Wall clock time and date at job start Tue Mar 31 2020 12:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21341 * 120.00099 * 0.02562 * 17 16 15 19 19 C 1.49447 * 119.99601 * 179.97438 * 17 16 15 20 20 O 1.21352 * 120.00396 * 359.97438 * 19 17 16 21 21 N 1.34778 * 120.00023 * 179.97438 * 19 17 16 22 22 C 1.46498 * 120.00257 * 180.02562 * 21 19 17 23 23 C 1.53004 * 109.47037 * 179.97438 * 22 21 19 24 24 C 1.52999 * 117.49808 * 243.62315 * 23 22 21 25 25 C 1.53000 * 117.50137 * 175.00029 * 23 22 21 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 0.97004 * 119.99684 * 359.97438 * 21 19 17 35 35 H 1.08993 * 109.47053 * 299.99690 * 22 21 19 36 36 H 1.08999 * 109.47323 * 59.99979 * 22 21 19 37 37 H 1.08998 * 115.55027 * 29.33009 * 23 22 21 38 38 H 1.08995 * 117.50100 * 359.97438 * 24 23 22 39 39 H 1.09007 * 117.49898 * 145.02325 * 24 23 22 40 40 H 1.08992 * 117.50246 * 214.98480 * 25 23 22 41 41 H 1.09004 * 117.49252 * 0.02562 * 25 23 22 42 42 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3106 -9.5957 -0.0090 19 6 0.4317 -9.5621 -2.3550 20 8 0.7859 -8.9517 -3.3422 21 7 -0.1732 -10.7596 -2.4842 22 6 -0.4025 -11.3245 -3.8162 23 6 -1.0990 -12.6803 -3.6822 24 6 -0.3411 -13.9154 -4.1729 25 6 -1.5328 -13.3821 -4.9706 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 -0.4561 -11.2476 -1.6950 35 1 -1.0318 -10.6480 -4.3944 36 1 0.5527 -11.4559 -4.3246 37 1 -1.7375 -12.7962 -2.8065 38 1 0.6535 -13.7622 -4.5917 39 1 -0.4809 -14.8444 -3.6199 40 1 -2.4565 -13.9600 -4.9425 41 1 -1.3216 -12.8782 -5.9138 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116751599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:23 Heat of formation + Delta-G solvation = -70.748020 kcal Electronic energy + Delta-G solvation = -24675.824750 eV Core-core repulsion = 20814.578160 eV Total energy + Delta-G solvation = -3861.246590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78384 -40.84008 -39.79577 -38.48852 -38.44411 -36.20516 -35.12835 -34.28776 -32.32095 -30.81499 -29.08556 -27.71015 -27.04508 -24.49755 -23.27749 -23.23229 -22.43570 -22.08570 -21.34243 -19.94680 -19.30297 -18.69343 -18.07477 -17.26809 -17.06623 -16.79769 -16.54700 -16.44482 -16.10630 -15.75578 -15.58543 -15.47728 -15.00178 -14.91992 -14.67424 -14.36393 -14.13312 -13.96788 -13.68200 -13.35610 -13.05497 -12.88356 -12.52488 -12.44003 -12.41032 -12.36625 -12.28630 -12.14942 -11.42772 -11.22916 -11.21105 -10.84001 -10.76963 -10.37193 -10.25608 -9.78055 -9.04555 -8.47143 -6.15809 0.28409 0.32037 0.69525 1.34184 1.35496 1.46568 1.51607 2.08298 2.17517 2.54214 2.83209 2.91631 3.15483 3.36852 3.41529 3.63618 3.78318 3.97203 4.06970 4.07797 4.22656 4.28849 4.38319 4.50596 4.58259 4.59938 4.65915 4.71888 4.81986 4.99531 5.02417 5.05185 5.05695 5.11417 5.24377 5.26824 5.28534 5.60209 5.68283 5.70174 5.85977 6.01046 6.15513 6.28394 6.65230 6.87588 6.97363 7.77382 8.75657 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.002040 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.967063 B =13721.373653 C =14306.544293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.110 3.890 11 C -0.233 4.233 12 C -0.071 4.071 13 C -0.167 4.167 14 C -0.064 4.064 15 C 0.171 3.829 16 N -0.686 5.686 17 C 0.509 3.491 18 O -0.540 6.540 19 C 0.508 3.492 20 O -0.545 6.545 21 N -0.684 5.684 22 C 0.147 3.853 23 C -0.178 4.178 24 C -0.175 4.175 25 C -0.166 4.166 26 C -0.181 4.181 27 H 0.272 0.728 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.421 0.579 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -25.105 -5.421 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.060 3.940 11 C -0.252 4.252 12 C -0.089 4.089 13 C -0.186 4.186 14 C -0.065 4.065 15 C 0.049 3.951 16 N -0.338 5.338 17 C 0.290 3.710 18 O -0.418 6.418 19 C 0.289 3.711 20 O -0.423 6.423 21 N -0.338 5.338 22 C 0.025 3.975 23 C -0.197 4.197 24 C -0.212 4.212 25 C -0.203 4.203 26 C -0.201 4.201 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.253 0.747 34 H 0.259 0.741 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.465 -24.944 -5.440 25.649 hybrid contribution -0.059 1.255 -0.001 1.256 sum 2.406 -23.689 -5.442 24.425 Atomic orbital electron populations 1.70185 1.08045 1.28846 1.48780 1.26601 0.96848 1.02800 0.95886 0.84648 0.77376 0.74260 0.79955 1.18142 1.19810 1.18078 1.21789 0.92560 0.81362 1.53258 0.87903 1.83947 1.35927 1.12559 1.81418 1.19878 0.91705 0.87902 0.94549 1.21401 0.93004 1.00514 1.10298 1.21180 1.00505 0.91154 0.96040 1.21039 0.93058 0.98389 1.06096 1.19434 0.94046 0.92523 1.00492 1.20290 1.00819 0.90633 0.83340 1.45925 1.57845 1.19165 1.10899 1.20127 0.79130 0.82299 0.89477 1.90747 1.50894 1.60566 1.39612 1.20075 0.79339 0.82733 0.88981 1.90789 1.50990 1.60663 1.39831 1.45735 1.57903 1.18716 1.11418 1.21115 1.00440 0.93400 0.82591 1.22402 1.04632 0.91695 1.00950 1.23187 0.97022 0.97380 1.03585 1.23063 0.99765 1.02868 0.94652 1.20257 0.99545 0.90217 1.10047 0.91877 0.86107 0.83253 0.83115 0.87891 0.90399 0.74704 0.74081 0.90964 0.90869 0.86076 0.88476 0.87529 0.87267 0.88202 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.48 13.67 21.61 0.30 -56.18 16 2 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 3 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.41 -23.81 9.49 67.92 0.64 -23.16 16 8 H 0.10 5.37 5.21 -2.91 -0.02 5.36 16 9 O -0.23 -13.80 9.76 -22.74 -0.22 -14.02 16 10 C 0.11 5.32 6.65 22.58 0.15 5.47 16 11 C -0.23 -9.66 9.17 22.39 0.21 -9.45 16 12 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 13 C -0.17 -4.71 9.70 22.30 0.22 -4.50 16 14 C -0.06 -2.02 5.25 -19.88 -0.10 -2.12 16 15 C 0.17 4.41 5.80 85.63 0.50 4.91 16 16 N -0.69 -17.51 5.54 -468.16 -2.59 -20.11 16 17 C 0.51 12.92 7.89 87.27 0.69 13.61 16 18 O -0.54 -15.01 16.48 -3.22 -0.05 -15.07 16 19 C 0.51 12.14 7.89 87.27 0.69 12.83 16 20 O -0.55 -15.91 16.48 -3.25 -0.05 -15.97 16 21 N -0.68 -11.93 5.55 -464.42 -2.58 -14.51 16 22 C 0.15 2.12 5.96 86.38 0.51 2.64 16 23 C -0.18 -1.74 5.85 -10.79 -0.06 -1.80 16 24 C -0.17 -1.44 10.18 30.59 0.31 -1.13 16 25 C -0.17 -1.34 10.25 30.59 0.31 -1.02 16 26 C -0.18 -7.42 9.65 22.39 0.22 -7.21 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 29 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.10 2.25 8.08 -2.39 -0.02 2.23 16 32 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.42 10.87 7.94 -92.71 -0.74 10.13 16 34 H 0.42 6.09 7.87 -92.71 -0.73 5.36 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.11 7.87 -2.39 -0.02 1.09 16 37 H 0.12 1.01 8.04 -2.39 -0.02 0.99 16 38 H 0.10 0.82 8.03 -2.39 -0.02 0.80 16 39 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -73.38 369.40 1.40 -71.98 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.39 Total: 33.15 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 4.97 Total: -13.83 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.88 Total: -90.80 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.33 Total: -45.05 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -73.38 1.40 -71.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116751599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.237 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds