Wall clock time and date at job start Tue Mar 31 2020 13:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35346 * 126.38180 * 2 1 4 4 C 1.41545 * 105.50531 * 179.97438 * 3 2 1 5 5 C 1.47587 * 126.52356 * 180.12677 * 4 3 2 6 6 O 1.21482 * 119.99994 * 0.23575 * 5 4 3 7 7 O 1.34733 * 119.99829 * 180.23231 * 5 4 3 8 8 C 1.45193 * 117.00131 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.47175 * 30.00123 * 8 7 5 10 10 C 1.50701 * 109.47378 * 149.99750 * 8 7 5 11 11 H 1.07998 * 119.99537 * 115.55005 * 10 8 7 12 12 C 1.37867 * 120.00146 * 295.55094 * 10 8 7 13 13 N 1.31516 * 120.00090 * 173.42022 * 12 10 8 14 14 Si 1.86801 * 120.00180 * 353.42346 * 12 10 8 15 15 H 1.48495 * 109.47275 * 85.52284 * 14 12 10 16 16 H 1.48500 * 109.47033 * 205.52548 * 14 12 10 17 17 H 1.48505 * 109.47021 * 325.52263 * 14 12 10 18 18 C 1.50702 * 109.47273 * 270.00315 * 8 7 5 19 19 C 1.34517 * 125.79108 * 144.65089 * 18 8 7 20 20 C 1.41376 * 106.84094 * 179.88805 * 19 18 8 21 21 C 1.34511 * 106.84168 * 0.37170 * 20 19 18 22 22 O 1.34301 * 125.78947 * 324.96035 * 18 8 7 23 23 N 1.31859 * 106.95013 * 0.34516 * 4 3 2 24 24 N 1.28462 * 110.06252 * 359.78631 * 23 4 3 25 25 C 1.46503 * 124.87927 * 180.02562 * 24 23 4 26 26 C 1.53003 * 109.47115 * 299.99683 * 25 24 23 27 27 C 1.53005 * 109.46859 * 59.99292 * 25 24 23 28 28 H 1.09001 * 109.46799 * 269.68655 * 1 2 3 29 29 H 1.09001 * 109.47126 * 149.69184 * 1 2 3 30 30 H 1.08999 * 109.47226 * 29.69095 * 1 2 3 31 31 H 1.08002 * 127.24607 * 0.02562 * 3 2 1 32 32 H 0.97002 * 120.00296 * 180.02562 * 13 12 10 33 33 H 1.08005 * 126.57603 * 0.02824 * 19 18 8 34 34 H 1.08001 * 126.58250 * 180.16416 * 20 19 18 35 35 H 1.08002 * 125.79576 * 179.74952 * 21 20 19 36 36 H 1.08995 * 109.47136 * 179.97438 * 25 24 23 37 37 H 1.08988 * 109.47001 * 179.97438 * 26 25 24 38 38 H 1.08999 * 109.46743 * 299.99942 * 26 25 24 39 39 H 1.09000 * 109.46927 * 59.99458 * 26 25 24 40 40 H 1.08997 * 109.46674 * 60.00628 * 27 25 24 41 41 H 1.09000 * 109.46531 * 180.02562 * 27 25 24 42 42 H 1.08993 * 109.47432 * 300.00283 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0896 0.0000 4 6 3.6323 0.5852 0.0006 5 6 4.8757 1.3804 0.0035 6 8 4.8205 2.5939 0.0099 7 8 6.0718 0.7603 -0.0010 8 6 7.2524 1.6055 0.0028 9 1 7.0303 2.5378 0.5221 10 6 8.3777 0.8934 0.7083 11 1 9.2673 0.6158 0.1625 12 6 8.2716 0.5965 2.0504 13 7 9.1927 -0.1367 2.6366 14 14 6.8193 1.2355 3.0364 15 1 5.6752 0.2993 2.8958 16 1 7.2005 1.3399 4.4679 17 1 6.4279 2.5753 2.5294 18 6 7.6597 1.9059 -1.4167 19 6 8.1874 3.0628 -1.8557 20 6 8.4186 2.9077 -3.2417 21 6 8.0108 1.6683 -3.5686 22 8 7.5520 1.0661 -2.4592 23 7 3.5420 -0.7302 -0.0067 24 7 2.3080 -1.0873 -0.0072 25 6 1.8373 -2.4746 -0.0139 26 6 2.3550 -3.1828 -1.2674 27 6 2.3580 -3.1958 1.2311 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8927 -0.5090 31 1 2.0054 2.1259 0.0004 32 1 9.1179 -0.3460 3.5808 33 1 8.3966 3.9408 -1.2625 34 1 8.8387 3.6443 -3.9106 35 1 8.0458 1.2315 -4.5557 36 1 0.7474 -2.4885 -0.0123 37 1 2.0052 -4.2150 -1.2722 38 1 1.9841 -2.6690 -2.1543 39 1 3.4449 -3.1688 -1.2686 40 1 1.9891 -2.6913 2.1240 41 1 2.0081 -4.2281 1.2258 42 1 3.4478 -3.1819 1.2299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:18 Heat of formation + Delta-G solvation = -13.879836 kcal Electronic energy + Delta-G solvation = -27065.702069 eV Core-core repulsion = 23206.921469 eV Total energy + Delta-G solvation = -3858.780600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -43.85628 -43.45953 -41.12853 -37.67624 -36.73901 -35.16246 -33.95945 -33.79125 -32.45447 -31.57754 -28.97580 -28.30493 -27.98361 -26.39574 -24.62624 -22.82662 -22.59375 -22.16639 -21.32485 -20.45430 -19.57927 -18.60046 -18.16000 -18.09319 -17.43075 -17.14174 -16.77114 -16.64478 -16.22583 -15.82566 -15.34453 -14.83612 -14.70928 -14.26280 -14.17223 -14.03329 -13.92234 -13.70526 -13.69511 -13.49374 -13.45211 -13.31827 -13.14456 -12.94089 -12.90714 -12.40239 -12.24629 -12.17519 -12.02047 -11.87549 -11.70626 -11.60624 -11.09524 -10.81277 -10.26555 -9.98411 -9.36999 -8.65170 -6.78343 0.23446 0.81390 1.00707 1.13366 1.14644 1.24266 1.33879 1.70742 1.88910 2.02585 2.07299 2.24701 2.84113 3.25173 3.64491 3.69321 3.81699 3.87563 3.98230 4.04098 4.14792 4.22843 4.26932 4.46678 4.50214 4.60050 4.60779 4.73343 4.75308 4.79481 4.88378 4.95952 4.97321 5.02203 5.05437 5.16736 5.16771 5.20846 5.27759 5.48609 5.67559 5.88254 5.91983 6.26322 6.30485 6.64247 6.90807 6.95615 8.48248 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.005050 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.034495 B = 5543.746163 C = 6508.924536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 C -0.199 4.199 4 C -0.045 4.045 5 C 0.530 3.470 6 O -0.535 6.535 7 O -0.352 6.352 8 C 0.259 3.741 9 H 0.070 0.930 10 C -0.524 4.524 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.897 5.897 14 Si 0.914 3.086 15 H -0.274 1.274 16 H -0.254 1.254 17 H -0.259 1.259 18 C -0.023 4.023 19 C -0.222 4.222 20 C -0.211 4.211 21 C -0.058 4.058 22 O -0.194 6.194 23 N -0.258 5.258 24 N -0.266 5.266 25 C 0.131 3.869 26 C -0.161 4.161 27 C -0.164 4.164 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.172 0.828 32 H 0.282 0.718 33 H 0.154 0.846 34 H 0.185 0.815 35 H 0.245 0.755 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.183 -4.201 -7.721 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 C -0.226 4.226 4 C -0.200 4.200 5 C 0.374 3.626 6 O -0.425 6.425 7 O -0.267 6.267 8 C 0.207 3.793 9 H 0.087 0.913 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.737 3.263 15 H -0.199 1.199 16 H -0.179 1.179 17 H -0.183 1.183 18 C -0.074 4.074 19 C -0.241 4.241 20 C -0.230 4.230 21 C -0.125 4.125 22 O -0.090 6.090 23 N -0.096 5.096 24 N -0.058 5.058 25 C 0.033 3.967 26 C -0.219 4.219 27 C -0.221 4.221 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.189 0.811 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.202 0.798 35 H 0.261 0.739 36 H 0.175 0.825 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.540 -5.306 -7.533 22.512 hybrid contribution 0.174 1.286 0.655 1.454 sum -20.366 -4.020 -6.879 21.869 Atomic orbital electron populations 1.20602 0.82018 1.05970 1.05080 1.22170 0.97664 0.85025 1.04970 1.21755 0.88779 1.01328 1.10743 1.21013 0.92940 0.90760 1.15315 1.20470 0.84387 0.85870 0.71851 1.90706 1.88376 1.14963 1.48454 1.87137 1.14529 1.43615 1.81465 1.19413 0.80976 0.92385 0.86562 0.91297 1.20878 0.99691 1.41085 0.94336 0.92316 1.25536 0.97811 0.92871 0.98196 1.69945 1.35578 1.34604 1.13148 0.86215 0.80342 0.80203 0.79536 1.19918 1.17851 1.18292 1.22909 1.05025 0.90199 0.89220 1.21812 1.06814 0.98498 0.96986 1.22117 1.07216 0.98878 0.94794 1.24981 1.02164 0.94308 0.91037 1.84044 1.65768 1.42282 1.16943 1.73658 1.03910 1.14286 1.17718 1.46414 1.01700 1.09192 1.48506 1.22237 1.02080 0.74012 0.98374 1.22169 1.01589 1.02606 0.95509 1.22189 1.01467 1.02651 0.95834 0.88456 0.88247 0.88065 0.81057 0.90861 0.82873 0.79784 0.73930 0.82490 0.86664 0.91684 0.93994 0.92139 0.86521 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.92 71.23 0.71 -0.12 16 2 C 0.03 0.63 6.92 41.39 0.29 0.91 16 3 C -0.20 -6.55 10.73 22.42 0.24 -6.31 16 4 C -0.04 -1.95 7.17 42.42 0.30 -1.65 16 5 C 0.53 27.37 7.27 70.29 0.51 27.89 16 6 O -0.54 -28.34 16.18 19.89 0.32 -28.02 16 7 O -0.35 -19.93 8.55 -53.75 -0.46 -20.39 16 8 C 0.26 14.66 1.72 29.10 0.05 14.71 16 9 H 0.07 3.98 5.76 -2.38 -0.01 3.96 16 10 C -0.52 -32.62 9.31 25.60 0.24 -32.39 16 11 H 0.06 3.94 7.99 -2.91 -0.02 3.92 16 12 C 0.06 3.75 5.47 84.65 0.46 4.22 16 13 N -0.90 -55.70 13.96 21.44 0.30 -55.40 16 14 Si 0.91 48.18 26.01 68.60 1.78 49.96 16 15 H -0.27 -14.75 7.11 99.48 0.71 -14.04 16 16 H -0.25 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.26 -13.64 6.52 99.48 0.65 -12.99 16 18 C -0.02 -1.18 6.13 24.83 0.15 -1.03 16 19 C -0.22 -9.70 10.81 22.19 0.24 -9.46 16 20 C -0.21 -7.34 10.91 22.19 0.24 -7.10 16 21 C -0.06 -2.06 12.09 66.97 0.81 -1.25 16 22 O -0.19 -9.29 10.63 1.02 0.01 -9.28 16 23 N -0.26 -10.37 11.65 -48.21 -0.56 -10.94 16 24 N -0.27 -7.42 3.04 -314.19 -0.96 -8.38 16 25 C 0.13 2.24 3.55 44.99 0.16 2.40 16 26 C -0.16 -2.70 9.37 71.98 0.67 -2.02 16 27 C -0.16 -2.99 9.37 71.98 0.67 -2.31 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.50 7.03 -2.39 -0.02 0.48 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.17 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.15 6.19 8.06 -2.91 -0.02 6.16 16 34 H 0.18 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.24 5.61 8.06 -2.91 -0.02 5.58 16 36 H 0.16 1.16 6.55 -2.39 -0.02 1.14 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -87.49 364.46 7.16 -80.33 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.97 Total: 15.62 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 5.75 Total: -13.51 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.22 Total: -74.71 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.13 Total: -57.69 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.78 Total: 49.96 kcal Total: -87.49 7.16 -80.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.450 kcal (2) G-P(sol) polarization free energy of solvation -87.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds