Wall clock time and date at job start Tue Mar 31 2020 12:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86794 * 120.00261 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99939 * 3 2 1 5 5 H 1.48505 * 109.47217 * 29.99640 * 3 2 1 6 6 H 1.48498 * 109.47402 * 149.99648 * 3 2 1 7 7 C 1.38633 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99792 * 0.02562 * 7 2 1 9 9 O 1.34809 * 119.99854 * 180.02562 * 7 2 1 10 10 C 1.35784 * 116.99983 * 174.96638 * 9 7 2 11 11 C 1.38900 * 119.99802 * 5.34000 * 10 9 7 12 12 C 1.38008 * 120.00252 * 180.02562 * 11 10 9 13 13 C 1.38908 * 119.99899 * 359.97438 * 12 11 10 14 14 N 1.40028 * 120.00220 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99763 * 35.13425 * 14 13 12 16 16 O 1.21583 * 120.00125 * 355.48896 * 15 14 13 17 17 N 1.34778 * 119.99844 * 175.49436 * 15 14 13 18 18 C 1.46497 * 119.99846 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.47160 * 179.97438 * 18 17 15 20 20 C 1.29983 * 118.56470 * 94.99956 * 19 18 17 21 21 C 1.50386 * 122.51171 * 180.43827 * 20 19 18 22 22 C 1.53124 * 109.59457 * 343.36567 * 21 20 19 23 23 O 1.43311 * 108.41152 * 47.82810 * 22 21 20 24 24 C 1.42891 * 113.02346 * 291.85653 * 23 22 21 25 25 C 1.38909 * 119.99990 * 0.25921 * 13 12 11 26 26 C 1.38018 * 119.99435 * 359.48203 * 25 13 12 27 27 H 0.96998 * 119.99628 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00184 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.00383 * 179.97438 * 12 11 10 30 30 H 0.97007 * 120.00274 * 215.12856 * 14 13 12 31 31 H 0.97003 * 120.00152 * 359.97438 * 17 15 14 32 32 H 1.09001 * 109.47408 * 59.99766 * 18 17 15 33 33 H 1.08998 * 109.47526 * 299.99690 * 18 17 15 34 34 H 1.08004 * 118.74700 * 0.45630 * 20 19 18 35 35 H 1.09010 * 109.44872 * 223.33503 * 21 20 19 36 36 H 1.08997 * 109.43182 * 103.39757 * 21 20 19 37 37 H 1.09001 * 109.68373 * 167.56719 * 22 21 20 38 38 H 1.08993 * 109.68881 * 288.09182 * 22 21 20 39 39 H 1.08998 * 109.32253 * 289.91990 * 24 23 22 40 40 H 1.09002 * 109.25800 * 170.27614 * 24 23 22 41 41 H 1.08002 * 120.00596 * 179.74965 * 25 13 12 42 42 H 1.07997 * 119.99709 * 180.25338 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9734 -2.4057 0.1077 11 6 3.2215 -3.5736 0.0982 12 6 3.8479 -4.7985 0.2071 13 6 5.2304 -4.8635 0.3258 14 7 5.8659 -6.1063 0.4368 15 6 5.3809 -7.1731 -0.2288 16 8 4.3459 -7.0769 -0.8596 17 7 6.0430 -8.3465 -0.1951 18 6 5.5154 -9.5063 -0.9182 19 6 6.4363 -10.6828 -0.7208 20 6 6.1666 -11.5310 0.2265 21 6 7.0298 -12.7300 0.5077 22 6 7.9454 -12.9960 -0.6904 23 8 8.5563 -11.7586 -1.0768 24 6 7.6260 -10.8239 -1.6271 25 6 5.9819 -3.6954 0.3402 26 6 5.3559 -2.4707 0.2259 27 1 -0.4849 0.8401 -0.0004 28 1 2.1466 -3.5231 0.0063 29 1 3.2633 -5.7066 0.2001 30 1 6.6554 -6.1994 0.9928 31 1 6.8689 -8.4232 0.3079 32 1 5.4482 -9.2722 -1.9807 33 1 4.5244 -9.7522 -0.5370 34 1 5.2890 -11.3687 0.8347 35 1 6.3967 -13.6004 0.6810 36 1 7.6365 -12.5404 1.3932 37 1 8.7161 -13.7144 -0.4112 38 1 7.3590 -13.3906 -1.5202 39 1 7.2960 -11.1763 -2.6044 40 1 8.1128 -9.8550 -1.7379 41 1 7.0565 -3.7457 0.4365 42 1 5.9405 -1.5627 0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117363808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:13 Heat of formation + Delta-G solvation = -73.794970 kcal Electronic energy + Delta-G solvation = -25069.050152 eV Core-core repulsion = 21207.671437 eV Total energy + Delta-G solvation = -3861.378716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69282 -40.70048 -40.28905 -38.44402 -36.60836 -35.43668 -34.45893 -34.20582 -32.31338 -31.85727 -29.74824 -27.52022 -26.81635 -26.36864 -24.19747 -23.72763 -22.91560 -21.84340 -20.17362 -19.61740 -19.23159 -18.81835 -18.33268 -17.30481 -17.14865 -16.78233 -16.54779 -16.25928 -15.87316 -15.67448 -15.62931 -15.41696 -15.01525 -14.92652 -14.43334 -14.21766 -14.14958 -14.11109 -13.92677 -13.44028 -13.35668 -13.28336 -13.17236 -12.72921 -12.45975 -12.30707 -12.02146 -11.58112 -11.50659 -11.37302 -11.01003 -10.65703 -10.59672 -10.16719 -10.02126 -9.84192 -8.63075 -8.47978 -6.20217 0.50830 0.55066 0.82620 1.33537 1.38646 1.54543 1.78652 2.06870 2.30337 2.78773 2.92697 3.04758 3.18611 3.29051 3.56711 3.68599 4.01366 4.09311 4.12128 4.23692 4.33260 4.43909 4.48263 4.51062 4.61636 4.62350 4.65428 4.74493 4.79796 4.96751 5.03309 5.06337 5.19850 5.33323 5.38322 5.41879 5.50848 5.62899 5.74266 5.76517 5.92967 5.99316 6.14613 6.23044 6.85658 7.01889 7.51012 7.58951 8.63889 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.041432 B = 0.001996 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.642516 B =14027.840761 C =14408.344236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.399 4.399 8 H 0.075 0.925 9 O -0.241 6.241 10 C 0.110 3.890 11 C -0.222 4.222 12 C -0.082 4.082 13 C 0.090 3.910 14 N -0.662 5.662 15 C 0.696 3.304 16 O -0.622 6.622 17 N -0.721 5.721 18 C 0.180 3.820 19 C -0.187 4.187 20 C -0.111 4.111 21 C -0.128 4.128 22 C 0.048 3.952 23 O -0.396 6.396 24 C 0.097 3.903 25 C -0.079 4.079 26 C -0.166 4.166 27 H 0.284 0.716 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.424 0.576 31 H 0.413 0.587 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.173 0.827 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.207 -25.627 1.986 33.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.476 4.476 8 H 0.093 0.907 9 O -0.148 6.148 10 C 0.061 3.939 11 C -0.242 4.242 12 C -0.103 4.103 13 C -0.005 4.005 14 N -0.311 5.311 15 C 0.397 3.603 16 O -0.502 6.502 17 N -0.378 5.378 18 C 0.057 3.943 19 C -0.188 4.188 20 C -0.131 4.131 21 C -0.164 4.164 22 C -0.028 4.028 23 O -0.315 6.315 24 C 0.021 3.979 25 C -0.099 4.099 26 C -0.185 4.185 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.263 0.737 31 H 0.250 0.750 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.191 0.809 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.405 -25.245 1.400 32.490 hybrid contribution -0.600 0.448 0.296 0.806 sum 19.804 -24.797 1.697 31.780 Atomic orbital electron populations 1.69757 1.07068 1.29609 1.50264 1.25363 0.95952 1.02417 0.95481 0.85132 0.78882 0.76879 0.79280 1.19134 1.19326 1.18097 1.20674 0.78289 0.95985 1.52610 0.90748 1.83500 1.20972 1.27106 1.83239 1.19680 0.93467 0.84736 0.96059 1.21113 1.00107 0.92740 1.10279 1.20917 0.94326 0.96348 0.98659 1.17207 0.90448 0.84878 1.07932 1.42088 1.32904 1.05910 1.50228 1.16155 0.83306 0.81120 0.79757 1.90943 1.26039 1.84094 1.49110 1.44957 1.28605 1.08377 1.55882 1.20030 0.95495 0.82092 0.96722 1.21510 0.99293 0.97330 1.00687 1.22516 0.99211 0.95414 0.95933 1.21229 0.98108 0.97187 0.99916 1.22882 0.97663 0.86059 0.96192 1.88129 1.34418 1.26528 1.82386 1.21377 0.87913 0.94119 0.94482 1.20821 1.00632 0.88707 0.99788 1.20390 0.90079 0.99609 1.08440 0.90606 0.87796 0.86212 0.73735 0.75007 0.91661 0.91820 0.86445 0.87855 0.88997 0.86899 0.92159 0.91161 0.87584 0.80932 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.96 21.61 0.30 -56.56 16 2 C 0.01 0.34 5.49 84.83 0.47 0.81 16 3 Si 0.98 46.00 28.61 68.60 1.96 47.97 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.40 -24.31 9.94 67.91 0.68 -23.63 16 8 H 0.07 4.84 5.43 -2.91 -0.02 4.82 16 9 O -0.24 -13.29 8.58 -22.91 -0.20 -13.49 16 10 C 0.11 5.27 6.65 22.59 0.15 5.42 16 11 C -0.22 -10.74 9.16 22.37 0.20 -10.54 16 12 C -0.08 -3.40 8.69 22.38 0.19 -3.20 16 13 C 0.09 2.91 6.30 38.15 0.24 3.15 16 14 N -0.66 -15.45 5.35 -317.05 -1.69 -17.15 16 15 C 0.70 18.58 8.41 179.05 1.51 20.08 16 16 O -0.62 -23.41 13.78 -3.98 -0.05 -23.46 16 17 N -0.72 -12.40 5.55 -482.29 -2.68 -15.08 16 18 C 0.18 3.03 5.73 85.64 0.49 3.52 16 19 C -0.19 -2.28 5.29 -15.58 -0.08 -2.36 16 20 C -0.11 -1.17 9.53 26.60 0.25 -0.91 16 21 C -0.13 -0.91 6.36 29.79 0.19 -0.72 16 22 C 0.05 0.40 6.89 72.02 0.50 0.90 16 23 O -0.40 -5.47 10.85 -148.98 -1.62 -7.09 16 24 C 0.10 1.16 6.76 71.09 0.48 1.64 16 25 C -0.08 -2.30 9.96 22.38 0.22 -2.07 16 26 C -0.17 -6.09 9.99 22.38 0.22 -5.87 16 27 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 28 H 0.10 5.59 5.63 -2.91 -0.02 5.57 16 29 H 0.12 5.16 6.22 -2.91 -0.02 5.14 16 30 H 0.42 5.83 8.84 -92.70 -0.82 5.01 16 31 H 0.41 4.45 8.48 -92.71 -0.79 3.66 16 32 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 33 H 0.06 1.22 7.86 -2.39 -0.02 1.20 16 34 H 0.12 1.20 7.83 -2.91 -0.02 1.18 16 35 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.45 8.10 -2.39 -0.02 0.43 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -78.88 354.81 1.21 -77.67 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.53 Total: 20.97 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.71 Total: -13.79 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -4.07 Total: -88.79 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.87 Total: -44.03 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.96 Total: 47.97 kcal Total: -78.88 1.21 -77.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117363808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.878 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds