Wall clock time and date at job start Tue Mar 31 2020 12:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 112.85246 * 2 1 4 4 C 1.34780 * 119.99778 * 50.33005 * 3 2 1 5 5 O 1.21365 * 120.00116 * 359.97438 * 4 3 2 6 6 C 1.49312 * 119.99886 * 180.02562 * 4 3 2 7 7 O 1.21395 * 119.99982 * 0.02562 * 6 4 3 8 8 N 1.34780 * 120.00077 * 179.72508 * 6 4 3 9 9 C 1.39744 * 119.99991 * 175.77538 * 8 6 4 10 10 C 1.38992 * 120.00499 * 214.86797 * 9 8 6 11 11 C 1.37966 * 119.99210 * 179.76702 * 10 9 8 12 12 C 1.38935 * 120.00619 * 0.50810 * 11 10 9 13 13 O 1.35762 * 119.99152 * 179.72351 * 12 11 10 14 14 C 1.34800 * 116.99597 * 185.36763 * 13 12 11 15 15 H 1.07998 * 120.00573 * 354.95884 * 14 13 12 16 16 C 1.38654 * 120.00013 * 174.96384 * 14 13 12 17 17 N 1.31562 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00134 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46920 * 60.00021 * 18 16 14 20 20 H 1.48501 * 109.46921 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46907 * 299.99681 * 18 16 14 22 22 C 1.38943 * 120.01583 * 359.74282 * 12 11 10 23 23 C 1.37968 * 120.00318 * 0.02562 * 22 12 11 24 24 C 1.53782 * 113.61364 * 131.19691 * 2 1 3 25 25 C 1.53952 * 87.02109 * 89.22741 * 24 2 1 26 26 C 1.53781 * 87.11188 * 25.36342 * 25 24 2 27 27 H 1.09003 * 109.47122 * 69.66634 * 1 2 3 28 28 H 1.09004 * 109.47734 * 189.66717 * 1 2 3 29 29 H 1.09000 * 109.47555 * 309.66617 * 1 2 3 30 30 H 0.96992 * 120.00184 * 230.33737 * 3 2 1 31 31 H 0.96998 * 119.99495 * 355.77361 * 8 6 4 32 32 H 1.07998 * 120.00426 * 0.02562 * 10 9 8 33 33 H 1.07999 * 119.99544 * 180.22377 * 11 10 9 34 34 H 0.97002 * 119.99968 * 180.02562 * 17 16 14 35 35 H 1.07994 * 119.99692 * 179.97438 * 22 12 11 36 36 H 1.07996 * 120.00162 * 179.97438 * 23 22 12 37 37 H 1.09001 * 113.61306 * 203.75462 * 24 2 1 38 38 H 1.08998 * 113.61140 * 334.64595 * 24 2 1 39 39 H 1.08994 * 113.54100 * 270.81164 * 25 24 2 40 40 H 1.09004 * 113.74070 * 139.94250 * 25 24 2 41 41 H 1.08997 * 113.61616 * 220.09207 * 26 25 24 42 42 H 1.08999 * 113.61464 * 89.18424 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0989 1.3501 0.0000 4 6 1.6740 2.2604 0.8985 5 8 0.8197 1.9619 1.7072 6 6 2.2534 3.6365 0.8981 7 8 3.1069 3.9355 0.0883 8 7 1.8245 4.5485 1.7930 9 6 2.4278 5.8077 1.8511 10 6 2.5718 6.4537 3.0734 11 6 3.1717 7.6947 3.1311 12 6 3.6224 8.3034 1.9663 13 8 4.2077 9.5271 2.0228 14 6 4.5214 10.1101 0.8486 15 1 4.3808 9.5710 -0.0766 16 6 5.0246 11.4020 0.8285 17 7 5.1954 12.0589 1.9555 18 14 5.4600 12.2096 -0.7986 19 1 4.2487 12.2832 -1.6544 20 1 5.9731 13.5807 -0.5490 21 1 6.5037 11.4074 -1.4857 22 6 3.4739 7.6603 0.7437 23 6 2.8783 6.4171 0.6860 24 6 2.1459 -0.9281 1.0602 25 6 2.0949 -2.0420 -0.0012 26 6 2.1459 -0.9281 -1.0602 27 1 -0.3633 0.3571 -0.9636 28 1 -0.3635 -1.0131 0.1726 29 1 -0.3634 0.6560 0.7911 30 1 2.7813 1.5888 -0.6466 31 1 1.0971 4.3308 2.3966 32 1 2.2179 5.9823 3.9783 33 1 3.2869 8.1951 4.0812 34 1 5.5471 12.9628 1.9416 35 1 3.8239 8.1339 -0.1615 36 1 2.7625 5.9174 -0.2644 37 1 3.1584 -0.6477 1.3507 38 1 1.4938 -1.1079 1.9150 39 1 1.1594 -2.6013 -0.0006 40 1 2.9737 -2.6869 -0.0032 41 1 1.4939 -1.1080 -1.9149 42 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116821629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:03 Heat of formation + Delta-G solvation = -40.322653 kcal Electronic energy + Delta-G solvation = -25532.688730 eV Core-core repulsion = 21672.761483 eV Total energy + Delta-G solvation = -3859.927247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15945 -39.99016 -38.84874 -38.04305 -36.61359 -34.34885 -33.41833 -32.22305 -30.27634 -29.47058 -28.30032 -26.20953 -25.72959 -25.04371 -23.39256 -22.30688 -21.25703 -20.07919 -19.38633 -18.74042 -17.95544 -17.30706 -16.92283 -16.40620 -16.12102 -15.78869 -15.43671 -14.59437 -14.48811 -14.43308 -14.02596 -13.73608 -13.66379 -13.60450 -13.13683 -12.94374 -12.72908 -12.61344 -12.57155 -12.04069 -11.81142 -11.68560 -11.64853 -11.58469 -11.20703 -11.11009 -11.03786 -10.81608 -10.68337 -10.47456 -9.79187 -9.53669 -9.41426 -9.20171 -8.74861 -8.26656 -7.01698 -6.48203 -4.05599 1.26515 2.12296 2.17854 2.39776 3.12514 3.13029 3.16521 3.22799 3.60150 3.94982 3.98923 4.14246 4.35139 4.37696 4.42435 4.54350 5.02690 5.06047 5.17072 5.21728 5.25708 5.35208 5.43578 5.47366 5.62507 5.62822 5.66004 5.67679 5.77575 6.02044 6.03836 6.10592 6.18440 6.24188 6.63183 6.73272 6.89752 6.96005 7.06256 7.23875 7.38169 7.45586 7.68308 7.75002 7.96498 8.09630 8.97144 9.65546 10.69303 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029007 B = 0.002274 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.067461 B =12310.854863 C =12929.479964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 N -0.691 5.691 4 C 0.515 3.485 5 O -0.518 6.518 6 C 0.494 3.506 7 O -0.511 6.511 8 N -0.624 5.624 9 C 0.022 3.978 10 C -0.085 4.085 11 C -0.178 4.178 12 C 0.150 3.850 13 O -0.173 6.173 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.222 4.222 23 C -0.060 4.060 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.139 4.139 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.413 0.587 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 -24.121 -4.170 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 N -0.344 5.344 4 C 0.296 3.704 5 O -0.394 6.394 6 C 0.275 3.725 7 O -0.386 6.386 8 N -0.269 5.269 9 C -0.071 4.071 10 C -0.105 4.105 11 C -0.198 4.198 12 C 0.095 3.905 13 O -0.076 6.076 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.242 4.242 23 C -0.080 4.080 24 C -0.182 4.182 25 C -0.176 4.176 26 C -0.177 4.177 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.250 0.750 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.526 -23.750 -3.902 25.218 hybrid contribution 0.264 0.396 -0.865 0.987 sum -7.262 -23.354 -4.767 24.918 Atomic orbital electron populations 1.22000 0.91857 1.03518 1.03779 1.21972 0.94690 0.79395 0.97738 1.45833 1.42029 1.11587 1.34928 1.20166 0.82571 0.85993 0.81719 1.90682 1.30826 1.79970 1.37905 1.20109 0.83478 0.85814 0.83102 1.90774 1.31169 1.79575 1.37113 1.42845 1.35697 1.11856 1.36503 1.17244 1.09128 0.86198 0.94485 1.20387 0.99951 0.95089 0.95039 1.20001 1.06201 0.96385 0.97185 1.19446 0.90896 0.86941 0.93201 1.83967 1.65453 1.25045 1.33107 1.21309 1.43935 0.97733 0.83818 0.88972 1.25307 0.96614 0.95385 0.99186 1.70030 1.41393 1.12045 1.26028 0.85767 0.79191 0.78409 0.80017 1.19442 1.20257 1.19427 1.21089 1.08028 0.96541 0.98531 1.20836 0.96657 0.93624 0.96864 1.23428 1.01811 0.95453 0.97548 1.22751 1.02729 0.96080 0.96007 1.23329 1.01759 0.95530 0.97108 0.92227 0.91285 0.88996 0.74995 0.75002 0.86435 0.85840 0.91889 0.85049 0.85685 0.89638 0.90533 0.89678 0.90684 0.90344 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.15 0.33 -0.93 16 2 C 0.15 1.20 1.25 -131.00 -0.16 1.04 16 3 N -0.69 -6.81 5.32 -47.32 -0.25 -7.06 16 4 C 0.51 6.38 7.64 -11.65 -0.09 6.29 16 5 O -0.52 -6.95 14.09 5.48 0.08 -6.88 16 6 C 0.49 7.23 7.73 -11.65 -0.09 7.14 16 7 O -0.51 -8.65 13.91 5.46 0.08 -8.57 16 8 N -0.62 -9.15 5.32 -10.27 -0.05 -9.20 16 9 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 10 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 11 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 12 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 13 O -0.17 -4.87 9.75 0.10 0.00 -4.87 16 14 C -0.39 -10.86 9.48 30.89 0.29 -10.57 16 15 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 17 N -0.86 -24.97 13.67 55.48 0.76 -24.22 16 18 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 23 C -0.06 -1.18 8.69 -39.40 -0.34 -1.53 16 24 C -0.14 -1.10 7.45 -25.83 -0.19 -1.29 16 25 C -0.14 -0.76 7.74 -25.83 -0.20 -0.96 16 26 C -0.14 -0.82 7.37 -25.92 -0.19 -1.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.45 7.34 -51.93 -0.38 0.07 16 29 H 0.09 0.97 5.57 -51.93 -0.29 0.68 16 30 H 0.41 3.72 8.11 -40.82 -0.33 3.39 16 31 H 0.41 5.09 8.29 -40.82 -0.34 4.75 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.13 2.91 5.63 -52.49 -0.30 2.61 16 36 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.08 0.40 7.64 -51.93 -0.40 0.01 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 42 H 0.09 0.49 8.13 -51.93 -0.42 0.06 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -31.76 353.95 -6.90 -38.65 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.14 Total: 10.27 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.67 Total: -8.85 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.45 Total: -40.48 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.15 Total: -20.32 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.76 -6.90 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116821629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.668 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds