Wall clock time and date at job start Tue Mar 31 2020 12:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21341 * 120.00099 * 0.02562 * 17 16 15 19 19 C 1.49447 * 119.99601 * 179.97438 * 17 16 15 20 20 O 1.21352 * 120.00396 * 359.97438 * 19 17 16 21 21 N 1.34778 * 120.00023 * 179.97438 * 19 17 16 22 22 C 1.46498 * 120.00257 * 180.02562 * 21 19 17 23 23 C 1.53004 * 109.47037 * 179.97438 * 22 21 19 24 24 C 1.52999 * 117.49808 * 243.62315 * 23 22 21 25 25 C 1.53000 * 117.50137 * 175.00029 * 23 22 21 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 0.97004 * 119.99684 * 359.97438 * 21 19 17 35 35 H 1.08993 * 109.47053 * 299.99690 * 22 21 19 36 36 H 1.08999 * 109.47323 * 59.99979 * 22 21 19 37 37 H 1.08998 * 115.55027 * 29.33009 * 23 22 21 38 38 H 1.08995 * 117.50100 * 359.97438 * 24 23 22 39 39 H 1.09007 * 117.49898 * 145.02325 * 24 23 22 40 40 H 1.08992 * 117.50246 * 214.98480 * 25 23 22 41 41 H 1.09004 * 117.49252 * 0.02562 * 25 23 22 42 42 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3106 -9.5957 -0.0090 19 6 0.4317 -9.5621 -2.3550 20 8 0.7859 -8.9517 -3.3422 21 7 -0.1732 -10.7596 -2.4842 22 6 -0.4025 -11.3245 -3.8162 23 6 -1.0990 -12.6803 -3.6822 24 6 -0.3411 -13.9154 -4.1729 25 6 -1.5328 -13.3821 -4.9706 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 -0.4561 -11.2476 -1.6950 35 1 -1.0318 -10.6480 -4.3944 36 1 0.5527 -11.4559 -4.3246 37 1 -1.7375 -12.7962 -2.8065 38 1 0.6535 -13.7622 -4.5917 39 1 -0.4809 -14.8444 -3.6199 40 1 -2.4565 -13.9600 -4.9425 41 1 -1.3216 -12.8782 -5.9138 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116751599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:24 Heat of formation + Delta-G solvation = -48.465133 kcal Electronic energy + Delta-G solvation = -24674.858492 eV Core-core repulsion = 20814.578160 eV Total energy + Delta-G solvation = -3860.280331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73519 -39.27825 -38.71623 -37.82915 -36.86563 -35.09349 -34.15827 -32.34463 -30.91423 -29.21011 -28.23540 -26.35492 -25.26736 -23.42951 -22.85116 -21.73922 -21.48073 -20.87852 -20.34826 -18.79033 -17.64694 -17.17097 -16.95422 -16.40986 -16.12045 -15.51242 -15.25109 -15.07283 -14.76963 -14.54555 -14.37728 -14.30640 -13.82373 -13.63130 -13.56399 -13.25273 -12.72481 -12.46906 -12.21528 -12.01226 -11.93518 -11.81947 -11.69436 -11.38240 -10.98175 -10.93135 -10.86095 -10.73714 -10.70834 -10.50320 -9.74701 -9.48377 -9.42990 -9.21166 -8.89494 -8.27949 -7.34832 -6.49584 -4.09172 1.33064 1.76780 2.23549 2.39381 3.10623 3.11303 3.12235 3.14605 3.25839 3.62683 3.92255 4.13086 4.34366 4.40923 4.49603 4.54889 4.73056 4.86646 5.05036 5.13379 5.18639 5.20392 5.28389 5.41211 5.48678 5.62943 5.63989 5.66676 5.75563 5.84104 5.96132 6.04720 6.19144 6.23422 6.51959 6.78926 6.81846 6.97337 7.14135 7.24172 7.29178 7.34266 7.63341 7.68592 7.91329 7.94219 8.95477 9.63636 10.67984 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.002040 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.967063 B =13721.373653 C =14306.544293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.150 3.850 11 C -0.223 4.223 12 C -0.076 4.076 13 C -0.193 4.193 14 C -0.077 4.077 15 C 0.166 3.834 16 N -0.686 5.686 17 C 0.505 3.495 18 O -0.528 6.528 19 C 0.507 3.493 20 O -0.516 6.516 21 N -0.701 5.701 22 C 0.148 3.852 23 C -0.173 4.173 24 C -0.176 4.176 25 C -0.169 4.169 26 C -0.169 4.169 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.416 0.584 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -22.550 -5.508 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.096 3.904 11 C -0.243 4.243 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.078 4.078 15 C 0.044 3.956 16 N -0.339 5.339 17 C 0.285 3.715 18 O -0.405 6.405 19 C 0.288 3.712 20 O -0.391 6.391 21 N -0.355 5.355 22 C 0.025 3.975 23 C -0.192 4.192 24 C -0.213 4.213 25 C -0.206 4.206 26 C -0.189 4.189 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.250 0.750 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.287 -22.300 -5.536 22.979 hybrid contribution 0.520 0.876 0.016 1.018 sum 0.807 -21.424 -5.519 22.139 Atomic orbital electron populations 1.70030 1.05974 1.27899 1.45581 1.25304 0.95861 0.98879 0.96427 0.85770 0.78709 0.79687 0.79208 1.19472 1.20240 1.19460 1.21279 0.91780 0.80752 1.53186 0.89059 1.83981 1.34261 1.11393 1.78190 1.19314 0.90277 0.88078 0.92734 1.21260 0.93833 0.99161 1.10000 1.20746 0.98631 0.92224 0.97815 1.20477 0.93257 0.97206 1.10339 1.19194 0.93548 0.92565 1.02476 1.20318 1.00639 0.91800 0.82844 1.45991 1.57696 1.19024 1.11150 1.20007 0.79691 0.82608 0.89199 1.90750 1.50392 1.60224 1.39126 1.20237 0.79035 0.82076 0.89867 1.90795 1.49294 1.59706 1.39324 1.45716 1.59664 1.19876 1.10259 1.21010 1.00348 0.92426 0.83686 1.22458 1.04089 0.92657 0.99984 1.23116 0.96992 0.97483 1.03738 1.22971 0.99315 1.03271 0.95076 1.20083 0.99465 0.89853 1.09492 0.91879 0.85395 0.87185 0.87415 0.90245 0.90146 0.74703 0.75011 0.90382 0.90716 0.86854 0.88392 0.88467 0.88285 0.88283 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 13.67 55.48 0.76 -24.18 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 9 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 10 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 11 C -0.22 -4.65 9.17 -39.39 -0.36 -5.01 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.19 -3.14 9.70 -39.54 -0.38 -3.52 16 14 C -0.08 -1.29 5.25 -104.65 -0.55 -1.84 16 15 C 0.17 2.35 5.80 -5.19 -0.03 2.32 16 16 N -0.69 -9.40 5.54 -61.91 -0.34 -9.75 16 17 C 0.50 6.83 7.89 -11.59 -0.09 6.74 16 18 O -0.53 -7.87 16.48 5.50 0.09 -7.78 16 19 C 0.51 6.36 7.89 -11.59 -0.09 6.27 16 20 O -0.52 -7.72 16.48 5.50 0.09 -7.63 16 21 N -0.70 -6.62 5.55 -60.73 -0.34 -6.95 16 22 C 0.15 1.16 5.96 -4.04 -0.02 1.14 16 23 C -0.17 -1.00 5.85 -90.62 -0.53 -1.53 16 24 C -0.18 -0.90 10.18 -26.73 -0.27 -1.17 16 25 C -0.17 -0.84 10.25 -26.73 -0.27 -1.11 16 26 C -0.17 -3.41 9.65 -39.40 -0.38 -3.79 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.08 1.14 8.08 -51.93 -0.42 0.73 16 33 H 0.42 5.74 7.94 -40.82 -0.32 5.42 16 34 H 0.41 3.36 7.87 -40.82 -0.32 3.04 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 37 H 0.11 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 39 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -31.73 369.40 -8.04 -39.76 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.39 Total: 10.15 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -3.45 Total: -9.50 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.08 Total: -40.87 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.18 Total: -20.29 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.73 -8.04 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116751599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.701 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds