.2914 -2.8680 5.1576 28 1 -3.4209 -2.5011 6.6567 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6731 2.1144 -0.0004 33 1 4.5616 -2.8020 -1.0264 34 1 5.3257 -2.3468 0.5154 35 1 3.7965 -3.2576 0.5147 36 1 2.5345 -2.4681 2.6715 37 1 0.9461 -1.6457 2.6936 38 1 2.2442 -5.1339 2.4501 39 1 0.6850 -5.8516 3.0146 40 1 -1.3438 -3.1369 1.4420 41 1 -1.5950 -4.8176 2.0006 42 1 -4.1814 -3.1826 2.6203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032509822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:14 Heat of formation + Delta-G solvation = -34.687021 kcal Electronic energy + Delta-G solvation = -27931.917426 eV Core-core repulsion = 24072.234558 eV Total energy + Delta-G solvation = -3859.682868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.30140 -41.63117 -39.69149 -38.99197 -37.05688 -35.46907 -34.02828 -33.09503 -30.77338 -30.28911 -29.96160 -28.92545 -26.96682 -25.85611 -24.96565 -23.14386 -22.75150 -21.44611 -20.51891 -19.53832 -19.35808 -18.32181 -18.18430 -17.78959 -17.50536 -16.95923 -16.19427 -16.04035 -15.61531 -15.23597 -15.08755 -14.80681 -14.75927 -14.60133 -14.51278 -13.90802 -13.82816 -13.59758 -13.45813 -13.44709 -13.33546 -13.12853 -12.87621 -12.80139 -12.72453 -12.32980 -12.11832 -12.03143 -11.85907 -11.64227 -11.56238 -11.52568 -11.15964 -10.70420 -9.62438 -9.54580 -8.87367 -7.84467 -5.18100 -0.74509 0.13350 1.01578 1.36696 1.47499 1.48818 1.56758 1.81970 2.04509 2.49165 2.95339 3.08381 3.31506 3.34762 3.48391 3.58167 3.80648 3.88870 3.93521 4.04759 4.16949 4.23474 4.28788 4.43928 4.45216 4.53626 4.59174 4.61012 4.68010 4.82546 4.93718 4.94844 4.99567 5.02001 5.06856 5.16062 5.28043 5.47345 5.57092 5.70072 5.85987 6.13364 6.22536 6.52194 6.97769 7.06749 7.73810 8.43115 9.26520 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.004531 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.275876 B = 6177.619678 C = 6965.616450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.067 3.933 3 C -0.281 4.281 4 C 0.500 3.500 5 O -0.512 6.512 6 O -0.254 6.254 7 C 0.201 3.799 8 C -0.117 4.117 9 C -0.268 4.268 10 C 0.599 3.401 11 O -0.572 6.572 12 N -0.594 5.594 13 C 0.090 3.910 14 C 0.135 3.865 15 H 0.134 0.866 16 C -0.127 4.127 17 C 0.103 3.897 18 H 0.123 0.877 19 C 0.186 3.814 20 N -0.615 5.615 21 C -0.229 4.229 22 H 0.092 0.908 23 C -0.062 4.062 24 N -0.951 5.951 25 Si 0.967 3.033 26 H -0.294 1.294 27 H -0.302 1.302 28 H -0.264 1.264 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.178 0.822 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.004 0.996 41 H 0.015 0.985 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.102 -0.136 -2.723 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.065 3.935 3 C -0.301 4.301 4 C 0.355 3.645 5 O -0.405 6.405 6 O -0.162 6.162 7 C 0.151 3.849 8 C -0.172 4.172 9 C -0.272 4.272 10 C 0.387 3.613 11 O -0.452 6.452 12 N -0.326 5.326 13 C -0.034 4.034 14 C 0.028 3.972 15 H 0.151 0.849 16 C -0.167 4.167 17 C 0.001 3.999 18 H 0.140 0.860 19 C 0.060 3.940 20 N -0.339 5.339 21 C -0.358 4.358 22 H 0.110 0.890 23 C -0.256 4.256 24 N -0.600 5.600 25 Si 0.796 3.204 26 H -0.221 1.221 27 H -0.230 1.230 28 H -0.188 1.188 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.195 0.805 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.022 0.978 41 H 0.033 0.967 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.225 0.187 -3.272 15.574 hybrid contribution -1.870 0.761 0.285 2.039 sum 13.355 0.948 -2.987 13.718 Atomic orbital electron populations 1.21029 0.89014 1.04223 1.04191 1.20361 0.97573 0.90800 0.84734 1.22231 0.91802 1.00685 1.15335 1.19390 0.88675 0.80637 0.75820 1.90977 1.71497 1.26982 1.51093 1.83381 1.44595 1.14715 1.73494 1.23280 0.89920 0.86018 0.85654 1.21343 1.02015 0.87011 1.06863 1.19793 0.93543 0.94725 1.19130 1.17176 0.78559 0.83070 0.82452 1.90787 1.57106 1.65686 1.31635 1.49243 1.54823 1.22841 1.05686 1.23232 1.00617 0.98447 0.81098 1.23584 0.83236 0.92473 0.97880 0.84860 1.24148 1.01146 0.97717 0.93642 1.24357 0.92410 0.84734 0.98431 0.85954 1.21453 0.91626 0.96062 0.84873 1.45335 1.01861 1.77308 1.09380 1.19466 0.88978 1.36331 0.90986 0.89030 1.25530 0.98866 1.02668 0.98493 1.70136 1.13810 1.53922 1.22149 0.85224 0.78253 0.77586 0.79295 1.22120 1.22971 1.18802 0.88421 0.92822 0.88137 0.80476 0.86269 0.85661 0.87889 0.88525 0.93422 0.87140 0.89942 0.97831 0.96675 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.67 71.24 0.69 -2.88 16 2 C 0.07 1.79 5.93 -19.50 -0.12 1.67 16 3 C -0.28 -7.11 9.64 22.38 0.22 -6.90 16 4 C 0.50 14.12 7.93 68.46 0.54 14.66 16 5 O -0.51 -17.47 17.93 18.74 0.34 -17.14 16 6 O -0.25 -6.19 9.81 25.82 0.25 -5.94 16 7 C 0.20 4.32 7.03 25.53 0.18 4.50 16 8 C -0.12 -1.55 9.80 71.23 0.70 -0.85 16 9 C -0.27 -7.15 4.90 -20.09 -0.10 -7.25 16 10 C 0.60 18.75 4.30 86.69 0.37 19.13 16 11 O -0.57 -21.64 17.46 -4.03 -0.07 -21.71 16 12 N -0.59 -18.12 2.92 -771.33 -2.25 -20.37 16 13 C 0.09 2.52 5.98 87.16 0.52 3.04 16 14 C 0.13 4.08 5.53 46.93 0.26 4.34 16 15 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 16 C -0.13 -3.29 6.84 33.60 0.23 -3.06 16 17 C 0.10 3.41 5.25 47.06 0.25 3.66 16 18 H 0.12 3.91 8.06 -2.38 -0.02 3.89 16 19 C 0.19 8.41 4.74 87.26 0.41 8.82 16 20 N -0.61 -27.00 3.01 -649.84 -1.95 -28.96 16 21 C -0.23 -11.42 10.36 84.03 0.87 -10.55 16 22 H 0.09 4.28 7.84 -2.91 -0.02 4.25 16 23 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 24 N -0.95 -55.00 10.58 21.65 0.23 -54.77 16 25 Si 0.97 43.55 29.56 68.60 2.03 45.58 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 29 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 1.88 7.18 -2.39 -0.02 1.86 16 31 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 32 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.41 6.99 -2.38 -0.02 1.40 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.00 0.19 7.53 -2.39 -0.02 0.17 16 41 H 0.02 0.79 7.60 -2.38 -0.02 0.77 16 42 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -71.58 350.77 5.10 -66.48 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.04 Total: 11.35 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 5.49 Total: 25.47 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.98 Total: -104.09 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: 0.52 Total: -44.78 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.58 5.10 -66.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032509822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.789 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds