Wall clock time and date at job start Tue Mar 31 2020 12:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47581 * 299.99977 * 3 2 1 6 6 H 1.48508 * 109.47145 * 60.00056 * 3 2 1 7 7 C 1.38807 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99784 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00282 * 359.97438 * 7 2 1 10 10 C 1.47675 * 134.45686 * 179.97438 * 9 7 2 11 11 C 1.53444 * 85.97899 * 204.26607 * 10 9 7 12 12 C 1.47670 * 134.45531 * 359.95617 * 9 7 2 13 13 C 1.52455 * 113.60684 * 222.53995 * 11 10 9 14 14 N 1.47336 * 108.28682 * 180.20413 * 13 11 10 15 15 C 1.34774 * 121.05553 * 228.32164 * 14 13 11 16 16 O 1.21783 * 120.00066 * 184.54217 * 15 14 13 17 17 C 1.41553 * 119.99879 * 4.53721 * 15 14 13 18 18 C 1.35627 * 119.99641 * 174.69345 * 17 15 14 19 19 C 1.41606 * 119.99599 * 180.02562 * 18 17 15 20 20 C 1.37952 * 126.10143 * 179.97438 * 19 18 17 21 21 C 1.40321 * 106.52809 * 179.76083 * 20 19 18 22 22 C 1.35153 * 107.20106 * 0.36069 * 21 20 19 23 23 O 1.34017 * 109.03829 * 359.63574 * 22 21 20 24 24 C 1.47132 * 117.88924 * 48.05194 * 14 13 11 25 25 C 1.53226 * 108.72449 * 308.04394 * 24 14 13 26 26 O 1.42482 * 113.80935 * 91.24980 * 11 10 9 27 27 H 0.96997 * 120.00138 * 359.97438 * 1 2 3 28 28 H 1.09001 * 113.79026 * 90.00272 * 10 9 7 29 29 H 1.08996 * 113.89825 * 318.54349 * 10 9 7 30 30 H 1.09001 * 113.79524 * 41.47979 * 12 9 7 31 31 H 1.08997 * 113.79633 * 270.00272 * 12 9 7 32 32 H 1.08998 * 109.69033 * 60.45777 * 13 11 10 33 33 H 1.09005 * 109.57395 * 299.87936 * 13 11 10 34 34 H 1.07992 * 119.99930 * 354.69198 * 17 15 14 35 35 H 1.08000 * 120.00110 * 359.97438 * 18 17 15 36 36 H 1.08001 * 126.73813 * 0.02562 * 20 19 18 37 37 H 1.08002 * 126.39809 * 180.21932 * 21 20 19 38 38 H 1.08007 * 125.47899 * 179.90733 * 22 21 20 39 39 H 1.08998 * 109.59501 * 67.81420 * 24 14 13 40 40 H 1.09003 * 109.59059 * 188.27351 * 24 14 13 41 41 H 1.08996 * 109.49125 * 174.09005 * 25 24 14 42 42 H 1.08998 * 109.49140 * 294.14536 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7214 -3.8107 -0.0015 11 6 0.3477 -4.0808 -0.6296 12 6 -0.1043 -2.7567 0.0007 13 6 -0.3604 -5.2994 -0.0485 14 7 -1.6558 -5.4518 -0.7337 15 6 -2.7930 -5.6433 -0.0362 16 8 -3.8399 -5.8494 -0.6232 17 6 -2.7704 -5.6049 1.3786 18 6 -3.9295 -5.6898 2.0778 19 6 -3.9070 -5.6509 3.4931 20 6 -5.0042 -5.7263 4.3259 21 6 -4.5145 -5.6543 5.6389 22 6 -3.1709 -5.5324 5.5582 23 8 -2.8085 -5.5336 4.2680 24 6 -1.6693 -5.3823 -2.2033 25 6 -0.9506 -4.1020 -2.6419 26 8 0.3537 -4.0657 -2.0543 27 1 -0.4850 0.8400 0.0004 28 1 1.8400 -4.2348 0.9956 29 1 2.5588 -4.0357 -0.6620 30 1 -0.7174 -2.1425 -0.6588 31 1 -0.5291 -2.8670 0.9984 32 1 -0.5235 -5.1548 1.0195 33 1 0.2492 -6.1882 -0.2116 34 1 -1.8304 -5.5080 1.9012 35 1 -4.8696 -5.7863 1.5551 36 1 -6.0370 -5.8260 4.0263 37 1 -5.1018 -5.6876 6.5447 38 1 -2.4972 -5.4517 6.3986 39 1 -1.1541 -6.2500 -2.6151 40 1 -2.6996 -5.3632 -2.5588 41 1 -0.8608 -4.0893 -3.7280 42 1 -1.5220 -3.2337 -2.3139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053134110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:47 Heat of formation + Delta-G solvation = 12.136340 kcal Electronic energy + Delta-G solvation = -26861.420966 eV Core-core repulsion = 23003.768512 eV Total energy + Delta-G solvation = -3857.652454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.50019 -41.83196 -40.30383 -37.71209 -35.84336 -35.27470 -34.26947 -33.98908 -31.71179 -30.27877 -29.18746 -27.67204 -26.85721 -25.65519 -24.28887 -23.23422 -22.76748 -21.34931 -20.54933 -19.73173 -18.95938 -18.81359 -17.88702 -17.63005 -17.10273 -17.07522 -16.73310 -16.36598 -15.99999 -15.81873 -15.54033 -15.22961 -15.00713 -14.85696 -14.22952 -14.09294 -13.90191 -13.72403 -13.57413 -13.40777 -13.24738 -12.90858 -12.79155 -12.77456 -12.47058 -12.11108 -11.92677 -11.73025 -11.71446 -11.47223 -10.99682 -10.91280 -10.84898 -10.81032 -9.59908 -8.96204 -8.91417 -7.91127 -5.24722 -0.61220 1.14798 1.43704 1.45242 1.55497 1.69564 1.87935 2.04314 2.37399 2.45729 2.63631 3.27446 3.35277 3.47363 3.71418 3.72301 3.83641 3.95636 4.02821 4.08267 4.13960 4.24811 4.31630 4.49198 4.56069 4.62813 4.70605 4.72671 4.78299 4.83528 4.85966 4.93537 4.98884 5.09778 5.14272 5.17062 5.26289 5.38862 5.47061 5.55067 5.89880 6.09258 6.26618 6.32308 6.89148 7.02956 7.59381 8.52193 9.25685 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.004068 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.440113 B = 6881.281701 C = 8550.819040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.228 4.228 8 H 0.087 0.913 9 N -0.636 5.636 10 C 0.137 3.863 11 C 0.070 3.930 12 C 0.149 3.851 13 C 0.100 3.900 14 N -0.609 5.609 15 C 0.555 3.445 16 O -0.585 6.585 17 C -0.235 4.235 18 C 0.030 3.970 19 C -0.048 4.048 20 C -0.153 4.153 21 C -0.230 4.230 22 C -0.012 4.012 23 O -0.185 6.185 24 C 0.086 3.914 25 C 0.048 3.952 26 O -0.362 6.362 27 H 0.246 0.754 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.023 0.977 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.241 0.759 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 -16.378 8.069 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.356 4.356 8 H 0.105 0.895 9 N -0.362 5.362 10 C 0.012 3.988 11 C 0.028 3.972 12 C 0.023 3.977 13 C -0.023 4.023 14 N -0.341 5.341 15 C 0.350 3.650 16 O -0.469 6.469 17 C -0.255 4.255 18 C 0.010 3.990 19 C -0.097 4.097 20 C -0.172 4.172 21 C -0.249 4.249 22 C -0.081 4.081 23 O -0.081 6.081 24 C -0.037 4.037 25 C -0.029 4.029 26 O -0.280 6.280 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.193 0.807 37 H 0.198 0.802 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.841 -16.132 7.497 19.059 hybrid contribution -0.098 1.498 0.191 1.513 sum -6.939 -14.634 7.688 17.928 Atomic orbital electron populations 1.70039 1.06619 1.25345 1.58687 1.25622 0.96476 1.00930 1.03135 0.85005 0.78380 0.79353 0.76591 1.18569 1.22219 1.21900 1.19470 0.90919 0.83177 1.42077 0.89476 1.46145 1.03088 1.00725 1.86250 1.22749 0.94095 0.83603 0.98305 1.23246 0.98196 0.93598 0.82172 1.22570 0.87509 0.91537 0.96059 1.22374 0.83338 0.98372 0.98251 1.48127 1.07525 1.70881 1.07575 1.17182 0.82752 0.76347 0.88761 1.90766 1.31151 1.52317 1.72701 1.22082 1.00704 1.09400 0.93304 1.20768 0.99711 0.90248 0.88297 1.19971 0.85226 1.12808 0.91691 1.22803 0.99890 1.01696 0.92822 1.22200 0.94979 1.08658 0.99013 1.25236 0.97743 1.01297 0.83829 1.84123 1.35227 1.70352 1.18352 1.22284 1.03010 0.98833 0.79529 1.23036 0.83968 0.96043 0.99867 1.87881 1.27851 1.94373 1.17891 0.94523 0.89959 0.91779 0.94918 0.95904 0.87482 0.87449 0.84273 0.81929 0.80655 0.80180 0.74264 0.88309 0.88401 0.85317 0.95408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.80 11.39 21.65 0.25 -59.55 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 7 C -0.23 -13.04 10.70 84.03 0.90 -12.14 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.64 -33.10 3.70 -729.26 -2.70 -35.80 16 10 C 0.14 5.33 8.33 86.30 0.72 6.05 16 11 C 0.07 2.61 1.21 -10.64 -0.01 2.60 16 12 C 0.15 7.28 6.64 86.30 0.57 7.86 16 13 C 0.10 2.83 5.64 86.04 0.49 3.32 16 14 N -0.61 -18.47 3.03 -829.30 -2.52 -20.99 16 15 C 0.56 17.83 7.47 85.06 0.64 18.46 16 16 O -0.59 -21.43 15.61 -4.61 -0.07 -21.50 16 17 C -0.23 -6.57 8.80 22.48 0.20 -6.37 16 18 C 0.03 0.74 9.39 22.50 0.21 0.96 16 19 C -0.05 -1.12 6.84 23.03 0.16 -0.97 16 20 C -0.15 -2.77 10.90 22.71 0.25 -2.52 16 21 C -0.23 -3.41 10.87 22.07 0.24 -3.17 16 22 C -0.01 -0.19 12.06 67.11 0.81 0.62 16 23 O -0.18 -4.28 10.18 -6.11 -0.06 -4.34 16 24 C 0.09 2.40 6.58 86.33 0.57 2.97 16 25 C 0.05 1.56 6.88 72.06 0.50 2.06 16 26 O -0.36 -13.99 10.52 -148.98 -1.57 -15.56 16 27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.03 1.87 6.31 -2.39 -0.02 1.86 16 31 H 0.02 1.15 7.92 -2.39 -0.02 1.13 16 32 H 0.11 2.84 5.20 -2.39 -0.01 2.83 16 33 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.14 3.66 5.49 -2.91 -0.02 3.64 16 35 H 0.16 3.81 7.47 -2.91 -0.02 3.79 16 36 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.24 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.10 2.77 7.09 -2.39 -0.02 2.76 16 41 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.03 1.08 7.19 -2.39 -0.02 1.06 16 Total: -1.00 -78.94 350.77 3.09 -75.85 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.04 Total: 16.97 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.69 Total: 16.13 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.97 Total: -116.34 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.70 Total: -41.40 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -78.94 3.09 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053134110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.985 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds