Wall clock time and date at job start Tue Mar 31 2020 13:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35346 * 126.37478 * 2 1 4 4 C 1.41549 * 105.50072 * 179.97438 * 3 2 1 5 5 C 1.47578 * 126.52654 * 179.97438 * 4 3 2 6 6 O 1.21491 * 120.00106 * 0.02562 * 5 4 3 7 7 O 1.34727 * 120.00455 * 180.02562 * 5 4 3 8 8 C 1.45199 * 117.00703 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.46906 * 29.99568 * 8 7 5 10 10 C 1.50701 * 109.46844 * 270.00250 * 8 7 5 11 11 H 1.08006 * 120.00013 * 125.08569 * 10 8 7 12 12 C 1.37871 * 120.00231 * 305.08404 * 10 8 7 13 13 N 1.31516 * 119.99821 * 7.28036 * 12 10 8 14 14 Si 1.86804 * 120.00274 * 187.28264 * 12 10 8 15 15 H 1.48499 * 109.47083 * 84.98952 * 14 12 10 16 16 H 1.48494 * 109.47049 * 204.98953 * 14 12 10 17 17 H 1.48494 * 109.46989 * 324.99116 * 14 12 10 18 18 C 1.50695 * 109.47433 * 149.99849 * 8 7 5 19 19 C 1.34510 * 125.79081 * 213.44777 * 18 8 7 20 20 C 1.41380 * 106.84569 * 180.02562 * 19 18 8 21 21 C 1.34518 * 106.83470 * 359.97438 * 20 19 18 22 22 O 1.34302 * 125.78709 * 33.14637 * 18 8 7 23 23 N 1.31861 * 106.95046 * 0.02562 * 4 3 2 24 24 N 1.28470 * 110.06021 * 359.71370 * 23 4 3 25 25 C 1.46505 * 124.87685 * 180.29302 * 24 23 4 26 26 C 1.52997 * 109.47074 * 300.19403 * 25 24 23 27 27 C 1.53001 * 109.46800 * 60.19569 * 25 24 23 28 28 H 1.08997 * 109.46712 * 90.02500 * 1 2 3 29 29 H 1.09000 * 109.46979 * 330.02685 * 1 2 3 30 30 H 1.09003 * 109.46903 * 210.02757 * 1 2 3 31 31 H 1.07997 * 127.25394 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00174 * 180.02562 * 13 12 10 33 33 H 1.08008 * 126.58143 * 0.03758 * 19 18 8 34 34 H 1.07997 * 126.58767 * 179.97438 * 20 19 18 35 35 H 1.08000 * 125.78619 * 180.02562 * 21 20 19 36 36 H 1.08993 * 109.46936 * 180.19873 * 25 24 23 37 37 H 1.08999 * 109.47396 * 60.00004 * 26 25 24 38 38 H 1.09003 * 109.47252 * 179.97438 * 26 25 24 39 39 H 1.09003 * 109.47557 * 300.00102 * 26 25 24 40 40 H 1.08993 * 109.47148 * 60.00035 * 27 25 24 41 41 H 1.09003 * 109.46833 * 180.02562 * 27 25 24 42 42 H 1.08999 * 109.47014 * 299.99594 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5854 0.0006 5 6 4.8756 1.3805 0.0003 6 8 4.8205 2.5941 -0.0001 7 8 6.0718 0.7605 0.0005 8 6 7.2524 1.6057 0.0007 9 1 7.0297 2.5409 0.5146 10 6 7.6611 1.8983 -1.4200 11 1 7.7741 2.9205 -1.7498 12 6 7.8906 0.8610 -2.2988 13 7 7.6161 -0.3750 -1.9432 14 14 8.5915 1.2113 -3.9946 15 1 10.0726 1.2818 -3.9131 16 1 8.1982 0.1245 -4.9269 17 1 8.0610 2.5061 -4.4917 18 6 8.3770 0.8976 0.7113 19 6 9.3339 1.4858 1.4514 20 6 10.1766 0.4546 1.9260 21 6 9.6838 -0.7022 1.4480 22 8 8.5905 -0.4283 0.7176 23 7 3.5421 -0.7301 0.0004 24 7 2.3080 -1.0872 0.0057 25 6 1.8374 -2.4746 0.0133 26 6 2.3567 -3.1961 -1.2319 27 6 2.3564 -3.1823 1.2665 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 2.0053 2.1259 -0.0004 32 1 7.7780 -1.1049 -2.5613 33 1 9.4384 2.5431 1.6459 34 1 11.0485 0.5728 2.5522 35 1 10.0949 -1.6850 1.6254 36 1 0.7475 -2.4885 0.0131 37 1 3.4466 -3.1822 -1.2319 38 1 2.0070 -4.2284 -1.2261 39 1 1.9871 -2.6919 -2.1248 40 1 1.9863 -2.6682 2.1536 41 1 2.0065 -4.2146 1.2720 42 1 3.4463 -3.1684 1.2666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:27 Heat of formation + Delta-G solvation = -11.202346 kcal Electronic energy + Delta-G solvation = -27070.842509 eV Core-core repulsion = 23212.178014 eV Total energy + Delta-G solvation = -3858.664496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.72206 -43.12184 -40.73005 -37.33109 -36.63931 -34.90332 -33.69916 -33.62916 -31.95494 -31.36781 -28.46571 -28.26552 -27.88915 -26.32913 -24.69675 -22.66684 -22.36695 -21.85908 -21.26064 -20.30684 -18.87177 -18.40066 -17.95384 -17.60963 -17.19755 -16.90948 -16.64710 -16.36065 -16.02968 -15.76341 -15.12263 -14.70309 -14.57728 -14.09161 -14.08901 -13.69994 -13.63432 -13.59276 -13.43241 -13.39146 -13.12711 -13.11311 -12.95307 -12.86594 -12.83264 -12.35747 -12.23583 -12.14965 -11.87472 -11.66162 -11.51667 -11.07300 -10.74690 -10.55843 -10.12522 -9.87718 -9.12967 -8.22038 -6.52558 0.48253 1.11403 1.11597 1.33594 1.35736 1.44972 1.48106 1.89094 2.19518 2.31412 2.35387 2.52483 3.07423 3.35579 3.72620 3.80959 3.86724 4.02690 4.07479 4.25664 4.36198 4.41488 4.47312 4.59677 4.63427 4.64214 4.68087 4.76781 4.80134 4.83797 5.03477 5.08433 5.10150 5.19109 5.20655 5.25354 5.37659 5.40534 5.54195 5.75912 5.83016 5.89639 5.98656 6.48059 6.63120 6.89266 7.16167 7.27699 8.75752 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.004436 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.937419 B = 6310.345013 C = 6730.684593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.202 4.202 4 C -0.034 4.034 5 C 0.536 3.464 6 O -0.550 6.550 7 O -0.324 6.324 8 C 0.274 3.726 9 H 0.059 0.941 10 C -0.580 4.580 11 H 0.065 0.935 12 C 0.039 3.961 13 N -0.841 5.841 14 Si 0.957 3.043 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.269 1.269 18 C 0.035 3.965 19 C -0.258 4.258 20 C -0.213 4.213 21 C -0.083 4.083 22 O -0.162 6.162 23 N -0.253 5.253 24 N -0.270 5.270 25 C 0.133 3.867 26 C -0.161 4.161 27 C -0.160 4.160 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.265 0.735 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.227 0.773 36 H 0.155 0.845 37 H 0.038 0.962 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 -8.631 5.368 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.230 4.230 4 C -0.190 4.190 5 C 0.381 3.619 6 O -0.442 6.442 7 O -0.238 6.238 8 C 0.222 3.778 9 H 0.076 0.924 10 C -0.616 4.616 11 H 0.083 0.917 12 C -0.170 4.170 13 N -0.473 5.473 14 Si 0.781 3.219 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.193 1.193 18 C -0.017 4.017 19 C -0.277 4.277 20 C -0.231 4.231 21 C -0.151 4.151 22 O -0.056 6.056 23 N -0.090 5.090 24 N -0.062 5.062 25 C 0.034 3.966 26 C -0.219 4.219 27 C -0.217 4.217 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.185 0.815 32 H 0.074 0.926 33 H 0.167 0.833 34 H 0.193 0.807 35 H 0.243 0.757 36 H 0.172 0.828 37 H 0.057 0.943 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.679 -9.809 5.188 17.614 hybrid contribution 0.820 1.451 -0.911 1.900 sum -12.859 -8.358 4.277 15.922 Atomic orbital electron populations 1.20573 0.82272 1.05809 1.04896 1.22112 0.97534 0.85188 1.05412 1.21705 0.89077 1.01069 1.11116 1.20999 0.92915 0.90588 1.14466 1.20176 0.84293 0.85486 0.71971 1.90662 1.88462 1.15373 1.49696 1.86871 1.14003 1.42272 1.80611 1.18758 0.77153 0.86559 0.95378 0.92360 1.21381 1.51268 0.93791 0.95149 0.91731 1.25865 0.93920 0.94697 1.02474 1.70273 1.41118 0.99317 1.36635 0.85598 0.79190 0.78287 0.78870 1.19136 1.20046 1.19333 1.22846 0.99951 0.81119 0.97774 1.21576 0.99172 1.01241 1.05750 1.21939 1.03458 0.91338 1.06403 1.24760 0.90032 1.01881 0.98407 1.84298 1.39849 1.25139 1.56282 1.73720 1.03418 1.14365 1.17512 1.46372 1.01843 1.08958 1.48979 1.22169 1.01887 0.74229 0.98275 1.22155 1.01428 1.02466 0.95820 1.22155 1.01523 1.02524 0.95543 0.88683 0.88201 0.88343 0.81493 0.92571 0.83264 0.80718 0.75664 0.82760 0.94279 0.86658 0.92356 0.91747 0.86735 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.93 71.24 0.71 -0.28 16 2 C 0.02 0.58 6.92 41.40 0.29 0.86 16 3 C -0.20 -7.21 10.73 22.42 0.24 -6.97 16 4 C -0.03 -1.55 7.17 42.42 0.30 -1.25 16 5 C 0.54 29.52 7.93 70.29 0.56 30.08 16 6 O -0.55 -31.29 16.18 19.86 0.32 -30.97 16 7 O -0.32 -19.28 8.77 -53.45 -0.47 -19.75 16 8 C 0.27 15.98 2.58 29.10 0.08 16.06 16 9 H 0.06 3.38 7.16 -2.39 -0.02 3.36 16 10 C -0.58 -35.03 8.87 25.60 0.23 -34.81 16 11 H 0.06 3.87 7.82 -2.91 -0.02 3.85 16 12 C 0.04 2.28 5.23 84.65 0.44 2.73 16 13 N -0.84 -50.51 11.21 21.45 0.24 -50.27 16 14 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.04 1.90 5.74 24.83 0.14 2.05 16 19 C -0.26 -11.82 10.81 22.19 0.24 -11.58 16 20 C -0.21 -8.18 10.91 22.19 0.24 -7.94 16 21 C -0.08 -3.38 12.09 66.97 0.81 -2.57 16 22 O -0.16 -8.55 9.66 1.93 0.02 -8.53 16 23 N -0.25 -10.76 11.65 -48.22 -0.56 -11.32 16 24 N -0.27 -8.09 3.04 -314.20 -0.96 -9.05 16 25 C 0.13 2.52 3.55 44.99 0.16 2.68 16 26 C -0.16 -3.25 9.36 71.98 0.67 -2.58 16 27 C -0.16 -2.93 9.37 71.98 0.67 -2.26 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 0.69 7.01 -2.39 -0.02 0.67 16 31 H 0.17 5.41 8.06 -2.91 -0.02 5.39 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.15 6.18 8.06 -2.91 -0.02 6.15 16 34 H 0.18 5.10 8.06 -2.91 -0.02 5.07 16 35 H 0.23 6.75 8.06 -2.91 -0.02 6.73 16 36 H 0.15 1.44 6.54 -2.39 -0.02 1.43 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -84.83 366.77 7.43 -77.40 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.03 Total: 20.74 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 5.78 Total: -15.77 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -1.28 Total: -70.64 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.13 Total: -59.25 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -84.83 7.43 -77.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.196 kcal (2) G-P(sol) polarization free energy of solvation -84.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds