Wall clock time and date at job start Tue Mar 31 2020 12:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00058 * 2 1 4 4 H 1.48502 * 109.46856 * 90.00228 * 3 2 1 5 5 H 1.48502 * 109.46823 * 209.99892 * 3 2 1 6 6 H 1.48494 * 109.47174 * 330.00099 * 3 2 1 7 7 C 1.38812 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99909 * 22.56697 * 7 2 1 9 9 N 1.36940 * 119.99667 * 202.56644 * 7 2 1 10 10 C 1.47168 * 135.99942 * 5.56487 * 9 7 2 11 11 C 1.53203 * 87.73716 * 153.40224 * 10 9 7 12 12 C 1.47164 * 135.99135 * 185.92650 * 9 7 2 13 13 C 1.52786 * 113.88716 * 139.43876 * 11 10 9 14 14 N 1.47352 * 108.04821 * 181.34399 * 13 11 10 15 15 C 1.34779 * 121.05728 * 131.77228 * 14 13 11 16 16 O 1.21781 * 120.00273 * 354.10722 * 15 14 13 17 17 C 1.41555 * 120.00152 * 174.10013 * 15 14 13 18 18 C 1.35625 * 120.00001 * 188.16144 * 17 15 14 19 19 C 1.41602 * 120.00395 * 25.17421 * 18 17 15 20 20 C 1.37946 * 126.10740 * 188.38506 * 19 18 17 21 21 C 1.40309 * 106.53315 * 179.97438 * 20 19 18 22 22 C 1.35162 * 107.20297 * 359.97438 * 21 20 19 23 23 O 1.34019 * 109.03191 * 359.75364 * 22 21 20 24 24 C 1.47126 * 117.88477 * 311.75270 * 14 13 11 25 25 C 1.53232 * 108.72244 * 52.29680 * 24 14 13 26 26 O 1.42353 * 114.55407 * 271.98672 * 11 10 9 27 27 H 0.96998 * 120.00527 * 174.95982 * 1 2 3 28 28 H 1.09002 * 113.49127 * 268.09219 * 10 9 7 29 29 H 1.09004 * 113.49502 * 38.60674 * 10 9 7 30 30 H 1.08999 * 113.49502 * 321.39228 * 12 9 7 31 31 H 1.09007 * 113.48943 * 91.84429 * 12 9 7 32 32 H 1.09002 * 109.74927 * 300.98808 * 13 11 10 33 33 H 1.09004 * 109.74228 * 61.71175 * 13 11 10 34 34 H 1.07999 * 119.99751 * 8.16572 * 17 15 14 35 35 H 1.08003 * 119.99753 * 205.18086 * 18 17 15 36 36 H 1.08007 * 126.73163 * 359.97438 * 20 19 18 37 37 H 1.07994 * 126.40121 * 179.97438 * 21 20 19 38 38 H 1.07996 * 125.48024 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.59401 * 292.52595 * 24 14 13 40 40 H 1.09006 * 109.59651 * 172.06643 * 24 14 13 41 41 H 1.08998 * 109.48663 * 185.84056 * 25 24 14 42 42 H 1.08996 * 109.49208 * 65.76762 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5322 -2.1015 -0.3599 9 7 3.3010 -1.2477 0.4546 10 6 4.2321 -0.3040 1.0936 11 6 4.9298 -1.5136 1.7238 12 6 4.3675 -2.2600 0.5133 13 6 6.4542 -1.4109 1.7371 14 7 6.9897 -2.6459 2.3365 15 6 7.9898 -3.3289 1.7449 16 8 8.3928 -2.9895 0.6470 17 6 8.5719 -4.4407 2.3999 18 6 9.6824 -5.0255 1.8859 19 6 10.5593 -4.2786 1.0624 20 6 11.6264 -4.7800 0.3462 21 6 12.2070 -3.6905 -0.3205 22 6 11.4889 -2.5930 0.0062 23 8 10.4961 -2.9504 0.8326 24 6 6.3983 -3.1096 3.6013 25 6 4.8773 -3.1892 3.4331 26 8 4.3845 -1.9271 2.9720 27 1 -0.4851 -0.8367 -0.0738 28 1 4.8576 0.2371 0.3836 29 1 3.7545 0.3520 1.8214 30 1 4.0046 -3.2603 0.7497 31 1 5.0288 -2.2452 -0.3532 32 1 6.8252 -1.3053 0.7176 33 1 6.7601 -0.5502 2.3320 34 1 8.1316 -4.8232 3.3089 35 1 9.8978 -6.0610 2.1047 36 1 11.9512 -5.8093 0.3065 37 1 13.0671 -3.7227 -0.9729 38 1 11.6817 -1.5902 -0.3452 39 1 6.6416 -2.4066 4.3980 40 1 6.7909 -4.0960 3.8486 41 1 4.4177 -3.4311 4.3913 42 1 4.6319 -3.9631 2.7058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053134109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:41 Heat of formation + Delta-G solvation = 30.614693 kcal Electronic energy + Delta-G solvation = -27161.295406 eV Core-core repulsion = 23304.444233 eV Total energy + Delta-G solvation = -3856.851173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.33462 -41.90633 -40.34979 -38.02963 -35.77900 -35.08187 -34.61373 -33.77941 -31.86781 -30.08269 -29.37195 -27.77313 -27.20658 -24.78220 -24.55439 -23.09973 -22.56312 -21.66134 -20.63532 -19.71372 -19.57262 -18.86503 -17.91661 -17.62605 -17.27152 -16.90270 -16.54772 -16.20853 -16.02492 -15.58365 -15.41958 -15.37363 -15.23892 -15.03596 -14.84125 -14.16058 -14.07726 -13.65296 -13.54173 -13.40228 -13.23795 -12.89048 -12.77337 -12.62050 -12.50671 -12.17400 -11.83511 -11.62613 -11.42957 -11.26810 -10.89983 -10.78920 -10.73169 -10.60933 -9.55048 -9.31234 -8.76672 -8.68273 -5.47729 -0.55688 1.30959 1.37725 1.49497 1.64931 1.79886 1.95965 2.32805 2.47815 2.50873 2.53031 2.87352 3.10684 3.37530 3.62619 3.78008 3.85307 4.04538 4.09560 4.12953 4.18382 4.24364 4.31892 4.44670 4.48738 4.54278 4.57317 4.61482 4.65696 4.70932 4.82381 4.88494 4.89619 4.94446 5.07890 5.11886 5.13138 5.34091 5.41607 5.66620 5.89808 6.24729 6.31254 6.44250 6.64037 7.23574 7.28634 8.21963 8.82564 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.003387 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.953754 B = 8264.100034 C = 8969.204500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.077 4.077 3 Si 1.097 2.903 4 H -0.271 1.271 5 H -0.261 1.261 6 H -0.294 1.294 7 C -0.301 4.301 8 H 0.045 0.955 9 N -0.644 5.644 10 C 0.111 3.889 11 C 0.089 3.911 12 C 0.101 3.899 13 C 0.114 3.886 14 N -0.615 5.615 15 C 0.536 3.464 16 O -0.567 6.567 17 C -0.246 4.246 18 C 0.026 3.974 19 C -0.044 4.044 20 C -0.166 4.166 21 C -0.239 4.239 22 C -0.031 4.031 23 O -0.153 6.153 24 C 0.078 3.922 25 C 0.036 3.964 26 O -0.364 6.364 27 H 0.247 0.753 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.176 0.824 35 H 0.201 0.799 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.219 0.781 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.406 -11.249 9.559 32.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.270 4.270 3 Si 0.921 3.079 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.221 1.221 7 C -0.429 4.429 8 H 0.063 0.937 9 N -0.372 5.372 10 C -0.014 4.014 11 C 0.047 3.953 12 C -0.025 4.025 13 C -0.011 4.011 14 N -0.348 5.348 15 C 0.331 3.669 16 O -0.449 6.449 17 C -0.266 4.266 18 C 0.006 3.994 19 C -0.093 4.093 20 C -0.185 4.185 21 C -0.258 4.258 22 C -0.102 4.102 23 O -0.046 6.046 24 C -0.044 4.044 25 C -0.040 4.040 26 O -0.283 6.283 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.194 0.806 35 H 0.218 0.782 36 H 0.197 0.803 37 H 0.188 0.812 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 27.801 -9.171 9.206 30.688 hybrid contribution -0.536 -1.915 -0.990 2.221 sum 27.265 -11.086 8.216 30.558 Atomic orbital electron populations 1.71022 1.06709 1.28890 1.53581 1.27075 0.96348 1.04362 0.99186 0.83312 0.74498 0.72161 0.77914 1.19696 1.18610 1.22120 1.19876 0.86310 0.95625 1.41057 0.93676 1.46132 1.08071 1.11747 1.71232 1.22793 0.90716 0.93538 0.94400 1.22602 0.91636 0.96507 0.84534 1.22985 0.89380 0.94027 0.96108 1.21808 0.90296 0.87946 1.01022 1.48197 1.36482 1.25367 1.24786 1.17731 0.79938 0.83326 0.85886 1.90845 1.62955 1.69164 1.21907 1.22341 1.01180 0.99615 1.03501 1.21274 0.90372 0.98715 0.89020 1.20503 1.00605 0.82299 1.05932 1.22764 0.96132 1.01536 0.98109 1.22091 1.04793 0.92352 1.06530 1.24993 0.88748 1.02116 0.94311 1.84492 1.43344 1.24815 1.51999 1.22683 0.92679 1.03791 0.85235 1.23291 0.94498 0.84963 1.01284 1.87926 1.67498 1.38229 1.34639 0.94371 0.90600 0.92487 0.94412 0.93505 0.89203 0.88901 0.80645 0.78189 0.80312 0.81180 0.76490 0.88716 0.84918 0.84881 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.98 13.70 21.65 0.30 -63.68 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 1.10 55.12 25.59 68.60 1.76 56.87 16 4 H -0.27 -12.67 6.85 99.48 0.68 -11.99 16 5 H -0.26 -11.92 6.27 99.48 0.62 -11.29 16 6 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 7 C -0.30 -18.76 10.96 84.03 0.92 -17.84 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 N -0.64 -34.01 3.62 -738.72 -2.67 -36.68 16 10 C 0.11 4.83 5.13 83.42 0.43 5.25 16 11 C 0.09 3.29 1.29 -10.82 -0.01 3.28 16 12 C 0.10 4.40 7.90 83.33 0.66 5.06 16 13 C 0.11 3.39 5.85 86.15 0.50 3.89 16 14 N -0.61 -15.38 3.03 -828.62 -2.51 -17.89 16 15 C 0.54 14.14 7.01 85.06 0.60 14.74 16 16 O -0.57 -19.44 12.14 19.50 0.24 -19.20 16 17 C -0.25 -4.16 9.18 22.48 0.21 -3.95 16 18 C 0.03 0.38 9.84 22.49 0.22 0.60 16 19 C -0.04 -0.93 6.08 23.03 0.14 -0.79 16 20 C -0.17 -2.83 10.90 22.70 0.25 -2.58 16 21 C -0.24 -4.13 10.87 22.06 0.24 -3.89 16 22 C -0.03 -0.64 12.06 67.11 0.81 0.17 16 23 O -0.15 -4.04 6.94 17.96 0.12 -3.91 16 24 C 0.08 1.35 6.46 86.34 0.56 1.91 16 25 C 0.04 0.87 6.90 72.06 0.50 1.36 16 26 O -0.36 -13.07 10.55 -148.98 -1.57 -14.64 16 27 H 0.25 16.59 8.73 -92.71 -0.81 15.78 16 28 H 0.08 3.04 7.24 -2.39 -0.02 3.02 16 29 H 0.06 2.58 6.49 -2.39 -0.02 2.56 16 30 H 0.04 1.67 7.36 -2.39 -0.02 1.65 16 31 H 0.05 2.02 7.93 -2.38 -0.02 2.01 16 32 H 0.09 2.96 6.87 -2.39 -0.02 2.94 16 33 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.18 1.47 5.84 -2.91 -0.02 1.45 16 35 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.13 1.24 5.46 -2.38 -0.01 1.22 16 41 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.13 7.30 -2.39 -0.02 1.11 16 Total: -1.00 -87.95 339.67 3.04 -84.92 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.89 Total: 11.35 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.48 Total: 2.87 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -4.88 Total: -118.25 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.21 Total: -37.76 kcal Atomic # 14 Polarization: 55.12 SS G_CDS: 1.76 Total: 56.87 kcal Total: -87.95 3.04 -84.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053134109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.534 kcal (2) G-P(sol) polarization free energy of solvation -87.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds