Wall clock time and date at job start Tue Mar 31 2020 12:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48505 * 109.47253 * 275.25362 * 3 2 1 5 5 H 1.48495 * 109.47179 * 35.25249 * 3 2 1 6 6 H 1.48503 * 109.47044 * 155.25626 * 3 2 1 7 7 C 1.38896 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00108 * 347.52690 * 7 2 1 9 9 N 1.37214 * 120.00058 * 167.52550 * 7 2 1 10 10 C 1.34785 * 119.99808 * 131.01820 * 9 7 2 11 11 O 1.21269 * 119.99456 * 180.02562 * 10 9 7 12 12 C 1.50692 * 119.99792 * 359.97438 * 10 9 7 13 13 H 1.08997 * 109.86545 * 304.29728 * 12 10 9 14 14 O 1.43356 * 109.86367 * 183.32789 * 12 10 9 15 15 C 1.44259 * 109.82248 * 240.57847 * 14 12 10 16 16 C 1.53990 * 104.54372 * 336.26508 * 15 14 12 17 17 H 1.09002 * 109.69837 * 281.35319 * 16 15 14 18 18 C 1.50959 * 112.59682 * 159.09424 * 16 15 14 19 19 O 1.42683 * 111.79188 * 293.72530 * 18 16 15 20 20 C 1.43255 * 112.51558 * 299.91680 * 19 18 16 21 21 C 1.52722 * 108.26453 * 65.61131 * 20 19 18 22 22 C 1.53120 * 110.61944 * 299.80820 * 21 20 19 23 23 H 1.09001 * 112.79685 * 283.33408 * 22 21 20 24 24 C 1.39421 * 120.00359 * 311.02272 * 9 7 2 25 25 C 1.39071 * 119.69415 * 347.14448 * 24 9 7 26 26 C 1.38380 * 119.09896 * 180.02562 * 25 24 9 27 27 C 1.38830 * 118.49338 * 0.02562 * 26 25 24 28 28 C 1.38148 * 119.30653 * 359.97438 * 27 26 25 29 29 N 1.31877 * 120.85663 * 359.72823 * 28 27 26 30 30 H 0.97010 * 119.99924 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.35209 * 217.52733 * 15 14 12 32 32 H 1.09002 * 110.47949 * 95.06387 * 15 14 12 33 33 H 1.09005 * 109.01527 * 54.31494 * 18 16 15 34 34 H 1.08997 * 109.01948 * 173.19999 * 18 16 15 35 35 H 1.09002 * 109.70519 * 185.30591 * 20 19 18 36 36 H 1.09004 * 109.70839 * 305.91827 * 20 19 18 37 37 H 1.09000 * 109.24664 * 179.51432 * 21 20 19 38 38 H 1.09003 * 109.24477 * 60.10432 * 21 20 19 39 39 H 1.07997 * 120.45131 * 0.02562 * 25 24 9 40 40 H 1.07997 * 120.75857 * 179.97438 * 26 25 24 41 41 H 1.07991 * 120.34699 * 179.97438 * 27 26 25 42 42 H 1.08005 * 119.56706 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3846 2.1105 -1.3942 5 1 1.5055 2.6181 0.8081 6 1 3.5968 1.4106 0.5860 7 6 2.0085 -1.2029 -0.0005 8 1 1.4876 -2.1272 0.2010 9 7 3.3563 -1.2169 -0.2572 10 6 4.1908 -1.8906 0.5591 11 8 5.3821 -1.9025 0.3324 12 6 3.6436 -2.6280 1.7539 13 1 3.0728 -1.9439 2.3818 14 8 4.7202 -3.1987 2.5091 15 6 4.5765 -4.6333 2.5583 16 6 3.0743 -4.8797 2.3258 17 1 2.5238 -4.6891 3.2471 18 6 2.7839 -6.2809 1.8450 19 8 3.3198 -6.5160 0.5436 20 6 2.7807 -5.6256 -0.4407 21 6 3.2361 -4.2073 -0.1038 22 6 2.7343 -3.7949 1.2828 23 1 1.6770 -3.5299 1.2877 24 6 3.8627 -0.5341 -1.3623 25 6 2.9930 -0.0704 -2.3435 26 6 3.5089 0.6052 -3.4354 27 6 4.8823 0.7941 -3.5089 28 6 5.6871 0.3063 -2.4975 29 7 5.1665 -0.3289 -1.4657 30 1 -0.4850 0.8401 0.0004 31 1 4.8772 -5.0111 3.5356 32 1 5.1654 -5.1028 1.7704 33 1 3.2218 -6.9940 2.5435 34 1 1.7046 -6.4299 1.8157 35 1 3.1473 -5.9044 -1.4286 36 1 1.6919 -5.6755 -0.4246 37 1 2.8414 -3.5166 -0.8489 38 1 4.3253 -4.1667 -0.1185 39 1 1.9294 -0.2354 -2.2545 40 1 2.8581 0.9765 -4.2132 41 1 5.3170 1.3169 -4.3479 42 1 6.7561 0.4505 -2.5506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121224779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:38 Heat of formation + Delta-G solvation = -71.909373 kcal Electronic energy + Delta-G solvation = -28784.310536 eV Core-core repulsion = 24923.013586 eV Total energy + Delta-G solvation = -3861.296950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48873 -41.30083 -39.60999 -38.42110 -37.01514 -34.33197 -34.13632 -33.20679 -32.87117 -31.32551 -29.62410 -27.25941 -26.42855 -25.17341 -24.49503 -24.12084 -23.18458 -20.92541 -20.65223 -19.94952 -18.43828 -17.87172 -17.58449 -17.40271 -17.10102 -16.92917 -16.51349 -16.22171 -16.02488 -15.92154 -15.61661 -15.26005 -14.92025 -14.70199 -14.46764 -14.39810 -14.03898 -13.88367 -13.66500 -13.24655 -13.08137 -12.97485 -12.91544 -12.58809 -12.56528 -12.08929 -12.04275 -11.65326 -11.47292 -11.18690 -11.13945 -10.93715 -10.64711 -10.49171 -10.45489 -9.82293 -9.07507 -8.60549 -6.42472 0.21254 0.46128 1.12934 1.21335 1.33443 1.79434 2.05767 2.14710 2.69418 2.90975 2.97078 3.15216 3.28270 3.50966 3.64012 3.79429 3.97330 4.04347 4.05363 4.11745 4.21640 4.29096 4.36905 4.38494 4.44182 4.53301 4.54374 4.65043 4.68915 4.70695 4.83100 4.84765 4.94773 5.01410 5.11611 5.14254 5.23266 5.33516 5.42728 5.79256 5.87250 6.01639 6.16993 6.22803 6.75789 7.00755 7.29797 7.72126 8.46171 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.005819 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.349403 B = 4810.815073 C = 5285.577150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.243 1.243 5 H -0.278 1.278 6 H -0.301 1.301 7 C -0.360 4.360 8 H 0.122 0.878 9 N -0.414 5.414 10 C 0.483 3.517 11 O -0.543 6.543 12 C 0.082 3.918 13 H 0.103 0.897 14 O -0.386 6.386 15 C 0.053 3.947 16 C -0.146 4.146 17 H 0.119 0.881 18 C 0.071 3.929 19 O -0.391 6.391 20 C 0.070 3.930 21 C -0.152 4.152 22 C -0.085 4.085 23 H 0.119 0.881 24 C 0.325 3.675 25 C -0.213 4.213 26 C -0.060 4.060 27 C -0.209 4.209 28 C 0.100 3.900 29 N -0.532 5.532 30 H 0.285 0.715 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -6.879 -1.361 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.167 1.167 5 H -0.204 1.204 6 H -0.227 1.227 7 C -0.486 4.486 8 H 0.139 0.861 9 N -0.130 5.130 10 C 0.273 3.727 11 O -0.420 6.420 12 C 0.021 3.979 13 H 0.120 0.880 14 O -0.304 6.304 15 C -0.023 4.023 16 C -0.165 4.165 17 H 0.137 0.863 18 C -0.005 4.005 19 O -0.310 6.310 20 C -0.007 4.007 21 C -0.190 4.190 22 C -0.104 4.104 23 H 0.137 0.863 24 C 0.097 3.903 25 C -0.236 4.236 26 C -0.086 4.086 27 C -0.231 4.231 28 C -0.058 4.058 29 N -0.248 5.248 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.066 0.934 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.156 0.844 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.391 -7.194 -0.643 7.356 hybrid contribution -0.386 1.842 -0.535 1.957 sum 1.005 -5.352 -1.179 5.572 Atomic orbital electron populations 1.69661 1.06178 1.29281 1.45171 1.25552 0.95300 0.99197 0.93480 0.86706 0.78562 0.83026 0.80268 1.16693 1.20378 1.22728 1.19260 0.80309 0.96361 1.52707 0.86090 1.41672 1.07967 1.44134 1.19251 1.21656 0.85969 0.80724 0.84375 1.90624 1.16656 1.62101 1.72614 1.22642 0.87741 0.96573 0.90900 0.87960 1.88570 1.48657 1.21547 1.71649 1.23528 0.96005 0.79999 1.02729 1.22779 0.96722 0.96837 1.00149 0.86297 1.22083 1.00022 0.93917 0.84524 1.88083 1.68144 1.56634 1.18161 1.22548 0.98839 0.86831 0.92454 1.22204 1.00011 0.99410 0.97328 1.22559 1.00384 0.92404 0.95015 0.86276 1.19366 0.89040 0.93442 0.88501 1.21811 1.01702 1.04490 0.95597 1.21802 0.96327 0.94162 0.96293 1.22299 0.93891 1.04820 1.02041 1.23136 1.01520 0.92301 0.88831 1.67608 1.12778 1.17688 1.26729 0.90434 0.86579 0.93391 0.86089 0.90574 0.88385 0.90703 0.91604 0.94174 0.84401 0.81759 0.81026 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.11 13.96 21.65 0.30 -42.80 16 2 C 0.07 3.62 4.14 84.91 0.35 3.97 16 3 Si 0.89 42.19 24.54 68.60 1.68 43.87 16 4 H -0.24 -10.85 6.21 99.48 0.62 -10.23 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.30 -16.35 7.09 99.48 0.70 -15.65 16 7 C -0.36 -17.40 7.10 84.01 0.60 -16.81 16 8 H 0.12 5.72 5.02 -2.91 -0.01 5.71 16 9 N -0.41 -20.52 1.63 -464.38 -0.76 -21.28 16 10 C 0.48 24.18 4.85 87.65 0.42 24.60 16 11 O -0.54 -30.69 14.67 15.77 0.23 -30.46 16 12 C 0.08 3.43 3.00 30.62 0.09 3.53 16 13 H 0.10 4.29 7.99 -2.39 -0.02 4.27 16 14 O -0.39 -15.84 10.61 -130.22 -1.38 -17.22 16 15 C 0.05 1.61 6.79 72.32 0.49 2.10 16 16 C -0.15 -3.71 3.02 -10.69 -0.03 -3.74 16 17 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 18 C 0.07 1.48 6.17 71.32 0.44 1.92 16 19 O -0.39 -10.63 10.58 -148.98 -1.58 -12.20 16 20 C 0.07 1.94 6.82 71.89 0.49 2.43 16 21 C -0.15 -5.42 3.85 30.54 0.12 -5.30 16 22 C -0.09 -2.83 2.48 -9.54 -0.02 -2.86 16 23 H 0.12 3.89 6.63 -2.39 -0.02 3.88 16 24 C 0.32 15.83 5.14 132.91 0.68 16.51 16 25 C -0.21 -9.12 6.09 22.50 0.14 -8.98 16 26 C -0.06 -2.03 9.98 22.45 0.22 -1.81 16 27 C -0.21 -6.47 10.11 22.39 0.23 -6.24 16 28 C 0.10 3.78 11.18 84.66 0.95 4.72 16 29 N -0.53 -25.91 8.00 -192.95 -1.54 -27.46 16 30 H 0.29 13.33 8.31 -92.70 -0.77 12.56 16 31 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.05 1.62 7.49 -2.39 -0.02 1.60 16 33 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 1.80 8.11 -2.38 -0.02 1.78 16 37 H 0.07 2.67 6.20 -2.39 -0.01 2.66 16 38 H 0.04 1.70 6.37 -2.39 -0.02 1.69 16 39 H 0.14 6.18 6.01 -2.91 -0.02 6.16 16 40 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.17 3.60 8.06 -2.92 -0.02 3.58 16 42 H 0.17 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -70.42 322.09 3.08 -67.34 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.96 Total: 26.17 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.16 Total: 14.05 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.00 Total: -91.54 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -2.73 Total: -59.89 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.87 kcal Total: -70.42 3.08 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121224779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.571 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds