Wall clock time and date at job start Tue Mar 31 2020 12:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46875 * 125.36829 * 0.02562 * 9 7 2 11 11 C 1.54198 * 106.39721 * 197.84833 * 10 9 7 12 12 H 1.09005 * 109.64174 * 89.92359 * 11 10 9 13 13 O 1.40782 * 110.24234 * 210.72894 * 11 10 9 14 14 C 1.40586 * 118.90836 * 67.41037 * 13 11 10 15 15 C 1.51979 * 111.33889 * 57.14455 * 14 13 11 16 16 N 1.44962 * 111.86905 * 319.35734 * 15 14 13 17 17 C 1.34781 * 117.32735 * 203.73885 * 16 15 14 18 18 O 1.21778 * 120.00292 * 179.97438 * 17 16 15 19 19 C 1.41550 * 119.99565 * 359.97315 * 17 16 15 20 20 C 1.35633 * 119.99761 * 179.97438 * 19 17 16 21 21 C 1.41604 * 119.99918 * 180.02562 * 20 19 17 22 22 C 1.37949 * 126.10393 * 179.72346 * 21 20 19 23 23 C 1.40317 * 106.52796 * 179.85131 * 22 21 20 24 24 C 1.35147 * 107.20621 * 0.40756 * 23 22 21 25 25 O 1.34019 * 109.03468 * 359.74381 * 24 23 22 26 26 C 1.44534 * 125.34942 * 23.70956 * 16 15 14 27 27 H 1.09007 * 109.34227 * 106.70249 * 26 16 15 28 28 C 1.46795 * 125.36642 * 179.71737 * 9 7 2 29 29 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 30 30 H 1.08994 * 110.07475 * 317.08362 * 10 9 7 31 31 H 1.09006 * 110.07151 * 78.56753 * 10 9 7 32 32 H 1.08994 * 109.11796 * 296.70782 * 14 13 11 33 33 H 1.08993 * 109.21689 * 177.64939 * 14 13 11 34 34 H 1.09002 * 109.00258 * 198.74127 * 15 14 13 35 35 H 1.09001 * 109.00131 * 79.97111 * 15 14 13 36 36 H 1.07994 * 120.00473 * 0.02562 * 19 17 16 37 37 H 1.07998 * 120.00096 * 0.02562 * 20 19 17 38 38 H 1.08002 * 126.73299 * 359.97438 * 22 21 20 39 39 H 1.08006 * 126.39458 * 180.12131 * 23 22 21 40 40 H 1.07997 * 125.48433 * 179.72406 * 24 23 22 41 41 H 1.09000 * 109.82395 * 298.36060 * 28 9 7 42 42 H 1.08996 * 109.82543 * 59.31803 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 -0.1368 -2.5253 0.0108 11 6 -0.4388 -3.9657 0.4711 12 1 -0.5395 -3.9901 1.5562 13 8 -1.6273 -4.4284 -0.1250 14 6 -1.6517 -4.6441 -1.5141 15 6 -0.5751 -5.6287 -1.9398 16 7 0.6706 -5.4057 -1.2328 17 6 1.8027 -5.8389 -1.8222 18 8 2.8766 -5.6765 -1.2715 19 6 1.7432 -6.4826 -3.0815 20 6 2.8825 -6.9181 -3.6749 21 6 2.8231 -7.5616 -4.9349 22 6 3.8975 -8.0470 -5.6512 23 6 3.3742 -8.6019 -6.8289 24 6 2.0343 -8.4296 -6.7910 25 8 1.7060 -7.8043 -5.6520 26 6 0.7982 -4.7565 0.0522 27 1 1.0235 -5.5035 0.8133 28 6 1.9373 -3.7223 0.0119 29 1 -0.4850 0.8400 -0.0041 30 1 -0.5799 -1.8105 0.7040 31 1 -0.5275 -2.3632 -0.9939 32 1 -1.4890 -3.6954 -2.0255 33 1 -2.6272 -5.0380 -1.7989 34 1 -0.3997 -5.5218 -3.0103 35 1 -0.9213 -6.6423 -1.7379 36 1 0.7909 -6.6263 -3.5702 37 1 3.8349 -6.7740 -3.1865 38 1 4.9372 -8.0092 -5.3613 39 1 3.9375 -9.0740 -7.6203 40 1 1.3398 -8.7447 -7.5557 41 1 2.5306 -3.8574 -0.8925 42 1 2.5704 -3.8383 0.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082982321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:59 Heat of formation + Delta-G solvation = 17.427210 kcal Electronic energy + Delta-G solvation = -27036.927099 eV Core-core repulsion = 23179.504074 eV Total energy + Delta-G solvation = -3857.423025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80152 -40.87303 -38.57831 -35.98478 -34.84861 -34.29875 -33.31004 -32.33403 -30.01321 -29.40090 -27.90685 -27.26307 -24.92122 -23.96737 -23.22904 -22.14779 -21.21594 -20.25200 -19.45469 -18.32021 -17.89085 -17.40732 -16.86951 -16.53545 -16.33792 -15.60628 -15.35050 -15.09515 -14.66940 -14.52149 -14.30757 -13.89806 -13.44339 -13.27863 -13.06753 -13.03917 -12.62571 -12.53303 -12.29046 -12.01888 -12.00969 -11.26706 -11.08124 -10.87922 -10.76010 -10.67927 -10.41792 -10.35964 -10.17470 -10.08983 -9.72343 -9.43565 -8.96644 -8.58274 -8.29931 -8.09635 -6.77641 -5.65001 -3.03167 0.29182 1.89425 2.49429 2.68422 3.13481 3.43521 3.47143 3.48903 3.52114 4.10129 4.41546 4.52485 4.63779 4.66218 4.85833 4.91953 5.00552 5.17411 5.22921 5.36416 5.41943 5.44916 5.48526 5.58946 5.69717 5.74247 5.78038 5.84538 5.88404 5.96712 6.06124 6.15055 6.20800 6.28031 6.59893 6.78677 6.86753 7.17659 7.39280 7.49795 7.63869 7.76841 7.92690 8.31224 8.39233 9.24954 9.85426 10.48318 11.41794 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003501 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.805551 B = 7995.128100 C = 8922.675527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.140 3.860 11 C 0.070 3.930 12 H 0.115 0.885 13 O -0.371 6.371 14 C 0.060 3.940 15 C 0.075 3.925 16 N -0.583 5.583 17 C 0.539 3.461 18 O -0.531 6.531 19 C -0.198 4.198 20 C 0.000 4.000 21 C -0.002 4.002 22 C -0.168 4.168 23 C -0.218 4.218 24 C -0.024 4.024 25 O -0.166 6.166 26 C 0.111 3.889 27 H 0.071 0.929 28 C 0.127 3.873 29 H 0.252 0.748 30 H 0.099 0.901 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.206 0.794 41 H 0.057 0.943 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -18.524 -11.455 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.015 3.985 11 C 0.011 3.989 12 H 0.132 0.868 13 O -0.288 6.288 14 C -0.017 4.017 15 C -0.049 4.049 16 N -0.316 5.316 17 C 0.331 3.669 18 O -0.411 6.411 19 C -0.219 4.219 20 C -0.019 4.019 21 C -0.051 4.051 22 C -0.188 4.188 23 C -0.237 4.237 24 C -0.093 4.093 25 O -0.061 6.061 26 C 0.007 3.993 27 H 0.089 0.911 28 C 0.001 3.999 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.222 0.778 41 H 0.075 0.925 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.345 -18.133 -10.901 21.160 hybrid contribution 0.734 0.782 -0.569 1.214 sum 0.389 -17.351 -11.469 20.803 Atomic orbital electron populations 1.69851 1.04847 1.24976 1.57653 1.24791 0.95752 0.97692 1.02422 0.86144 0.78388 0.82995 0.77936 1.21258 1.21598 1.21093 1.19039 0.90546 0.82237 1.43087 0.90379 1.44274 1.01320 1.00249 1.87286 1.22053 0.85358 0.90765 1.00355 1.23072 0.81982 0.96021 0.97855 0.86785 1.86628 1.35167 1.86082 1.20921 1.22111 0.98042 0.98130 0.83460 1.21750 0.85717 1.00256 0.97186 1.46625 1.06581 1.57796 1.20637 1.17007 0.84097 0.79771 0.86011 1.90821 1.28392 1.56066 1.65771 1.22316 0.99803 1.02812 0.96970 1.20684 1.00353 0.92030 0.88864 1.19932 0.84011 1.06075 0.95107 1.22372 0.99649 1.01659 0.95071 1.21787 0.94577 1.06836 1.00545 1.24298 0.97020 0.99309 0.88703 1.84107 1.34500 1.59681 1.27855 1.21599 0.98696 0.95264 0.83762 0.91094 1.21748 0.93328 0.84069 1.00752 0.93700 0.88319 0.96114 0.92378 0.87852 0.89877 0.91622 0.84965 0.82138 0.82595 0.82988 0.77777 0.92496 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.39 10.18 55.49 0.56 -26.83 16 2 C -0.01 -0.32 5.48 -17.43 -0.10 -0.42 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.39 10.25 -15.06 -0.15 -6.54 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -16.14 3.39 -171.41 -0.58 -16.72 16 10 C 0.14 3.48 5.26 -3.21 -0.02 3.47 16 11 C 0.07 1.39 3.94 -26.27 -0.10 1.29 16 12 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 13 O -0.37 -6.68 10.18 -33.49 -0.34 -7.02 16 14 C 0.06 0.88 6.74 36.64 0.25 1.13 16 15 C 0.07 1.01 5.74 -5.39 -0.03 0.98 16 16 N -0.58 -10.01 3.09 -172.42 -0.53 -10.54 16 17 C 0.54 9.26 6.74 -15.00 -0.10 9.16 16 18 O -0.53 -10.63 13.30 5.12 0.07 -10.56 16 19 C -0.20 -2.68 8.54 -39.25 -0.34 -3.02 16 20 C 0.00 0.01 9.39 -39.23 -0.37 -0.36 16 21 C 0.00 -0.02 6.84 -38.40 -0.26 -0.29 16 22 C -0.17 -1.59 10.90 -38.91 -0.42 -2.01 16 23 C -0.22 -1.72 10.87 -39.90 -0.43 -2.16 16 24 C -0.02 -0.19 12.06 29.63 0.36 0.17 16 25 O -0.17 -1.76 10.18 4.68 0.05 -1.71 16 26 C 0.11 2.16 3.32 -68.67 -0.23 1.93 16 27 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 28 C 0.13 2.95 6.02 -3.41 -0.02 2.93 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.10 2.75 6.24 -51.93 -0.32 2.42 16 31 H 0.02 0.56 6.48 -51.93 -0.34 0.22 16 32 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.97 6.09 -51.93 -0.32 0.65 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.13 1.53 5.67 -52.49 -0.30 1.23 16 37 H 0.16 1.94 7.46 -52.49 -0.39 1.55 16 38 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.06 1.42 5.31 -51.93 -0.28 1.14 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -34.39 338.29 -7.89 -42.28 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.22 Total: 2.16 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.97 Total: 6.26 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.55 Total: -54.09 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.23 Total: -19.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.39 -7.89 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082982321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.708 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds