Wall clock time and date at job start Tue Mar 31 2020 12:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46875 * 125.36829 * 0.02562 * 9 7 2 11 11 C 1.54198 * 106.39721 * 197.84833 * 10 9 7 12 12 H 1.09005 * 109.64174 * 89.92359 * 11 10 9 13 13 O 1.40782 * 110.24234 * 210.72894 * 11 10 9 14 14 C 1.40586 * 118.90836 * 67.41037 * 13 11 10 15 15 C 1.51979 * 111.33889 * 57.14455 * 14 13 11 16 16 N 1.44962 * 111.86905 * 319.35734 * 15 14 13 17 17 C 1.34781 * 117.32735 * 203.73885 * 16 15 14 18 18 O 1.21778 * 120.00292 * 179.97438 * 17 16 15 19 19 C 1.41550 * 119.99565 * 359.97315 * 17 16 15 20 20 C 1.35633 * 119.99761 * 179.97438 * 19 17 16 21 21 C 1.41604 * 119.99918 * 180.02562 * 20 19 17 22 22 C 1.37949 * 126.10393 * 179.72346 * 21 20 19 23 23 C 1.40317 * 106.52796 * 179.85131 * 22 21 20 24 24 C 1.35147 * 107.20621 * 0.40756 * 23 22 21 25 25 O 1.34019 * 109.03468 * 359.74381 * 24 23 22 26 26 C 1.44534 * 125.34942 * 23.70956 * 16 15 14 27 27 H 1.09007 * 109.34227 * 106.70249 * 26 16 15 28 28 C 1.46795 * 125.36642 * 179.71737 * 9 7 2 29 29 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 30 30 H 1.08994 * 110.07475 * 317.08362 * 10 9 7 31 31 H 1.09006 * 110.07151 * 78.56753 * 10 9 7 32 32 H 1.08994 * 109.11796 * 296.70782 * 14 13 11 33 33 H 1.08993 * 109.21689 * 177.64939 * 14 13 11 34 34 H 1.09002 * 109.00258 * 198.74127 * 15 14 13 35 35 H 1.09001 * 109.00131 * 79.97111 * 15 14 13 36 36 H 1.07994 * 120.00473 * 0.02562 * 19 17 16 37 37 H 1.07998 * 120.00096 * 0.02562 * 20 19 17 38 38 H 1.08002 * 126.73299 * 359.97438 * 22 21 20 39 39 H 1.08006 * 126.39458 * 180.12131 * 23 22 21 40 40 H 1.07997 * 125.48433 * 179.72406 * 24 23 22 41 41 H 1.09000 * 109.82395 * 298.36060 * 28 9 7 42 42 H 1.08996 * 109.82543 * 59.31803 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 -0.1368 -2.5253 0.0108 11 6 -0.4388 -3.9657 0.4711 12 1 -0.5395 -3.9901 1.5562 13 8 -1.6273 -4.4284 -0.1250 14 6 -1.6517 -4.6441 -1.5141 15 6 -0.5751 -5.6287 -1.9398 16 7 0.6706 -5.4057 -1.2328 17 6 1.8027 -5.8389 -1.8222 18 8 2.8766 -5.6765 -1.2715 19 6 1.7432 -6.4826 -3.0815 20 6 2.8825 -6.9181 -3.6749 21 6 2.8231 -7.5616 -4.9349 22 6 3.8975 -8.0470 -5.6512 23 6 3.3742 -8.6019 -6.8289 24 6 2.0343 -8.4296 -6.7910 25 8 1.7060 -7.8043 -5.6520 26 6 0.7982 -4.7565 0.0522 27 1 1.0235 -5.5035 0.8133 28 6 1.9373 -3.7223 0.0119 29 1 -0.4850 0.8400 -0.0041 30 1 -0.5799 -1.8105 0.7040 31 1 -0.5275 -2.3632 -0.9939 32 1 -1.4890 -3.6954 -2.0255 33 1 -2.6272 -5.0380 -1.7989 34 1 -0.3997 -5.5218 -3.0103 35 1 -0.9213 -6.6423 -1.7379 36 1 0.7909 -6.6263 -3.5702 37 1 3.8349 -6.7740 -3.1865 38 1 4.9372 -8.0092 -5.3613 39 1 3.9375 -9.0740 -7.6203 40 1 1.3398 -8.7447 -7.5557 41 1 2.5306 -3.8574 -0.8925 42 1 2.5704 -3.8383 0.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082982321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:58 Heat of formation + Delta-G solvation = -6.166597 kcal Electronic energy + Delta-G solvation = -27037.950204 eV Core-core repulsion = 23179.504074 eV Total energy + Delta-G solvation = -3858.446129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.50336 -42.26955 -39.98828 -37.73966 -36.20414 -35.35747 -34.28911 -33.95145 -31.74297 -30.37123 -29.57150 -28.77111 -26.70373 -25.21235 -24.62573 -22.86977 -22.61166 -21.63560 -20.70372 -19.63685 -19.21051 -18.77438 -18.23536 -17.97008 -17.07874 -16.96180 -16.82907 -16.50623 -16.28274 -15.70531 -15.61280 -15.46759 -15.08162 -14.59903 -14.12303 -13.99437 -13.92165 -13.80310 -13.67045 -13.41153 -13.21250 -13.07100 -12.80614 -12.65243 -12.31787 -12.19194 -12.11745 -11.90192 -11.70513 -11.69019 -10.93950 -10.84115 -10.77420 -10.46122 -9.61742 -8.98460 -8.89939 -7.85027 -5.27405 -0.61962 1.14765 1.42876 1.46865 1.53473 1.69516 1.84664 2.02031 2.37746 2.45596 2.73669 3.26766 3.36800 3.59722 3.71264 3.76406 3.90143 3.93690 4.02210 4.06662 4.10930 4.19608 4.28112 4.37074 4.41490 4.48040 4.66537 4.71660 4.83859 4.86847 4.96744 5.02305 5.04124 5.09261 5.18820 5.36384 5.46265 5.53753 5.60603 5.66225 6.07736 6.18729 6.23375 6.44001 7.03869 7.10168 7.71049 8.32832 9.19237 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003501 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.805551 B = 7995.128100 C = 8922.675527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.983 3.017 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.151 3.849 11 C 0.087 3.913 12 H 0.126 0.874 13 O -0.372 6.372 14 C 0.052 3.948 15 C 0.072 3.928 16 N -0.592 5.592 17 C 0.537 3.463 18 O -0.574 6.574 19 C -0.227 4.227 20 C 0.027 3.973 21 C -0.044 4.044 22 C -0.156 4.156 23 C -0.232 4.232 24 C -0.007 4.007 25 O -0.180 6.180 26 C 0.122 3.878 27 H 0.086 0.914 28 C 0.128 3.872 29 H 0.250 0.750 30 H 0.065 0.935 31 H -0.007 1.007 32 H 0.030 0.970 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.246 0.754 41 H 0.040 0.960 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -20.601 -13.635 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.811 3.189 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.350 5.350 10 C 0.025 3.975 11 C 0.028 3.972 12 H 0.144 0.856 13 O -0.289 6.289 14 C -0.024 4.024 15 C -0.050 4.050 16 N -0.324 5.324 17 C 0.331 3.669 18 O -0.457 6.457 19 C -0.247 4.247 20 C 0.008 3.992 21 C -0.093 4.093 22 C -0.175 4.175 23 C -0.251 4.251 24 C -0.076 4.076 25 O -0.076 6.076 26 C 0.017 3.983 27 H 0.104 0.896 28 C 0.003 3.997 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.011 0.989 32 H 0.048 0.952 33 H 0.167 0.833 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.188 0.812 39 H 0.197 0.803 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.679 -20.242 -13.093 24.117 hybrid contribution 0.902 1.308 -0.134 1.595 sum 0.224 -18.934 -13.227 23.098 Atomic orbital electron populations 1.70097 1.06124 1.25426 1.57943 1.25654 0.96731 1.00938 1.02068 0.85091 0.77175 0.78470 0.78200 1.20644 1.21355 1.20099 1.19362 0.90850 0.83701 1.43720 0.90723 1.44538 1.02300 1.00982 1.87135 1.21793 0.84223 0.93514 0.97958 1.22743 0.83103 0.92764 0.98594 0.85635 1.86634 1.33861 1.85589 1.22845 1.22460 1.01007 0.97559 0.81392 1.22020 0.83666 1.01409 0.97931 1.46751 1.08144 1.57495 1.20054 1.17548 0.83381 0.79158 0.86831 1.90786 1.29745 1.58178 1.67017 1.22109 1.01194 1.05396 0.96046 1.20730 0.99772 0.89730 0.89011 1.19818 0.84974 1.08914 0.95586 1.22796 1.00092 0.99540 0.95116 1.22194 0.95027 1.07141 1.00705 1.25258 0.98008 0.96431 0.87861 1.84100 1.34509 1.60214 1.28765 1.21315 0.96601 0.94533 0.85824 0.89603 1.21762 0.94594 0.83864 0.99469 0.94097 0.91717 0.98886 0.95195 0.83286 0.87896 0.88287 0.82948 0.82777 0.81231 0.80341 0.73769 0.94194 0.95662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 10.18 21.65 0.22 -57.82 16 2 C -0.06 -3.60 5.48 84.86 0.47 -3.14 16 3 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.25 -14.89 10.25 84.04 0.86 -14.03 16 8 H 0.07 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -34.78 3.39 -696.22 -2.36 -37.14 16 10 C 0.15 7.84 5.26 86.71 0.46 8.29 16 11 C 0.09 3.53 3.94 30.89 0.12 3.65 16 12 H 0.13 4.74 8.14 -2.38 -0.02 4.72 16 13 O -0.37 -13.08 10.18 -142.76 -1.45 -14.54 16 14 C 0.05 1.47 6.74 71.65 0.48 1.95 16 15 C 0.07 1.80 5.74 86.33 0.50 2.29 16 16 N -0.59 -20.15 3.09 -817.59 -2.52 -22.67 16 17 C 0.54 18.64 6.74 85.06 0.57 19.21 16 18 O -0.57 -23.91 13.30 -4.60 -0.06 -23.97 16 19 C -0.23 -6.03 8.54 22.48 0.19 -5.83 16 20 C 0.03 0.67 9.39 22.50 0.21 0.88 16 21 C -0.04 -0.92 6.84 23.03 0.16 -0.76 16 22 C -0.16 -2.58 10.90 22.71 0.25 -2.34 16 23 C -0.23 -2.83 10.87 22.06 0.24 -2.59 16 24 C -0.01 -0.08 12.06 67.11 0.81 0.73 16 25 O -0.18 -3.36 10.18 -6.16 -0.06 -3.42 16 26 C 0.12 4.83 3.32 45.56 0.15 4.98 16 27 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 28 C 0.13 6.24 6.02 86.63 0.52 6.76 16 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.06 3.79 6.24 -2.39 -0.01 3.78 16 31 H -0.01 -0.38 6.48 -2.38 -0.02 -0.40 16 32 H 0.03 1.01 6.74 -2.39 -0.02 0.99 16 33 H 0.15 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.10 2.18 6.09 -2.39 -0.01 2.17 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.15 3.27 5.67 -2.91 -0.02 3.25 16 37 H 0.15 3.82 7.46 -2.91 -0.02 3.80 16 38 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.25 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.04 2.10 5.31 -2.39 -0.01 2.09 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.83 338.29 2.82 -76.01 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.05 Total: 14.08 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 5.99 Total: 20.05 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.66 Total: -117.63 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.58 Total: -41.93 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -78.83 2.82 -76.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082982321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.839 kcal (2) G-P(sol) polarization free energy of solvation -78.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds