Wall clock time and date at job start Tue Mar 31 2020 12:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 112.85246 * 2 1 4 4 C 1.34780 * 119.99778 * 50.33005 * 3 2 1 5 5 O 1.21365 * 120.00116 * 359.97438 * 4 3 2 6 6 C 1.49312 * 119.99886 * 180.02562 * 4 3 2 7 7 O 1.21395 * 119.99982 * 0.02562 * 6 4 3 8 8 N 1.34780 * 120.00077 * 179.72508 * 6 4 3 9 9 C 1.39744 * 119.99991 * 175.77538 * 8 6 4 10 10 C 1.38992 * 120.00499 * 214.86797 * 9 8 6 11 11 C 1.37966 * 119.99210 * 179.76702 * 10 9 8 12 12 C 1.38935 * 120.00619 * 0.50810 * 11 10 9 13 13 O 1.35762 * 119.99152 * 179.72351 * 12 11 10 14 14 C 1.34800 * 116.99597 * 185.36763 * 13 12 11 15 15 H 1.07998 * 120.00573 * 354.95884 * 14 13 12 16 16 C 1.38654 * 120.00013 * 174.96384 * 14 13 12 17 17 N 1.31562 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00134 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46920 * 60.00021 * 18 16 14 20 20 H 1.48501 * 109.46921 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46907 * 299.99681 * 18 16 14 22 22 C 1.38943 * 120.01583 * 359.74282 * 12 11 10 23 23 C 1.37968 * 120.00318 * 0.02562 * 22 12 11 24 24 C 1.53782 * 113.61364 * 131.19691 * 2 1 3 25 25 C 1.53952 * 87.02109 * 89.22741 * 24 2 1 26 26 C 1.53781 * 87.11188 * 25.36342 * 25 24 2 27 27 H 1.09003 * 109.47122 * 69.66634 * 1 2 3 28 28 H 1.09004 * 109.47734 * 189.66717 * 1 2 3 29 29 H 1.09000 * 109.47555 * 309.66617 * 1 2 3 30 30 H 0.96992 * 120.00184 * 230.33737 * 3 2 1 31 31 H 0.96998 * 119.99495 * 355.77361 * 8 6 4 32 32 H 1.07998 * 120.00426 * 0.02562 * 10 9 8 33 33 H 1.07999 * 119.99544 * 180.22377 * 11 10 9 34 34 H 0.97002 * 119.99968 * 180.02562 * 17 16 14 35 35 H 1.07994 * 119.99692 * 179.97438 * 22 12 11 36 36 H 1.07996 * 120.00162 * 179.97438 * 23 22 12 37 37 H 1.09001 * 113.61306 * 203.75462 * 24 2 1 38 38 H 1.08998 * 113.61140 * 334.64595 * 24 2 1 39 39 H 1.08994 * 113.54100 * 270.81164 * 25 24 2 40 40 H 1.09004 * 113.74070 * 139.94250 * 25 24 2 41 41 H 1.08997 * 113.61616 * 220.09207 * 26 25 24 42 42 H 1.08999 * 113.61464 * 89.18424 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0989 1.3501 0.0000 4 6 1.6740 2.2604 0.8985 5 8 0.8197 1.9619 1.7072 6 6 2.2534 3.6365 0.8981 7 8 3.1069 3.9355 0.0883 8 7 1.8245 4.5485 1.7930 9 6 2.4278 5.8077 1.8511 10 6 2.5718 6.4537 3.0734 11 6 3.1717 7.6947 3.1311 12 6 3.6224 8.3034 1.9663 13 8 4.2077 9.5271 2.0228 14 6 4.5214 10.1101 0.8486 15 1 4.3808 9.5710 -0.0766 16 6 5.0246 11.4020 0.8285 17 7 5.1954 12.0589 1.9555 18 14 5.4600 12.2096 -0.7986 19 1 4.2487 12.2832 -1.6544 20 1 5.9731 13.5807 -0.5490 21 1 6.5037 11.4074 -1.4857 22 6 3.4739 7.6603 0.7437 23 6 2.8783 6.4171 0.6860 24 6 2.1459 -0.9281 1.0602 25 6 2.0949 -2.0420 -0.0012 26 6 2.1459 -0.9281 -1.0602 27 1 -0.3633 0.3571 -0.9636 28 1 -0.3635 -1.0131 0.1726 29 1 -0.3634 0.6560 0.7911 30 1 2.7813 1.5888 -0.6466 31 1 1.0971 4.3308 2.3966 32 1 2.2179 5.9823 3.9783 33 1 3.2869 8.1951 4.0812 34 1 5.5471 12.9628 1.9416 35 1 3.8239 8.1339 -0.1615 36 1 2.7625 5.9174 -0.2644 37 1 3.1584 -0.6477 1.3507 38 1 1.4938 -1.1079 1.9150 39 1 1.1594 -2.6013 -0.0006 40 1 2.9737 -2.6869 -0.0032 41 1 1.4939 -1.1080 -1.9149 42 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116821629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:02 Heat of formation + Delta-G solvation = -62.317430 kcal Electronic energy + Delta-G solvation = -25533.642496 eV Core-core repulsion = 21672.761483 eV Total energy + Delta-G solvation = -3860.881012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20059 -41.13255 -40.33273 -39.07884 -38.21363 -35.69983 -34.41856 -34.14696 -31.91978 -30.25579 -29.73031 -27.46046 -26.74111 -26.31041 -24.35406 -23.83484 -22.67141 -21.25920 -20.31133 -19.95677 -19.51363 -18.82250 -18.23846 -17.38381 -17.26539 -17.00706 -16.31408 -16.15486 -15.92716 -15.64176 -15.49252 -15.26011 -15.04486 -14.69048 -14.56606 -14.19501 -13.73341 -13.58631 -13.40647 -13.31273 -13.25652 -13.19975 -12.75480 -12.69992 -12.48073 -12.23026 -12.15254 -12.11896 -11.62189 -11.47115 -11.36337 -11.08050 -10.62868 -10.48378 -10.20869 -9.88297 -8.70634 -8.47543 -6.14412 0.06552 0.50332 0.69605 1.26676 1.35907 1.46154 1.51642 2.07372 2.17914 2.57525 2.78927 3.12444 3.29792 3.47729 3.48521 3.60103 3.82202 3.88446 4.05532 4.07800 4.44448 4.44495 4.57600 4.63844 4.64334 4.72351 4.84229 4.87313 5.03432 5.04345 5.05064 5.06719 5.09640 5.18767 5.26963 5.34115 5.41195 5.48497 5.51589 5.65908 5.92014 6.00937 6.10872 6.33836 6.72525 6.90593 6.96981 7.74846 8.74687 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029007 B = 0.002274 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.067461 B =12310.854863 C =12929.479964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 N -0.678 5.678 4 C 0.520 3.480 5 O -0.528 6.528 6 C 0.496 3.504 7 O -0.532 6.532 8 N -0.619 5.619 9 C 0.048 3.952 10 C -0.071 4.071 11 C -0.180 4.180 12 C 0.112 3.888 13 O -0.224 6.224 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.020 4.020 17 N -0.916 5.916 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.228 4.228 23 C -0.068 4.068 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.131 4.131 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.418 0.582 31 H 0.429 0.571 32 H 0.164 0.836 33 H 0.131 0.869 34 H 0.274 0.726 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -27.330 -5.231 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 N -0.331 5.331 4 C 0.300 3.700 5 O -0.405 6.405 6 C 0.279 3.721 7 O -0.409 6.409 8 N -0.266 5.266 9 C -0.045 4.045 10 C -0.091 4.091 11 C -0.200 4.200 12 C 0.061 3.939 13 O -0.130 6.130 14 C -0.491 4.491 15 H 0.118 0.882 16 C -0.218 4.218 17 N -0.554 5.554 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.183 1.183 22 C -0.248 4.248 23 C -0.088 4.088 24 C -0.188 4.188 25 C -0.165 4.165 26 C -0.169 4.169 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.255 0.745 31 H 0.268 0.732 32 H 0.182 0.818 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.587 -27.054 -4.969 28.816 hybrid contribution 0.416 0.978 -0.474 1.164 sum -8.171 -26.076 -5.443 27.863 Atomic orbital electron populations 1.21966 0.91812 1.04086 1.03048 1.22326 0.94892 0.78427 0.99454 1.45919 1.41449 1.11845 1.33866 1.19702 0.82656 0.85216 0.82413 1.90700 1.31367 1.79842 1.38592 1.20603 0.82799 0.86693 0.82036 1.90772 1.32082 1.80186 1.37835 1.42793 1.36085 1.10660 1.37086 1.17378 1.06330 0.86852 0.93935 1.20775 0.98047 0.93618 0.96635 1.20306 1.05761 0.97366 0.96521 1.19971 0.92322 0.86496 0.95079 1.83937 1.68383 1.27134 1.33525 1.21762 1.44485 0.98507 0.84344 0.88234 1.26556 0.96273 0.95675 1.03322 1.70167 1.43891 1.12670 1.28677 0.84676 0.79366 0.77357 0.75021 1.18223 1.19486 1.18314 1.21108 1.08450 0.97426 0.97771 1.20935 0.96869 0.92872 0.98133 1.23451 1.01149 0.96450 0.97723 1.22749 1.03829 0.95601 0.94360 1.23335 1.02105 0.94435 0.97013 0.91847 0.89492 0.91372 0.74468 0.73186 0.81843 0.85148 0.91745 0.85977 0.84963 0.90303 0.91321 0.88550 0.89683 0.89129 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.95 71.98 0.64 -1.49 16 2 C 0.13 1.84 1.25 4.13 0.01 1.85 16 3 N -0.68 -11.92 5.32 -421.98 -2.24 -14.16 16 4 C 0.52 11.80 7.64 87.23 0.67 12.47 16 5 O -0.53 -13.09 14.09 -3.29 -0.05 -13.14 16 6 C 0.50 13.45 7.73 87.23 0.67 14.13 16 7 O -0.53 -17.10 13.91 -3.39 -0.05 -17.14 16 8 N -0.62 -16.45 5.32 -304.74 -1.62 -18.07 16 9 C 0.05 1.61 6.30 38.24 0.24 1.85 16 10 C -0.07 -2.30 9.96 22.39 0.22 -2.08 16 11 C -0.18 -7.34 9.98 22.37 0.22 -7.12 16 12 C 0.11 5.56 6.65 22.61 0.15 5.71 16 13 O -0.22 -13.32 9.75 -22.57 -0.22 -13.54 16 14 C -0.41 -24.15 9.48 67.92 0.64 -23.50 16 15 H 0.10 5.36 5.19 -2.91 -0.02 5.35 16 16 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 17 N -0.92 -55.79 13.67 21.61 0.30 -55.50 16 18 Si 1.02 42.91 29.55 68.60 2.03 44.93 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 C -0.23 -10.31 9.16 22.37 0.20 -10.10 16 23 C -0.07 -2.64 8.69 22.39 0.19 -2.45 16 24 C -0.15 -1.95 7.45 31.18 0.23 -1.72 16 25 C -0.13 -1.00 7.74 31.18 0.24 -0.76 16 26 C -0.13 -1.13 7.37 31.12 0.23 -0.90 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.89 7.34 -2.39 -0.02 0.88 16 29 H 0.07 1.32 5.57 -2.39 -0.01 1.31 16 30 H 0.42 6.63 8.11 -92.71 -0.75 5.88 16 31 H 0.43 9.12 8.29 -92.71 -0.77 8.35 16 32 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.12 5.64 5.63 -2.91 -0.02 5.62 16 36 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.10 0.57 7.64 -2.39 -0.02 0.55 16 40 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.09 0.60 8.10 -2.39 -0.02 0.58 16 42 H 0.10 0.74 8.13 -2.39 -0.02 0.72 16 Total: -1.00 -72.61 353.95 2.75 -69.86 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.43 Total: 31.55 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.04 Total: -14.79 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -3.57 Total: -87.73 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.31 Total: -43.82 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.61 2.75 -69.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116821629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.538 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds