Wall clock time and date at job start Tue Mar 31 2020 12:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48505 * 109.47253 * 275.25362 * 3 2 1 5 5 H 1.48495 * 109.47179 * 35.25249 * 3 2 1 6 6 H 1.48503 * 109.47044 * 155.25626 * 3 2 1 7 7 C 1.38896 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00108 * 347.52690 * 7 2 1 9 9 N 1.37214 * 120.00058 * 167.52550 * 7 2 1 10 10 C 1.34785 * 119.99808 * 131.01820 * 9 7 2 11 11 O 1.21269 * 119.99456 * 180.02562 * 10 9 7 12 12 C 1.50692 * 119.99792 * 359.97438 * 10 9 7 13 13 H 1.08997 * 109.86545 * 304.29728 * 12 10 9 14 14 O 1.43356 * 109.86367 * 183.32789 * 12 10 9 15 15 C 1.44259 * 109.82248 * 240.57847 * 14 12 10 16 16 C 1.53990 * 104.54372 * 336.26508 * 15 14 12 17 17 H 1.09002 * 109.69837 * 281.35319 * 16 15 14 18 18 C 1.50959 * 112.59682 * 159.09424 * 16 15 14 19 19 O 1.42683 * 111.79188 * 293.72530 * 18 16 15 20 20 C 1.43255 * 112.51558 * 299.91680 * 19 18 16 21 21 C 1.52722 * 108.26453 * 65.61131 * 20 19 18 22 22 C 1.53120 * 110.61944 * 299.80820 * 21 20 19 23 23 H 1.09001 * 112.79685 * 283.33408 * 22 21 20 24 24 C 1.39421 * 120.00359 * 311.02272 * 9 7 2 25 25 C 1.39071 * 119.69415 * 347.14448 * 24 9 7 26 26 C 1.38380 * 119.09896 * 180.02562 * 25 24 9 27 27 C 1.38830 * 118.49338 * 0.02562 * 26 25 24 28 28 C 1.38148 * 119.30653 * 359.97438 * 27 26 25 29 29 N 1.31877 * 120.85663 * 359.72823 * 28 27 26 30 30 H 0.97010 * 119.99924 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.35209 * 217.52733 * 15 14 12 32 32 H 1.09002 * 110.47949 * 95.06387 * 15 14 12 33 33 H 1.09005 * 109.01527 * 54.31494 * 18 16 15 34 34 H 1.08997 * 109.01948 * 173.19999 * 18 16 15 35 35 H 1.09002 * 109.70519 * 185.30591 * 20 19 18 36 36 H 1.09004 * 109.70839 * 305.91827 * 20 19 18 37 37 H 1.09000 * 109.24664 * 179.51432 * 21 20 19 38 38 H 1.09003 * 109.24477 * 60.10432 * 21 20 19 39 39 H 1.07997 * 120.45131 * 0.02562 * 25 24 9 40 40 H 1.07997 * 120.75857 * 179.97438 * 26 25 24 41 41 H 1.07991 * 120.34699 * 179.97438 * 27 26 25 42 42 H 1.08005 * 119.56706 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3846 2.1105 -1.3942 5 1 1.5055 2.6181 0.8081 6 1 3.5968 1.4106 0.5860 7 6 2.0085 -1.2029 -0.0005 8 1 1.4876 -2.1272 0.2010 9 7 3.3563 -1.2169 -0.2572 10 6 4.1908 -1.8906 0.5591 11 8 5.3821 -1.9025 0.3324 12 6 3.6436 -2.6280 1.7539 13 1 3.0728 -1.9439 2.3818 14 8 4.7202 -3.1987 2.5091 15 6 4.5765 -4.6333 2.5583 16 6 3.0743 -4.8797 2.3258 17 1 2.5238 -4.6891 3.2471 18 6 2.7839 -6.2809 1.8450 19 8 3.3198 -6.5160 0.5436 20 6 2.7807 -5.6256 -0.4407 21 6 3.2361 -4.2073 -0.1038 22 6 2.7343 -3.7949 1.2828 23 1 1.6770 -3.5299 1.2877 24 6 3.8627 -0.5341 -1.3623 25 6 2.9930 -0.0704 -2.3435 26 6 3.5089 0.6052 -3.4354 27 6 4.8823 0.7941 -3.5089 28 6 5.6871 0.3063 -2.4975 29 7 5.1665 -0.3289 -1.4657 30 1 -0.4850 0.8401 0.0004 31 1 4.8772 -5.0111 3.5356 32 1 5.1654 -5.1028 1.7704 33 1 3.2218 -6.9940 2.5435 34 1 1.7046 -6.4299 1.8157 35 1 3.1473 -5.9044 -1.4286 36 1 1.6919 -5.6755 -0.4246 37 1 2.8414 -3.5166 -0.8489 38 1 4.3253 -4.1667 -0.1185 39 1 1.9294 -0.2354 -2.2545 40 1 2.8581 0.9765 -4.2132 41 1 5.3170 1.3169 -4.3479 42 1 6.7561 0.4505 -2.5506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121224779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:38 Heat of formation + Delta-G solvation = -52.069691 kcal Electronic energy + Delta-G solvation = -28783.450223 eV Core-core repulsion = 24923.013586 eV Total energy + Delta-G solvation = -3860.436637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98683 -39.79698 -38.09287 -37.03185 -35.20019 -32.87533 -32.40435 -31.72427 -31.51972 -29.78491 -28.17784 -25.44860 -25.29102 -23.66028 -23.22709 -22.55751 -21.65564 -19.39346 -19.13584 -18.34438 -16.96410 -16.35672 -15.99829 -15.97605 -15.71666 -15.42497 -15.06541 -14.88599 -14.59418 -14.33754 -13.94717 -13.67282 -13.42916 -13.22730 -12.89505 -12.77545 -12.48484 -12.41548 -12.25270 -11.79678 -11.67460 -11.53577 -11.32541 -11.01019 -10.87318 -10.67202 -10.36475 -10.18631 -10.07782 -9.76566 -9.59684 -9.32008 -9.26642 -8.94940 -8.77186 -8.13017 -7.35930 -6.71792 -4.55492 1.80607 2.01750 3.02489 3.14276 3.26644 3.51575 3.73342 3.99156 4.00671 4.29521 4.46784 4.52455 4.86832 4.89837 4.98753 5.15884 5.18650 5.27088 5.41797 5.46488 5.48454 5.61612 5.65175 5.67727 5.74363 5.76503 5.89346 5.91476 5.94490 6.03494 6.08774 6.16930 6.23992 6.43256 6.49298 6.60835 6.67600 6.87900 7.09105 7.22233 7.24817 7.46297 7.82749 8.01003 8.53334 8.76442 9.06667 9.47045 10.32509 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.005819 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.349403 B = 4810.815073 C = 5285.577150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.089 3.911 3 Si 0.854 3.146 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.372 4.372 8 H 0.121 0.879 9 N -0.406 5.406 10 C 0.492 3.508 11 O -0.500 6.500 12 C 0.083 3.917 13 H 0.109 0.891 14 O -0.359 6.359 15 C 0.060 3.940 16 C -0.160 4.160 17 H 0.093 0.907 18 C 0.075 3.925 19 O -0.379 6.379 20 C 0.063 3.937 21 C -0.163 4.163 22 C -0.091 4.091 23 H 0.116 0.884 24 C 0.357 3.643 25 C -0.197 4.197 26 C -0.062 4.062 27 C -0.235 4.235 28 C 0.118 3.882 29 N -0.489 5.489 30 H 0.280 0.720 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -6.368 -0.503 6.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.122 4.122 3 Si 0.679 3.321 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.138 0.862 9 N -0.122 5.122 10 C 0.280 3.720 11 O -0.374 6.374 12 C 0.022 3.978 13 H 0.126 0.874 14 O -0.277 6.277 15 C -0.017 4.017 16 C -0.179 4.179 17 H 0.111 0.889 18 C -0.002 4.002 19 O -0.298 6.298 20 C -0.014 4.014 21 C -0.200 4.200 22 C -0.110 4.110 23 H 0.134 0.866 24 C 0.128 3.872 25 C -0.221 4.221 26 C -0.088 4.088 27 C -0.257 4.257 28 C -0.041 4.041 29 N -0.205 5.205 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.168 0.832 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.160 -6.699 0.241 7.043 hybrid contribution -0.782 1.641 -0.702 1.949 sum 1.378 -5.058 -0.461 5.262 Atomic orbital electron populations 1.69662 1.06017 1.28810 1.43643 1.25402 0.95158 0.98558 0.93122 0.87151 0.81365 0.83475 0.80080 1.18025 1.20795 1.18324 1.19243 0.80310 0.96446 1.53760 0.86159 1.41590 1.08048 1.43880 1.18676 1.20988 0.86324 0.80975 0.83710 1.90684 1.15083 1.60359 1.71225 1.22645 0.87234 0.95526 0.92345 0.87377 1.88604 1.48252 1.18897 1.71986 1.23272 0.94557 0.82323 1.01498 1.22754 0.98178 0.96747 1.00229 0.88895 1.21809 0.98383 0.94740 0.85256 1.88089 1.67537 1.57030 1.17125 1.22593 0.97834 0.88993 0.91956 1.22385 1.02531 0.97693 0.97427 1.22579 1.01231 0.92579 0.94566 0.86621 1.19123 0.88393 0.92162 0.87569 1.21773 1.02519 1.03227 0.94569 1.21264 0.95037 0.95741 0.96794 1.21791 0.94622 1.07239 1.02028 1.22479 0.99677 0.92828 0.89146 1.67674 1.12277 1.16188 1.24381 0.90902 0.89913 0.91598 0.88977 0.92840 0.88973 0.92658 0.88962 0.90626 0.83227 0.85735 0.86055 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.07 13.96 55.49 0.77 -20.30 16 2 C 0.09 2.15 4.14 -17.49 -0.07 2.08 16 3 Si 0.85 20.19 24.54 -169.99 -4.17 16.02 16 4 H -0.26 -5.86 6.21 56.52 0.35 -5.51 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.75 7.09 56.52 0.40 -6.35 16 7 C -0.37 -8.72 7.10 -14.90 -0.11 -8.83 16 8 H 0.12 2.77 5.02 -52.49 -0.26 2.51 16 9 N -0.41 -9.64 1.63 -60.71 -0.10 -9.74 16 10 C 0.49 11.65 4.85 -10.99 -0.05 11.59 16 11 O -0.50 -13.27 14.67 -14.05 -0.21 -13.48 16 12 C 0.08 1.67 3.00 -26.69 -0.08 1.59 16 13 H 0.11 2.17 7.99 -51.93 -0.41 1.75 16 14 O -0.36 -7.17 10.61 -54.85 -0.58 -7.75 16 15 C 0.06 0.93 6.79 37.67 0.26 1.18 16 16 C -0.16 -2.18 3.02 -90.46 -0.27 -2.46 16 17 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.08 0.90 6.17 36.13 0.22 1.13 16 19 O -0.38 -5.50 10.58 -35.23 -0.37 -5.87 16 20 C 0.06 0.90 6.82 37.01 0.25 1.15 16 21 C -0.16 -2.82 3.85 -26.81 -0.10 -2.92 16 22 C -0.09 -1.51 2.48 -88.69 -0.22 -1.73 16 23 H 0.12 1.91 6.63 -51.93 -0.34 1.57 16 24 C 0.36 8.47 5.14 -154.64 -0.79 7.68 16 25 C -0.20 -4.26 6.09 -39.22 -0.24 -4.49 16 26 C -0.06 -1.14 9.98 -39.31 -0.39 -1.53 16 27 C -0.23 -4.03 10.11 -39.40 -0.40 -4.43 16 28 C 0.12 2.29 11.18 -17.57 -0.20 2.09 16 29 N -0.49 -11.64 8.00 -12.34 -0.10 -11.74 16 30 H 0.28 6.60 8.31 -40.82 -0.34 6.27 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.09 7.49 -51.93 -0.39 0.71 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 37 H 0.09 1.78 6.20 -51.93 -0.32 1.45 16 38 H 0.08 1.52 6.37 -51.93 -0.33 1.19 16 39 H 0.15 3.33 6.01 -52.49 -0.32 3.02 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.15 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -30.38 322.09 -7.47 -37.85 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.37 Total: 8.06 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.20 Total: 2.10 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.58 Total: -41.78 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.16 Total: -27.10 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.02 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.38 -7.47 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121224779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.219 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds