Wall clock time and date at job start Tue Mar 31 2020 12:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99396 * 2 1 4 4 H 1.48496 * 109.47237 * 274.99607 * 3 2 1 5 5 H 1.48503 * 109.47164 * 35.00115 * 3 2 1 6 6 H 1.48503 * 109.46516 * 154.99588 * 3 2 1 7 7 C 1.38808 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00073 * 185.46625 * 7 2 1 9 9 N 1.36939 * 119.99763 * 5.46421 * 7 2 1 10 10 C 1.47485 * 125.68652 * 185.15729 * 9 7 2 11 11 C 1.55397 * 104.78242 * 155.63346 * 10 9 7 12 12 H 1.09002 * 112.51900 * 157.27086 * 11 10 9 13 13 O 1.42768 * 107.69576 * 281.46828 * 11 10 9 14 14 C 1.42651 * 115.69161 * 166.35473 * 13 11 10 15 15 C 1.53544 * 108.38361 * 295.54482 * 14 13 11 16 16 N 1.46104 * 107.56508 * 55.10861 * 15 14 13 17 17 C 1.34775 * 119.46616 * 130.15314 * 16 15 14 18 18 O 1.21782 * 119.99990 * 355.67420 * 17 16 15 19 19 C 1.41551 * 120.00381 * 175.66425 * 17 16 15 20 20 C 1.35624 * 120.00275 * 195.74080 * 19 17 16 21 21 C 1.41610 * 120.00077 * 24.03236 * 20 19 17 22 22 C 1.37943 * 126.10496 * 187.65788 * 21 20 19 23 23 C 1.40317 * 106.52690 * 179.85067 * 22 21 20 24 24 C 1.35152 * 107.20584 * 0.40745 * 23 22 21 25 25 O 1.34015 * 109.03350 * 359.74110 * 24 23 22 26 26 C 1.45660 * 120.41118 * 311.16855 * 16 15 14 27 27 H 1.08996 * 109.95865 * 164.43707 * 26 16 15 28 28 C 1.47213 * 125.68843 * 5.20020 * 9 7 2 29 29 H 0.96997 * 120.00334 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.37362 * 36.80848 * 10 9 7 31 31 H 1.08997 * 110.37817 * 274.46597 * 10 9 7 32 32 H 1.08996 * 109.68370 * 55.26372 * 14 13 11 33 33 H 1.08997 * 109.67995 * 175.82397 * 14 13 11 34 34 H 1.08996 * 109.88055 * 175.05418 * 15 14 13 35 35 H 1.09005 * 109.87847 * 296.06160 * 15 14 13 36 36 H 1.08005 * 119.99522 * 15.74959 * 19 17 16 37 37 H 1.08001 * 120.00353 * 204.02463 * 20 19 17 38 38 H 1.07995 * 126.73630 * 359.97438 * 22 21 20 39 39 H 1.08001 * 126.39395 * 180.13212 * 23 22 21 40 40 H 1.07999 * 125.48388 * 179.72584 * 24 23 22 41 41 H 1.08993 * 109.96120 * 61.86095 * 28 9 7 42 42 H 1.09000 * 109.96108 * 300.61336 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3920 2.1076 -1.3947 5 1 1.5043 2.6199 0.8031 6 1 3.5965 1.4121 0.5918 7 6 2.0104 -1.2021 -0.0005 8 1 3.0867 -1.2042 0.0886 9 7 1.3304 -2.3853 -0.1140 10 6 1.9251 -3.7317 -0.0216 11 6 0.7528 -4.6540 0.4140 12 1 0.9221 -5.6977 0.1491 13 8 0.5602 -4.4776 1.8176 14 6 -0.6555 -5.0046 2.3461 15 6 -1.8284 -4.2319 1.7257 16 7 -1.6967 -4.3219 0.2734 17 6 -2.7587 -4.6972 -0.4666 18 8 -3.7935 -5.0339 0.0802 19 6 -2.6716 -4.6998 -1.8795 20 6 -3.8006 -4.7615 -2.6284 21 6 -5.0336 -4.3220 -2.0882 22 6 -6.2742 -4.4626 -2.6746 23 6 -7.2009 -3.8896 -1.7904 24 6 -6.5058 -3.4245 -0.7288 25 8 -5.2039 -3.6858 -0.9104 26 6 -0.4232 -4.0306 -0.3709 27 1 -0.4292 -4.4069 -1.3939 28 6 -0.1161 -2.5254 -0.3495 29 1 -0.4850 0.8400 0.0004 30 1 2.7175 -3.7460 0.7269 31 1 2.3127 -4.0428 -0.9916 32 1 -0.7378 -6.0617 2.0936 33 1 -0.6679 -4.8832 3.4292 34 1 -2.7728 -4.6721 2.0455 35 1 -1.7853 -3.1860 2.0296 36 1 -1.7060 -4.6528 -2.3610 37 1 -3.7594 -5.1458 -3.6369 38 1 -6.4902 -4.9249 -3.6264 39 1 -8.2696 -3.8274 -1.9338 40 1 -6.9309 -2.9228 0.1279 41 1 -0.3823 -2.0776 -1.3068 42 1 -0.6723 -2.0436 0.4546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082982320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:53 Heat of formation + Delta-G solvation = -1.792626 kcal Electronic energy + Delta-G solvation = -27743.760920 eV Core-core repulsion = 23885.504460 eV Total energy + Delta-G solvation = -3858.256460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.37896 -41.79036 -39.82554 -37.38587 -35.90370 -35.11847 -34.12492 -33.79511 -31.59575 -30.11431 -29.09604 -28.87979 -26.34300 -25.55579 -23.80745 -22.61651 -22.47593 -22.05252 -21.02038 -19.49711 -19.03064 -18.93472 -17.96709 -17.60804 -17.02335 -16.85805 -16.47489 -16.26676 -16.10194 -15.64888 -15.59121 -15.03292 -14.85765 -14.64428 -14.09089 -14.00383 -13.75144 -13.69442 -13.41740 -13.35075 -13.07324 -12.94312 -12.81675 -12.60761 -12.30114 -12.19754 -12.02410 -11.82338 -11.49669 -11.30071 -10.99486 -10.80224 -10.73114 -10.68385 -9.48989 -8.88862 -8.78637 -7.81687 -5.20172 -0.55282 1.26713 1.45984 1.47549 1.56637 1.75559 1.99351 2.29598 2.42980 2.50768 2.76693 3.35691 3.56543 3.61181 3.76413 3.85713 3.93714 3.97496 4.10016 4.11235 4.13742 4.21640 4.31946 4.40095 4.57974 4.66403 4.69512 4.74032 4.87420 4.89788 4.94906 5.01093 5.04763 5.10040 5.31392 5.35175 5.48666 5.52740 5.67249 5.75634 6.18723 6.29494 6.35096 6.43262 7.07962 7.18846 7.76940 8.40002 9.25966 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.004361 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.875572 B = 6418.848155 C = 7503.455496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.619 5.619 10 C 0.133 3.867 11 C 0.075 3.925 12 H 0.116 0.884 13 O -0.389 6.389 14 C 0.059 3.941 15 C 0.080 3.920 16 N -0.594 5.594 17 C 0.541 3.459 18 O -0.564 6.564 19 C -0.253 4.253 20 C 0.026 3.974 21 C -0.044 4.044 22 C -0.161 4.161 23 C -0.231 4.231 24 C -0.035 4.035 25 O -0.167 6.167 26 C 0.093 3.907 27 H 0.125 0.875 28 C 0.190 3.810 29 H 0.243 0.757 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.161 0.839 37 H 0.204 0.796 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.217 0.783 41 H 0.000 1.000 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 -13.928 -5.170 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.346 5.346 10 C 0.008 3.992 11 C 0.016 3.984 12 H 0.134 0.866 13 O -0.308 6.308 14 C -0.018 4.018 15 C -0.043 4.043 16 N -0.325 5.325 17 C 0.336 3.664 18 O -0.446 6.446 19 C -0.273 4.273 20 C 0.006 3.994 21 C -0.093 4.093 22 C -0.180 4.180 23 C -0.250 4.250 24 C -0.105 4.105 25 O -0.061 6.061 26 C -0.012 4.012 27 H 0.142 0.858 28 C 0.063 3.937 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.179 0.821 37 H 0.221 0.779 38 H 0.202 0.798 39 H 0.195 0.805 40 H 0.234 0.766 41 H 0.018 0.982 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.268 -13.721 -4.532 17.167 hybrid contribution -0.107 1.463 0.200 1.480 sum -9.375 -12.259 -4.332 16.029 Atomic orbital electron populations 1.70205 1.06438 1.24899 1.58599 1.25635 0.96418 1.01039 1.02845 0.85083 0.77871 0.79316 0.77238 1.21314 1.22736 1.18967 1.19478 0.91289 0.83546 1.41993 0.89500 1.44636 1.04104 1.01246 1.84595 1.22012 0.94254 0.83883 0.99015 1.23851 0.94534 0.99071 0.80957 0.86622 1.87836 1.39342 1.81077 1.22528 1.22993 0.82692 0.96623 0.99535 1.22057 1.01260 1.00391 0.80630 1.47355 1.11225 1.66688 1.07261 1.17595 0.82404 0.77090 0.89313 1.90771 1.29396 1.49900 1.74548 1.22359 1.01656 1.10471 0.92832 1.21241 0.86947 0.90238 1.00934 1.20488 0.97275 1.04978 0.86595 1.22750 0.90300 1.02558 1.02399 1.22098 1.02160 1.05429 0.95271 1.24984 0.80635 1.02702 1.02210 1.84424 1.28126 1.58368 1.35176 1.22641 0.83287 0.96968 0.98349 0.85779 1.20940 0.85014 0.90449 0.97277 0.94824 0.92986 0.91551 0.91137 0.86334 0.88069 0.93915 0.82139 0.77946 0.79757 0.80526 0.76606 0.98181 0.96016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 10.42 21.65 0.23 -58.75 16 2 C -0.07 -3.85 5.46 84.86 0.46 -3.39 16 3 Si 0.98 46.48 29.56 68.60 2.03 48.51 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.23 -13.12 10.27 84.03 0.86 -12.25 16 8 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 9 N -0.62 -31.50 3.40 -691.71 -2.35 -33.86 16 10 C 0.13 5.16 6.83 87.02 0.59 5.75 16 11 C 0.07 2.50 4.09 31.93 0.13 2.63 16 12 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 13 O -0.39 -14.46 10.14 -148.98 -1.51 -15.97 16 14 C 0.06 1.77 7.03 72.16 0.51 2.28 16 15 C 0.08 2.85 6.37 86.64 0.55 3.41 16 16 N -0.59 -21.63 2.70 -806.20 -2.18 -23.81 16 17 C 0.54 19.36 6.74 85.06 0.57 19.93 16 18 O -0.56 -22.48 12.42 19.12 0.24 -22.24 16 19 C -0.25 -7.21 9.11 22.48 0.20 -7.01 16 20 C 0.03 0.61 9.82 22.50 0.22 0.83 16 21 C -0.04 -1.26 6.08 23.03 0.14 -1.12 16 22 C -0.16 -3.55 10.90 22.71 0.25 -3.30 16 23 C -0.23 -5.02 10.87 22.06 0.24 -4.78 16 24 C -0.04 -0.94 12.06 67.11 0.81 -0.13 16 25 O -0.17 -5.78 7.13 17.60 0.13 -5.66 16 26 C 0.09 3.38 2.93 45.88 0.13 3.51 16 27 H 0.12 3.74 5.49 -2.39 -0.01 3.73 16 28 C 0.19 9.42 5.07 86.46 0.44 9.86 16 29 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.10 3.46 6.94 -2.39 -0.02 3.45 16 35 H 0.04 1.81 7.63 -2.38 -0.02 1.79 16 36 H 0.16 3.81 5.88 -2.91 -0.02 3.79 16 37 H 0.20 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.22 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.00 0.00 7.92 -2.39 -0.02 -0.02 16 42 H 0.02 1.29 6.15 -2.39 -0.01 1.27 16 Total: -1.00 -80.32 339.83 3.73 -76.59 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.04 Total: 18.96 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.12 Total: 16.22 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -4.30 Total: -116.41 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.15 Total: -43.87 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -80.32 3.73 -76.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082982320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.796 kcal (2) G-P(sol) polarization free energy of solvation -80.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds