Wall clock time and date at job start Tue Mar 31 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86794 * 120.00261 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99939 * 3 2 1 5 5 H 1.48505 * 109.47217 * 29.99640 * 3 2 1 6 6 H 1.48498 * 109.47402 * 149.99648 * 3 2 1 7 7 C 1.38633 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99792 * 0.02562 * 7 2 1 9 9 O 1.34809 * 119.99854 * 180.02562 * 7 2 1 10 10 C 1.35784 * 116.99983 * 174.96638 * 9 7 2 11 11 C 1.38900 * 119.99802 * 5.34000 * 10 9 7 12 12 C 1.38008 * 120.00252 * 180.02562 * 11 10 9 13 13 C 1.38908 * 119.99899 * 359.97438 * 12 11 10 14 14 N 1.40028 * 120.00220 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99763 * 35.13425 * 14 13 12 16 16 O 1.21583 * 120.00125 * 355.48896 * 15 14 13 17 17 N 1.34778 * 119.99844 * 175.49436 * 15 14 13 18 18 C 1.46497 * 119.99846 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.47160 * 179.97438 * 18 17 15 20 20 C 1.29983 * 118.56470 * 94.99956 * 19 18 17 21 21 C 1.50386 * 122.51171 * 180.43827 * 20 19 18 22 22 C 1.53124 * 109.59457 * 343.36567 * 21 20 19 23 23 O 1.43311 * 108.41152 * 47.82810 * 22 21 20 24 24 C 1.42891 * 113.02346 * 291.85653 * 23 22 21 25 25 C 1.38909 * 119.99990 * 0.25921 * 13 12 11 26 26 C 1.38018 * 119.99435 * 359.48203 * 25 13 12 27 27 H 0.96998 * 119.99628 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00184 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.00383 * 179.97438 * 12 11 10 30 30 H 0.97007 * 120.00274 * 215.12856 * 14 13 12 31 31 H 0.97003 * 120.00152 * 359.97438 * 17 15 14 32 32 H 1.09001 * 109.47408 * 59.99766 * 18 17 15 33 33 H 1.08998 * 109.47526 * 299.99690 * 18 17 15 34 34 H 1.08004 * 118.74700 * 0.45630 * 20 19 18 35 35 H 1.09010 * 109.44872 * 223.33503 * 21 20 19 36 36 H 1.08997 * 109.43182 * 103.39757 * 21 20 19 37 37 H 1.09001 * 109.68373 * 167.56719 * 22 21 20 38 38 H 1.08993 * 109.68881 * 288.09182 * 22 21 20 39 39 H 1.08998 * 109.32253 * 289.91990 * 24 23 22 40 40 H 1.09002 * 109.25800 * 170.27614 * 24 23 22 41 41 H 1.08002 * 120.00596 * 179.74965 * 25 13 12 42 42 H 1.07997 * 119.99709 * 180.25338 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9734 -2.4057 0.1077 11 6 3.2215 -3.5736 0.0982 12 6 3.8479 -4.7985 0.2071 13 6 5.2304 -4.8635 0.3258 14 7 5.8659 -6.1063 0.4368 15 6 5.3809 -7.1731 -0.2288 16 8 4.3459 -7.0769 -0.8596 17 7 6.0430 -8.3465 -0.1951 18 6 5.5154 -9.5063 -0.9182 19 6 6.4363 -10.6828 -0.7208 20 6 6.1666 -11.5310 0.2265 21 6 7.0298 -12.7300 0.5077 22 6 7.9454 -12.9960 -0.6904 23 8 8.5563 -11.7586 -1.0768 24 6 7.6260 -10.8239 -1.6271 25 6 5.9819 -3.6954 0.3402 26 6 5.3559 -2.4707 0.2259 27 1 -0.4849 0.8401 -0.0004 28 1 2.1466 -3.5231 0.0063 29 1 3.2633 -5.7066 0.2001 30 1 6.6554 -6.1994 0.9928 31 1 6.8689 -8.4232 0.3079 32 1 5.4482 -9.2722 -1.9807 33 1 4.5244 -9.7522 -0.5370 34 1 5.2890 -11.3687 0.8347 35 1 6.3967 -13.6004 0.6810 36 1 7.6365 -12.5404 1.3932 37 1 8.7161 -13.7144 -0.4112 38 1 7.3590 -13.3906 -1.5202 39 1 7.2960 -11.1763 -2.6044 40 1 8.1128 -9.8550 -1.7379 41 1 7.0565 -3.7457 0.4365 42 1 5.9405 -1.5627 0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117363808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:14 Heat of formation + Delta-G solvation = -49.359188 kcal Electronic energy + Delta-G solvation = -25067.990537 eV Core-core repulsion = 21207.671437 eV Total energy + Delta-G solvation = -3860.319101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49031 -39.84032 -38.86931 -36.91924 -35.69300 -34.04389 -33.58723 -32.29164 -31.68044 -30.23552 -28.27557 -26.48085 -25.88786 -25.01824 -23.31197 -22.42490 -21.48855 -20.53650 -18.95776 -18.37237 -17.80537 -17.50505 -16.86467 -16.74626 -16.50291 -15.63186 -15.47260 -14.95885 -14.67591 -14.33795 -14.16042 -13.88554 -13.78508 -13.72664 -13.56999 -13.36528 -12.91716 -12.71897 -12.68370 -12.37092 -12.23477 -11.81904 -11.67989 -11.58527 -11.10871 -10.93000 -10.71341 -10.27899 -10.10197 -10.01186 -9.67503 -9.47353 -9.22186 -9.20909 -8.72206 -8.23823 -7.00642 -6.37043 -4.02767 1.40512 2.09557 2.19230 2.82337 3.23866 3.27771 3.30931 3.37947 3.42743 4.11225 4.23468 4.25941 4.27313 4.41022 4.54240 4.64864 4.81800 4.89214 4.92042 4.98329 5.14705 5.16111 5.25511 5.37905 5.41482 5.44116 5.59420 5.68983 5.92082 6.11305 6.13605 6.19088 6.27010 6.32783 6.60946 6.62081 6.68278 6.87862 7.13844 7.19216 7.35628 7.63719 7.84323 8.01449 8.07528 8.64365 8.98085 9.60415 10.70672 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.041432 B = 0.001996 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.642516 B =14027.840761 C =14408.344236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.150 3.850 11 C -0.206 4.206 12 C -0.067 4.067 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.699 3.301 16 O -0.573 6.573 17 N -0.745 5.745 18 C 0.179 3.821 19 C -0.184 4.184 20 C -0.117 4.117 21 C -0.129 4.129 22 C 0.055 3.945 23 O -0.377 6.377 24 C 0.097 3.903 25 C -0.098 4.098 26 C -0.177 4.177 27 H 0.279 0.721 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.398 0.602 31 H 0.396 0.604 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.027 -24.340 1.232 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.098 3.902 11 C -0.226 4.226 12 C -0.087 4.087 13 C -0.030 4.030 14 N -0.323 5.323 15 C 0.400 3.600 16 O -0.450 6.450 17 N -0.402 5.402 18 C 0.055 3.945 19 C -0.185 4.185 20 C -0.137 4.137 21 C -0.166 4.166 22 C -0.022 4.022 23 O -0.295 6.295 24 C 0.021 3.979 25 C -0.119 4.119 26 C -0.197 4.197 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.232 0.768 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.133 -23.868 0.612 28.815 hybrid contribution 0.519 0.478 0.503 0.866 sum 16.653 -23.390 1.114 28.734 Atomic orbital electron populations 1.69662 1.05545 1.28400 1.48227 1.24471 0.95039 0.98806 0.95806 0.86168 0.80283 0.81445 0.78906 1.19934 1.20890 1.18361 1.20776 0.76933 0.96656 1.51945 0.87593 1.83562 1.22577 1.25643 1.80525 1.19143 0.91693 0.85578 0.93828 1.21232 1.01291 0.91289 1.08751 1.20941 0.92501 0.97844 0.97391 1.17095 0.91520 0.82674 1.11744 1.42301 1.32506 1.07529 1.49964 1.15953 0.83759 0.80147 0.80169 1.90951 1.23715 1.83220 1.47096 1.45131 1.28669 1.09741 1.56673 1.20029 0.95296 0.81775 0.97423 1.21731 0.99215 0.97789 0.99758 1.22306 0.99318 0.95325 0.96722 1.21181 0.98160 0.97291 0.99995 1.22679 0.96997 0.86630 0.95849 1.88155 1.33600 1.25609 1.82183 1.21370 0.88164 0.93966 0.94409 1.20322 0.98107 0.90741 1.02700 1.19961 0.91929 0.97245 1.10562 0.91114 0.84618 0.85330 0.76772 0.77068 0.90815 0.90843 0.86586 0.89609 0.89496 0.88405 0.92590 0.91568 0.87777 0.86629 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.96 55.48 0.77 -25.02 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.89 28.61 -169.99 -4.86 17.02 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.39 -11.10 9.94 30.88 0.31 -10.80 16 8 H 0.11 3.12 5.43 -52.48 -0.28 2.84 16 9 O -0.22 -5.82 8.58 0.00 0.00 -5.82 16 10 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 11 C -0.21 -4.69 9.16 -39.42 -0.36 -5.06 16 12 C -0.07 -1.36 8.69 -39.42 -0.34 -1.70 16 13 C 0.06 1.09 6.30 -83.62 -0.53 0.57 16 14 N -0.68 -9.07 5.35 -14.18 -0.08 -9.15 16 15 C 0.70 10.02 8.41 -86.92 -0.73 9.29 16 16 O -0.57 -10.84 13.78 5.29 0.07 -10.77 16 17 N -0.75 -7.30 5.55 -66.41 -0.37 -7.67 16 18 C 0.18 1.62 5.73 -5.19 -0.03 1.59 16 19 C -0.18 -1.30 5.29 -101.01 -0.53 -1.83 16 20 C -0.12 -0.75 9.53 -35.89 -0.34 -1.09 16 21 C -0.13 -0.64 6.36 -27.97 -0.18 -0.82 16 22 C 0.06 0.30 6.89 37.22 0.26 0.55 16 23 O -0.38 -3.02 10.85 -35.23 -0.38 -3.40 16 24 C 0.10 0.67 6.76 35.77 0.24 0.91 16 25 C -0.10 -1.64 9.96 -39.41 -0.39 -2.03 16 26 C -0.18 -3.48 9.99 -39.42 -0.39 -3.87 16 27 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.14 3.26 5.63 -52.49 -0.30 2.97 16 29 H 0.13 2.66 6.22 -52.49 -0.33 2.33 16 30 H 0.40 3.76 8.84 -40.82 -0.36 3.40 16 31 H 0.40 2.83 8.48 -40.82 -0.35 2.49 16 32 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 34 H 0.12 0.72 7.83 -52.48 -0.41 0.30 16 35 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.27 8.10 -51.93 -0.42 -0.15 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -33.81 354.81 -8.25 -42.06 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.37 Total: 6.75 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -3.38 Total: -9.36 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.33 Total: -41.84 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.31 Total: -19.99 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.86 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.81 -8.25 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117363808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.303 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds