Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35346 * 126.37478 * 2 1 4 4 C 1.41549 * 105.50072 * 179.97438 * 3 2 1 5 5 C 1.47578 * 126.52654 * 179.97438 * 4 3 2 6 6 O 1.21491 * 120.00106 * 0.02562 * 5 4 3 7 7 O 1.34727 * 120.00455 * 180.02562 * 5 4 3 8 8 C 1.45199 * 117.00703 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.46906 * 29.99568 * 8 7 5 10 10 C 1.50701 * 109.46844 * 270.00250 * 8 7 5 11 11 H 1.08006 * 120.00013 * 125.08569 * 10 8 7 12 12 C 1.37871 * 120.00231 * 305.08404 * 10 8 7 13 13 N 1.31516 * 119.99821 * 7.28036 * 12 10 8 14 14 Si 1.86804 * 120.00274 * 187.28264 * 12 10 8 15 15 H 1.48499 * 109.47083 * 84.98952 * 14 12 10 16 16 H 1.48494 * 109.47049 * 204.98953 * 14 12 10 17 17 H 1.48494 * 109.46989 * 324.99116 * 14 12 10 18 18 C 1.50695 * 109.47433 * 149.99849 * 8 7 5 19 19 C 1.34510 * 125.79081 * 213.44777 * 18 8 7 20 20 C 1.41380 * 106.84569 * 180.02562 * 19 18 8 21 21 C 1.34518 * 106.83470 * 359.97438 * 20 19 18 22 22 O 1.34302 * 125.78709 * 33.14637 * 18 8 7 23 23 N 1.31861 * 106.95046 * 0.02562 * 4 3 2 24 24 N 1.28470 * 110.06021 * 359.71370 * 23 4 3 25 25 C 1.46505 * 124.87685 * 180.29302 * 24 23 4 26 26 C 1.52997 * 109.47074 * 300.19403 * 25 24 23 27 27 C 1.53001 * 109.46800 * 60.19569 * 25 24 23 28 28 H 1.08997 * 109.46712 * 90.02500 * 1 2 3 29 29 H 1.09000 * 109.46979 * 330.02685 * 1 2 3 30 30 H 1.09003 * 109.46903 * 210.02757 * 1 2 3 31 31 H 1.07997 * 127.25394 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00174 * 180.02562 * 13 12 10 33 33 H 1.08008 * 126.58143 * 0.03758 * 19 18 8 34 34 H 1.07997 * 126.58767 * 179.97438 * 20 19 18 35 35 H 1.08000 * 125.78619 * 180.02562 * 21 20 19 36 36 H 1.08993 * 109.46936 * 180.19873 * 25 24 23 37 37 H 1.08999 * 109.47396 * 60.00004 * 26 25 24 38 38 H 1.09003 * 109.47252 * 179.97438 * 26 25 24 39 39 H 1.09003 * 109.47557 * 300.00102 * 26 25 24 40 40 H 1.08993 * 109.47148 * 60.00035 * 27 25 24 41 41 H 1.09003 * 109.46833 * 180.02562 * 27 25 24 42 42 H 1.08999 * 109.47014 * 299.99594 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5854 0.0006 5 6 4.8756 1.3805 0.0003 6 8 4.8205 2.5941 -0.0001 7 8 6.0718 0.7605 0.0005 8 6 7.2524 1.6057 0.0007 9 1 7.0297 2.5409 0.5146 10 6 7.6611 1.8983 -1.4200 11 1 7.7741 2.9205 -1.7498 12 6 7.8906 0.8610 -2.2988 13 7 7.6161 -0.3750 -1.9432 14 14 8.5915 1.2113 -3.9946 15 1 10.0726 1.2818 -3.9131 16 1 8.1982 0.1245 -4.9269 17 1 8.0610 2.5061 -4.4917 18 6 8.3770 0.8976 0.7113 19 6 9.3339 1.4858 1.4514 20 6 10.1766 0.4546 1.9260 21 6 9.6838 -0.7022 1.4480 22 8 8.5905 -0.4283 0.7176 23 7 3.5421 -0.7301 0.0004 24 7 2.3080 -1.0872 0.0057 25 6 1.8374 -2.4746 0.0133 26 6 2.3567 -3.1961 -1.2319 27 6 2.3564 -3.1823 1.2665 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 2.0053 2.1259 -0.0004 32 1 7.7780 -1.1049 -2.5613 33 1 9.4384 2.5431 1.6459 34 1 11.0485 0.5728 2.5522 35 1 10.0949 -1.6850 1.6254 36 1 0.7475 -2.4885 0.0131 37 1 3.4466 -3.1822 -1.2319 38 1 2.0070 -4.2284 -1.2261 39 1 1.9871 -2.6919 -2.1248 40 1 1.9863 -2.6682 2.1536 41 1 2.0065 -4.2146 1.2720 42 1 3.4463 -3.1684 1.2666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123462245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = 10.341679 kcal Electronic energy + Delta-G solvation = -27069.908290 eV Core-core repulsion = 23212.178014 eV Total energy + Delta-G solvation = -3857.730277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40477 -41.32126 -38.75215 -35.76844 -35.15124 -32.85845 -32.54160 -31.83597 -30.41169 -29.71606 -27.42241 -26.92484 -26.47517 -24.65129 -22.86064 -21.39586 -20.71882 -20.37167 -19.43784 -18.76222 -16.95136 -16.83203 -16.34067 -15.96076 -15.80004 -15.03419 -14.84274 -14.79543 -14.46632 -14.15354 -13.69180 -13.33112 -13.28768 -13.13566 -12.81898 -12.64730 -12.42125 -12.26283 -11.96955 -11.84628 -11.75071 -11.54685 -11.47202 -11.30090 -11.26591 -10.94796 -10.92595 -10.28345 -10.26760 -9.75080 -9.56320 -9.02733 -8.82670 -8.75766 -8.61733 -8.59302 -7.32349 -6.11354 -4.32673 2.07985 2.40975 2.61315 2.91656 3.26879 3.32509 3.36479 3.61327 3.94190 4.13533 4.26460 4.34477 4.36883 4.69073 4.73536 4.81436 4.99075 5.16510 5.25002 5.38687 5.41046 5.45323 5.59029 5.63764 5.72351 5.78531 5.89231 5.94562 6.01226 6.06306 6.13786 6.18213 6.39847 6.55334 6.76554 6.82533 6.93661 7.09087 7.23275 7.50368 7.71770 7.82661 7.90278 8.31454 8.41570 8.68693 9.13525 9.40252 10.87398 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.004436 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.937419 B = 6310.345013 C = 6730.684593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.006 4.006 3 C -0.181 4.181 4 C 0.012 3.988 5 C 0.547 3.453 6 O -0.525 6.525 7 O -0.307 6.307 8 C 0.278 3.722 9 H 0.072 0.928 10 C -0.553 4.553 11 H 0.075 0.925 12 C 0.081 3.919 13 N -0.817 5.817 14 Si 0.893 3.107 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.080 3.920 19 C -0.263 4.263 20 C -0.218 4.218 21 C -0.083 4.083 22 O -0.128 6.128 23 N -0.218 5.218 24 N -0.281 5.281 25 C 0.145 3.855 26 C -0.164 4.164 27 C -0.164 4.164 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.265 0.735 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.184 0.816 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -6.724 5.131 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C -0.208 4.208 4 C -0.147 4.147 5 C 0.390 3.610 6 O -0.415 6.415 7 O -0.220 6.220 8 C 0.225 3.775 9 H 0.089 0.911 10 C -0.588 4.588 11 H 0.093 0.907 12 C -0.130 4.130 13 N -0.449 5.449 14 Si 0.720 3.280 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.195 1.195 18 C 0.027 3.973 19 C -0.282 4.282 20 C -0.238 4.238 21 C -0.152 4.152 22 O -0.021 6.021 23 N -0.054 5.054 24 N -0.072 5.072 25 C 0.045 3.955 26 C -0.222 4.222 27 C -0.221 4.221 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.177 0.823 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.200 0.800 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.954 -7.901 4.939 15.156 hybrid contribution 0.371 0.962 -0.952 1.403 sum -11.583 -6.939 3.986 14.079 Atomic orbital electron populations 1.20286 0.87165 1.03359 1.02903 1.21303 0.95139 0.86983 1.09495 1.21458 0.90438 0.99355 1.09591 1.21190 0.93188 0.89590 1.10723 1.19451 0.83631 0.85086 0.72848 1.90726 1.88068 1.14392 1.48332 1.86887 1.13103 1.41817 1.80219 1.18841 0.76617 0.86380 0.95635 0.91063 1.21204 1.49996 0.93951 0.93684 0.90692 1.25148 0.93863 0.95029 0.98949 1.70138 1.40473 0.98721 1.35528 0.86576 0.79648 0.78393 0.83391 1.20109 1.20964 1.19456 1.23011 0.98945 0.80403 0.94981 1.21167 0.99945 0.99819 1.07263 1.21509 1.02838 0.92820 1.06595 1.23779 0.91778 0.99503 1.00107 1.84363 1.37723 1.25148 1.54821 1.73824 1.00361 1.14905 1.16263 1.45804 1.03076 1.06808 1.51470 1.21538 0.99203 0.76642 0.98142 1.22160 1.04139 1.00031 0.95877 1.22158 1.03966 1.00227 0.95791 0.90695 0.89816 0.91563 0.82323 0.92504 0.84745 0.85039 0.79951 0.87832 0.90100 0.90581 0.91963 0.92019 0.90527 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.93 36.01 0.36 -0.33 16 2 C -0.01 -0.09 6.92 -82.21 -0.57 -0.66 16 3 C -0.18 -3.16 10.73 -39.35 -0.42 -3.58 16 4 C 0.01 0.26 7.17 -82.78 -0.59 -0.34 16 5 C 0.55 13.91 7.93 34.54 0.27 14.18 16 6 O -0.53 -13.79 16.18 -19.26 -0.31 -14.10 16 7 O -0.31 -8.45 8.77 -43.62 -0.38 -8.84 16 8 C 0.28 7.55 2.58 -29.04 -0.08 7.47 16 9 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 10 C -0.55 -15.76 8.87 -34.44 -0.31 -16.06 16 11 H 0.07 2.11 7.82 -52.48 -0.41 1.70 16 12 C 0.08 2.29 5.23 -17.82 -0.09 2.19 16 13 N -0.82 -23.49 11.21 55.43 0.62 -22.87 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.08 2.06 5.74 -35.63 -0.20 1.85 16 19 C -0.26 -5.95 10.81 -39.70 -0.43 -6.38 16 20 C -0.22 -4.39 10.91 -39.70 -0.43 -4.83 16 21 C -0.08 -1.73 12.09 29.42 0.36 -1.37 16 22 O -0.13 -3.28 9.66 1.07 0.01 -3.27 16 23 N -0.22 -4.43 11.65 33.41 0.39 -4.04 16 24 N -0.28 -4.32 3.04 -50.66 -0.15 -4.48 16 25 C 0.15 1.58 3.55 -67.93 -0.24 1.34 16 26 C -0.16 -1.79 9.36 37.16 0.35 -1.44 16 27 C -0.16 -1.66 9.37 37.16 0.35 -1.31 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.44 7.01 -51.93 -0.36 0.08 16 31 H 0.16 2.50 8.06 -52.49 -0.42 2.07 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.13 2.75 8.06 -52.48 -0.42 2.33 16 34 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.18 2.97 8.06 -52.49 -0.42 2.55 16 36 H 0.10 0.78 6.54 -51.93 -0.34 0.44 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -34.88 366.77 -6.70 -41.58 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.69 Total: 3.24 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.68 Total: -9.27 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.86 Total: -31.39 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.68 Total: -26.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.88 -6.70 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.919 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds