Wall clock time and date at job start Tue Mar 31 2020 12:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99396 * 2 1 4 4 H 1.48496 * 109.47237 * 274.99607 * 3 2 1 5 5 H 1.48503 * 109.47164 * 35.00115 * 3 2 1 6 6 H 1.48503 * 109.46516 * 154.99588 * 3 2 1 7 7 C 1.38808 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00073 * 185.46625 * 7 2 1 9 9 N 1.36939 * 119.99763 * 5.46421 * 7 2 1 10 10 C 1.47485 * 125.68652 * 185.15729 * 9 7 2 11 11 C 1.55397 * 104.78242 * 155.63346 * 10 9 7 12 12 H 1.09002 * 112.51900 * 157.27086 * 11 10 9 13 13 O 1.42768 * 107.69576 * 281.46828 * 11 10 9 14 14 C 1.42651 * 115.69161 * 166.35473 * 13 11 10 15 15 C 1.53544 * 108.38361 * 295.54482 * 14 13 11 16 16 N 1.46104 * 107.56508 * 55.10861 * 15 14 13 17 17 C 1.34775 * 119.46616 * 130.15314 * 16 15 14 18 18 O 1.21782 * 119.99990 * 355.67420 * 17 16 15 19 19 C 1.41551 * 120.00381 * 175.66425 * 17 16 15 20 20 C 1.35624 * 120.00275 * 195.74080 * 19 17 16 21 21 C 1.41610 * 120.00077 * 24.03236 * 20 19 17 22 22 C 1.37943 * 126.10496 * 187.65788 * 21 20 19 23 23 C 1.40317 * 106.52690 * 179.85067 * 22 21 20 24 24 C 1.35152 * 107.20584 * 0.40745 * 23 22 21 25 25 O 1.34015 * 109.03350 * 359.74110 * 24 23 22 26 26 C 1.45660 * 120.41118 * 311.16855 * 16 15 14 27 27 H 1.08996 * 109.95865 * 164.43707 * 26 16 15 28 28 C 1.47213 * 125.68843 * 5.20020 * 9 7 2 29 29 H 0.96997 * 120.00334 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.37362 * 36.80848 * 10 9 7 31 31 H 1.08997 * 110.37817 * 274.46597 * 10 9 7 32 32 H 1.08996 * 109.68370 * 55.26372 * 14 13 11 33 33 H 1.08997 * 109.67995 * 175.82397 * 14 13 11 34 34 H 1.08996 * 109.88055 * 175.05418 * 15 14 13 35 35 H 1.09005 * 109.87847 * 296.06160 * 15 14 13 36 36 H 1.08005 * 119.99522 * 15.74959 * 19 17 16 37 37 H 1.08001 * 120.00353 * 204.02463 * 20 19 17 38 38 H 1.07995 * 126.73630 * 359.97438 * 22 21 20 39 39 H 1.08001 * 126.39395 * 180.13212 * 23 22 21 40 40 H 1.07999 * 125.48388 * 179.72584 * 24 23 22 41 41 H 1.08993 * 109.96120 * 61.86095 * 28 9 7 42 42 H 1.09000 * 109.96108 * 300.61336 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3920 2.1076 -1.3947 5 1 1.5043 2.6199 0.8031 6 1 3.5965 1.4121 0.5918 7 6 2.0104 -1.2021 -0.0005 8 1 3.0867 -1.2042 0.0886 9 7 1.3304 -2.3853 -0.1140 10 6 1.9251 -3.7317 -0.0216 11 6 0.7528 -4.6540 0.4140 12 1 0.9221 -5.6977 0.1491 13 8 0.5602 -4.4776 1.8176 14 6 -0.6555 -5.0046 2.3461 15 6 -1.8284 -4.2319 1.7257 16 7 -1.6967 -4.3219 0.2734 17 6 -2.7587 -4.6972 -0.4666 18 8 -3.7935 -5.0339 0.0802 19 6 -2.6716 -4.6998 -1.8795 20 6 -3.8006 -4.7615 -2.6284 21 6 -5.0336 -4.3220 -2.0882 22 6 -6.2742 -4.4626 -2.6746 23 6 -7.2009 -3.8896 -1.7904 24 6 -6.5058 -3.4245 -0.7288 25 8 -5.2039 -3.6858 -0.9104 26 6 -0.4232 -4.0306 -0.3709 27 1 -0.4292 -4.4069 -1.3939 28 6 -0.1161 -2.5254 -0.3495 29 1 -0.4850 0.8400 0.0004 30 1 2.7175 -3.7460 0.7269 31 1 2.3127 -4.0428 -0.9916 32 1 -0.7378 -6.0617 2.0936 33 1 -0.6679 -4.8832 3.4292 34 1 -2.7728 -4.6721 2.0455 35 1 -1.7853 -3.1860 2.0296 36 1 -1.7060 -4.6528 -2.3610 37 1 -3.7594 -5.1458 -3.6369 38 1 -6.4902 -4.9249 -3.6264 39 1 -8.2696 -3.8274 -1.9338 40 1 -6.9309 -2.9228 0.1279 41 1 -0.3823 -2.0776 -1.3068 42 1 -0.6723 -2.0436 0.4546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082982320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:54 Heat of formation + Delta-G solvation = 20.611825 kcal Electronic energy + Delta-G solvation = -27742.789390 eV Core-core repulsion = 23885.504460 eV Total energy + Delta-G solvation = -3857.284930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33583 -40.40276 -38.42895 -35.71861 -34.51374 -33.97776 -32.80238 -32.20433 -30.03789 -28.78676 -27.61597 -27.30743 -24.56653 -24.26809 -22.49133 -21.59346 -21.08650 -20.40004 -19.82156 -18.28901 -17.64844 -17.12800 -16.61520 -16.28326 -15.80511 -15.44277 -15.06152 -14.76869 -14.61873 -14.27026 -14.10048 -13.84174 -13.35245 -13.14133 -12.78672 -12.74367 -12.44280 -12.31747 -12.20026 -11.94914 -11.72972 -11.19423 -11.04161 -10.90592 -10.66520 -10.58572 -10.25923 -10.17639 -10.04510 -9.78643 -9.71380 -9.59442 -9.36462 -8.65077 -8.07910 -7.71263 -6.85635 -5.69975 -3.06709 0.49944 2.30475 2.79909 3.20892 3.35188 3.40802 3.45945 3.48175 3.62251 4.10721 4.49262 4.77584 4.85467 5.00039 5.02256 5.03648 5.22382 5.27967 5.38523 5.40230 5.50153 5.54300 5.66621 5.70734 5.76535 5.77098 5.81153 5.96570 6.04639 6.10472 6.15955 6.31905 6.34668 6.50406 6.55618 6.56089 6.86318 7.29433 7.31565 7.53780 7.68484 7.74328 7.87496 8.23159 8.50288 9.18295 9.79665 10.43413 11.39703 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.004361 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.875572 B = 6418.848155 C = 7503.455496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.140 3.860 11 C 0.066 3.934 12 H 0.070 0.930 13 O -0.360 6.360 14 C 0.052 3.948 15 C 0.078 3.922 16 N -0.587 5.587 17 C 0.545 3.455 18 O -0.538 6.538 19 C -0.212 4.212 20 C -0.001 4.001 21 C 0.004 3.996 22 C -0.180 4.180 23 C -0.232 4.232 24 C -0.015 4.015 25 O -0.126 6.126 26 C 0.079 3.921 27 H 0.094 0.906 28 C 0.175 3.825 29 H 0.252 0.748 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.198 0.802 41 H 0.035 0.965 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -11.832 -3.574 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.013 3.987 11 C 0.006 3.994 12 H 0.088 0.912 13 O -0.278 6.278 14 C -0.026 4.026 15 C -0.045 4.045 16 N -0.319 5.319 17 C 0.337 3.663 18 O -0.419 6.419 19 C -0.232 4.232 20 C -0.021 4.021 21 C -0.046 4.046 22 C -0.199 4.199 23 C -0.251 4.251 24 C -0.086 4.086 25 O -0.018 6.018 26 C -0.026 4.026 27 H 0.112 0.888 28 C 0.049 3.951 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.215 0.785 41 H 0.053 0.947 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.177 -11.583 -2.930 15.065 hybrid contribution 0.033 0.811 -0.284 0.860 sum -9.144 -10.772 -3.214 14.490 Atomic orbital electron populations 1.69937 1.04910 1.25025 1.56850 1.24808 0.95650 0.97697 1.02138 0.86098 0.78656 0.83573 0.77425 1.21684 1.21797 1.20572 1.19051 0.90649 0.82210 1.43523 0.90208 1.44348 1.03429 0.99835 1.84748 1.21738 0.93523 0.85767 0.97634 1.23753 0.96576 0.97490 0.81575 0.91216 1.87885 1.37976 1.80184 1.21787 1.22865 0.84945 0.96012 0.98730 1.22131 0.99942 1.02219 0.80183 1.47310 1.11068 1.66334 1.07143 1.17084 0.83194 0.77963 0.88033 1.90802 1.28774 1.48528 1.73764 1.22360 1.00036 1.06418 0.94401 1.20569 0.88343 0.93763 0.99440 1.19813 0.95386 1.03115 0.86316 1.22220 0.91412 1.04610 1.01649 1.21642 1.00663 1.06606 0.96171 1.24295 0.81214 1.02383 1.00716 1.84455 1.26432 1.57265 1.33656 1.22847 0.82547 1.00994 0.96234 0.88828 1.21335 0.85806 0.86812 1.01153 0.93771 0.92611 0.94547 0.93586 0.88249 0.88492 0.90186 0.83896 0.82648 0.83306 0.83603 0.78533 0.94653 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.42 55.49 0.58 -26.47 16 2 C -0.01 -0.18 5.46 -17.43 -0.10 -0.28 16 3 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.23 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -14.93 3.40 -169.98 -0.58 -15.51 16 10 C 0.14 2.80 6.83 -2.23 -0.02 2.79 16 11 C 0.07 1.16 4.09 -24.66 -0.10 1.06 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 13 O -0.36 -6.86 10.14 -35.23 -0.36 -7.22 16 14 C 0.05 0.81 7.03 37.44 0.26 1.08 16 15 C 0.08 1.35 6.37 -3.97 -0.03 1.32 16 16 N -0.59 -10.53 2.70 -168.82 -0.46 -10.99 16 17 C 0.54 9.66 6.74 -15.00 -0.10 9.56 16 18 O -0.54 -10.52 12.42 -19.71 -0.24 -10.76 16 19 C -0.21 -3.11 9.11 -39.25 -0.36 -3.47 16 20 C 0.00 -0.02 9.82 -39.23 -0.39 -0.40 16 21 C 0.00 0.06 6.08 -38.40 -0.23 -0.17 16 22 C -0.18 -2.23 10.90 -38.91 -0.42 -2.65 16 23 C -0.23 -2.78 10.87 -39.90 -0.43 -3.21 16 24 C -0.02 -0.20 12.06 29.63 0.36 0.16 16 25 O -0.13 -2.14 7.13 -20.13 -0.14 -2.28 16 26 C 0.08 1.45 2.93 -67.25 -0.20 1.25 16 27 H 0.09 1.49 5.49 -51.93 -0.29 1.21 16 28 C 0.17 4.16 5.07 -3.32 -0.02 4.14 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.10 1.59 6.94 -51.93 -0.36 1.23 16 35 H 0.08 1.55 7.63 -51.93 -0.40 1.16 16 36 H 0.14 1.81 5.88 -52.48 -0.31 1.50 16 37 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.07 1.97 6.15 -51.93 -0.32 1.65 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -34.49 339.83 -8.46 -42.95 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.43 Total: 3.34 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.92 Total: 4.78 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.46 Total: -52.97 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.75 Total: -20.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.49 -8.46 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082982320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.557 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds