Wall clock time and date at job start Tue Mar 31 2020 12:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47581 * 299.99977 * 3 2 1 6 6 H 1.48508 * 109.47145 * 60.00056 * 3 2 1 7 7 C 1.38807 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99784 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00282 * 359.97438 * 7 2 1 10 10 C 1.47675 * 134.45686 * 179.97438 * 9 7 2 11 11 C 1.53444 * 85.97899 * 204.26607 * 10 9 7 12 12 C 1.47670 * 134.45531 * 359.95617 * 9 7 2 13 13 C 1.52455 * 113.60684 * 222.53995 * 11 10 9 14 14 N 1.47336 * 108.28682 * 180.20413 * 13 11 10 15 15 C 1.34774 * 121.05553 * 228.32164 * 14 13 11 16 16 O 1.21783 * 120.00066 * 184.54217 * 15 14 13 17 17 C 1.41553 * 119.99879 * 4.53721 * 15 14 13 18 18 C 1.35627 * 119.99641 * 174.69345 * 17 15 14 19 19 C 1.41606 * 119.99599 * 180.02562 * 18 17 15 20 20 C 1.37952 * 126.10143 * 179.97438 * 19 18 17 21 21 C 1.40321 * 106.52809 * 179.76083 * 20 19 18 22 22 C 1.35153 * 107.20106 * 0.36069 * 21 20 19 23 23 O 1.34017 * 109.03829 * 359.63574 * 22 21 20 24 24 C 1.47132 * 117.88924 * 48.05194 * 14 13 11 25 25 C 1.53226 * 108.72449 * 308.04394 * 24 14 13 26 26 O 1.42482 * 113.80935 * 91.24980 * 11 10 9 27 27 H 0.96997 * 120.00138 * 359.97438 * 1 2 3 28 28 H 1.09001 * 113.79026 * 90.00272 * 10 9 7 29 29 H 1.08996 * 113.89825 * 318.54349 * 10 9 7 30 30 H 1.09001 * 113.79524 * 41.47979 * 12 9 7 31 31 H 1.08997 * 113.79633 * 270.00272 * 12 9 7 32 32 H 1.08998 * 109.69033 * 60.45777 * 13 11 10 33 33 H 1.09005 * 109.57395 * 299.87936 * 13 11 10 34 34 H 1.07992 * 119.99930 * 354.69198 * 17 15 14 35 35 H 1.08000 * 120.00110 * 359.97438 * 18 17 15 36 36 H 1.08001 * 126.73813 * 0.02562 * 20 19 18 37 37 H 1.08002 * 126.39809 * 180.21932 * 21 20 19 38 38 H 1.08007 * 125.47899 * 179.90733 * 22 21 20 39 39 H 1.08998 * 109.59501 * 67.81420 * 24 14 13 40 40 H 1.09003 * 109.59059 * 188.27351 * 24 14 13 41 41 H 1.08996 * 109.49125 * 174.09005 * 25 24 14 42 42 H 1.08998 * 109.49140 * 294.14536 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7214 -3.8107 -0.0015 11 6 0.3477 -4.0808 -0.6296 12 6 -0.1043 -2.7567 0.0007 13 6 -0.3604 -5.2994 -0.0485 14 7 -1.6558 -5.4518 -0.7337 15 6 -2.7930 -5.6433 -0.0362 16 8 -3.8399 -5.8494 -0.6232 17 6 -2.7704 -5.6049 1.3786 18 6 -3.9295 -5.6898 2.0778 19 6 -3.9070 -5.6509 3.4931 20 6 -5.0042 -5.7263 4.3259 21 6 -4.5145 -5.6543 5.6389 22 6 -3.1709 -5.5324 5.5582 23 8 -2.8085 -5.5336 4.2680 24 6 -1.6693 -5.3823 -2.2033 25 6 -0.9506 -4.1020 -2.6419 26 8 0.3537 -4.0657 -2.0543 27 1 -0.4850 0.8400 0.0004 28 1 1.8400 -4.2348 0.9956 29 1 2.5588 -4.0357 -0.6620 30 1 -0.7174 -2.1425 -0.6588 31 1 -0.5291 -2.8670 0.9984 32 1 -0.5235 -5.1548 1.0195 33 1 0.2492 -6.1882 -0.2116 34 1 -1.8304 -5.5080 1.9012 35 1 -4.8696 -5.7863 1.5551 36 1 -6.0370 -5.8260 4.0263 37 1 -5.1018 -5.6876 6.5447 38 1 -2.4972 -5.4517 6.3986 39 1 -1.1541 -6.2500 -2.6151 40 1 -2.6996 -5.3632 -2.5588 41 1 -0.8608 -4.0893 -3.7280 42 1 -1.5220 -3.2337 -2.3139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053134110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:48 Heat of formation + Delta-G solvation = 35.999976 kcal Electronic energy + Delta-G solvation = -26860.386161 eV Core-core repulsion = 23003.768512 eV Total energy + Delta-G solvation = -3856.617649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.70722 -40.48648 -38.88492 -36.13666 -34.51763 -34.27410 -33.21601 -32.25467 -30.32486 -29.09734 -27.78550 -26.01506 -25.17658 -24.53163 -22.78373 -22.09070 -21.68033 -20.35890 -19.07140 -18.55605 -17.91435 -16.95697 -16.85132 -16.28560 -16.23677 -15.57626 -15.17450 -14.95148 -14.83440 -14.34852 -14.15235 -13.87061 -13.43844 -13.27802 -13.19245 -13.01550 -12.82323 -12.61595 -12.36763 -12.32121 -11.68361 -11.33631 -11.15932 -10.88647 -10.80894 -10.76258 -10.63671 -10.25360 -10.09475 -10.01210 -9.68203 -9.57090 -9.25471 -8.84395 -8.32227 -8.03036 -6.89592 -5.76175 -3.08762 0.33668 1.97142 2.54158 2.78503 3.04718 3.39549 3.44612 3.47392 3.47494 4.07101 4.43679 4.46845 4.70758 4.74972 4.90998 4.97949 5.03083 5.13770 5.20165 5.25674 5.38336 5.44275 5.49217 5.56296 5.59665 5.70352 5.76830 5.83835 5.89831 5.98197 6.08141 6.13694 6.27476 6.28781 6.45884 6.47887 6.54684 6.88299 6.95511 7.17979 7.45362 7.50184 7.81529 7.97317 8.22445 9.03726 9.70597 10.56056 11.40931 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.004068 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.440113 B = 6881.281701 C = 8550.819040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.150 3.850 13 C 0.090 3.910 14 N -0.603 5.603 15 C 0.555 3.445 16 O -0.555 6.555 17 C -0.201 4.201 18 C 0.005 3.995 19 C -0.005 4.005 20 C -0.167 4.167 21 C -0.221 4.221 22 C -0.018 4.018 23 O -0.163 6.163 24 C 0.080 3.920 25 C 0.047 3.953 26 O -0.342 6.342 27 H 0.253 0.747 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.206 0.794 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -14.748 6.566 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.009 3.991 11 C 0.007 3.993 12 C 0.024 3.976 13 C -0.034 4.034 14 N -0.336 5.336 15 C 0.348 3.652 16 O -0.437 6.437 17 C -0.221 4.221 18 C -0.015 4.015 19 C -0.054 4.054 20 C -0.187 4.187 21 C -0.240 4.240 22 C -0.088 4.088 23 O -0.058 6.058 24 C -0.043 4.043 25 C -0.030 4.030 26 O -0.259 6.259 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.223 0.777 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.390 -14.460 5.998 17.311 hybrid contribution 0.141 1.021 0.505 1.148 sum -7.249 -13.439 6.503 16.596 Atomic orbital electron populations 1.69825 1.05054 1.25216 1.56828 1.24768 0.95647 0.97511 1.02439 0.86043 0.78756 0.83710 0.77235 1.20407 1.21705 1.21790 1.19040 0.90292 0.81726 1.43610 0.90036 1.45752 1.01898 0.99131 1.86040 1.22493 0.93315 0.86774 0.96481 1.23584 0.99081 0.94335 0.82320 1.22693 0.88749 0.89170 0.96960 1.22424 0.83559 0.99340 0.98062 1.48040 1.07416 1.70981 1.07139 1.16910 0.83167 0.77072 0.88037 1.90796 1.30320 1.50501 1.72034 1.22224 0.99915 1.05629 0.94367 1.20638 0.99977 0.93234 0.87610 1.19901 0.84391 1.09424 0.91728 1.22346 0.99333 1.04577 0.92398 1.21775 0.94752 1.08944 0.98528 1.24343 0.96590 1.03759 0.84093 1.84134 1.34687 1.69835 1.17119 1.22284 1.03037 0.99137 0.79816 1.22899 0.85403 0.96225 0.98498 1.87926 1.26048 1.94286 1.17678 0.93720 0.93305 0.92532 0.90488 0.95087 0.88525 0.90792 0.84707 0.82299 0.82674 0.82999 0.77718 0.90928 0.88340 0.88079 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.67 11.39 55.49 0.63 -27.04 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 N -0.60 -15.50 3.70 -180.32 -0.67 -16.17 16 10 C 0.14 2.73 8.33 -3.18 -0.03 2.70 16 11 C 0.05 0.92 1.21 -90.53 -0.11 0.81 16 12 C 0.15 3.54 6.64 -3.17 -0.02 3.52 16 13 C 0.09 1.34 5.64 -3.86 -0.02 1.32 16 14 N -0.60 -9.32 3.03 -176.12 -0.53 -9.86 16 15 C 0.56 8.87 7.47 -15.00 -0.11 8.76 16 16 O -0.55 -10.02 15.61 5.11 0.08 -9.94 16 17 C -0.20 -2.80 8.80 -39.25 -0.35 -3.14 16 18 C 0.01 0.07 9.39 -39.23 -0.37 -0.30 16 19 C -0.01 -0.06 6.84 -38.40 -0.26 -0.32 16 20 C -0.17 -1.68 10.90 -38.90 -0.42 -2.11 16 21 C -0.22 -1.96 10.87 -39.90 -0.43 -2.39 16 22 C -0.02 -0.17 12.06 29.63 0.36 0.19 16 23 O -0.16 -1.98 10.18 4.70 0.05 -1.93 16 24 C 0.08 1.15 6.58 -3.58 -0.02 1.13 16 25 C 0.05 0.77 6.88 37.27 0.26 1.02 16 26 O -0.34 -6.67 10.52 -35.23 -0.37 -7.04 16 27 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 2.08 6.31 -51.93 -0.33 1.75 16 31 H 0.03 0.74 7.92 -51.93 -0.41 0.33 16 32 H 0.10 1.35 5.20 -51.93 -0.27 1.08 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.14 1.77 5.49 -52.49 -0.29 1.48 16 35 H 0.16 1.85 7.47 -52.49 -0.39 1.46 16 36 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.21 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.41 7.09 -51.93 -0.37 1.04 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 1.12 7.19 -51.93 -0.37 0.74 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -35.03 350.77 -7.70 -42.73 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.36 Total: 2.11 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.79 Total: 4.52 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.57 Total: -53.07 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.24 Total: -18.91 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.03 -7.70 -42.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053134110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.731 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds