Wall clock time and date at job start Tue Mar 31 2020 12:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00266 * 2 1 4 4 H 1.48508 * 109.46928 * 239.99936 * 3 2 1 5 5 H 1.48491 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47379 * 120.00290 * 3 2 1 7 7 C 1.37884 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99563 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47184 * 180.02562 * 9 7 2 11 11 O 1.21277 * 120.00541 * 0.02562 * 10 9 7 12 12 N 1.34782 * 120.00137 * 180.02562 * 10 9 7 13 13 C 1.49188 * 129.44010 * 4.38897 * 12 10 9 14 14 C 1.56747 * 99.23686 * 179.86733 * 13 12 10 15 15 C 1.57874 * 105.97771 * 41.29894 * 14 13 12 16 16 C 1.49808 * 129.44605 * 184.41797 * 12 10 9 17 17 C 1.50697 * 117.54980 * 358.81482 * 16 12 10 18 18 O 1.21287 * 119.99706 * 134.75968 * 17 16 12 19 19 N 1.34769 * 120.00212 * 314.76492 * 17 16 12 20 20 C 1.46502 * 120.00299 * 174.85257 * 19 17 16 21 21 C 1.50697 * 109.47547 * 179.97438 * 20 19 17 22 22 C 1.34514 * 125.78703 * 89.99869 * 21 20 19 23 23 C 1.41385 * 106.83957 * 180.02562 * 22 21 20 24 24 C 1.34516 * 106.83914 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.78909 * 270.02846 * 21 20 19 26 26 C 1.54878 * 103.53190 * 224.03682 * 16 12 10 27 27 H 0.97004 * 119.99659 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00177 * 9 7 2 29 29 H 1.09002 * 109.47213 * 300.00176 * 9 7 2 30 30 H 1.09005 * 111.44538 * 297.37103 * 13 12 10 31 31 H 1.08997 * 111.44513 * 62.36156 * 13 12 10 32 32 H 1.09004 * 118.47435 * 181.31071 * 14 13 12 33 33 H 1.08997 * 114.84415 * 188.45237 * 15 14 13 34 34 H 1.08994 * 114.68750 * 54.24338 * 15 14 13 35 35 H 0.97000 * 120.00261 * 354.84959 * 19 17 16 36 36 H 1.09012 * 109.46968 * 60.00141 * 20 19 17 37 37 H 1.08991 * 109.47276 * 300.00236 * 20 19 17 38 38 H 1.07990 * 126.58375 * 0.06032 * 22 21 20 39 39 H 1.07996 * 126.58223 * 180.02562 * 23 22 21 40 40 H 1.08003 * 125.78843 * 180.26319 * 24 23 22 41 41 H 1.09004 * 114.45117 * 47.51143 * 26 16 12 42 42 H 1.09005 * 114.45435 * 180.94797 * 26 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4226 -3.4231 -0.0001 12 7 1.7809 -4.9154 -0.0011 13 6 0.3819 -5.4260 -0.0899 14 6 0.6719 -6.9653 -0.0334 15 6 1.7980 -7.1558 1.0565 16 6 2.5511 -6.1972 0.0879 17 6 4.0530 -6.1039 0.1678 18 8 4.6605 -6.7771 0.9732 19 7 4.7212 -5.2722 -0.6557 20 6 6.1677 -5.0965 -0.5035 21 6 6.6673 -4.1228 -1.5394 22 6 6.7549 -2.7891 -1.3878 23 6 7.2706 -2.2722 -2.5986 24 6 7.4667 -3.3210 -3.4178 25 8 7.1001 -4.4393 -2.7707 26 6 1.8886 -7.0934 -0.9876 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6246 -2.5572 0.8897 30 1 -0.2156 -5.1015 0.7622 31 1 -0.0865 -5.1430 -1.0325 32 1 -0.1693 -7.6554 -0.0999 33 1 2.2150 -8.1612 1.1133 34 1 1.5665 -6.7248 2.0305 35 1 4.2445 -4.7900 -1.3494 36 1 6.6664 -6.0566 -0.6374 37 1 6.3839 -4.7106 0.4926 38 1 6.4840 -2.2220 -0.5096 39 1 7.4690 -1.2346 -2.8227 40 1 7.8577 -3.2724 -4.4234 41 1 1.7453 -6.6084 -1.9532 42 1 2.3117 -8.0951 -1.0633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:47 Heat of formation + Delta-G solvation = 23.679130 kcal Electronic energy + Delta-G solvation = -27385.028734 eV Core-core repulsion = 23527.876813 eV Total energy + Delta-G solvation = -3857.151921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.44993 -41.42049 -38.62066 -37.79792 -34.75499 -33.01264 -32.81381 -32.15743 -30.47055 -28.79979 -28.25255 -25.87437 -25.26090 -24.22757 -22.73080 -21.62534 -20.85424 -20.44496 -19.80531 -18.75786 -17.36580 -16.81292 -16.31460 -16.22547 -15.72157 -15.29979 -15.05915 -14.91101 -14.77152 -14.54834 -13.98196 -13.77219 -13.45236 -13.31815 -12.92229 -12.67736 -12.52736 -12.37317 -12.16117 -12.08605 -11.80811 -11.56938 -11.36886 -11.24926 -11.15244 -10.84431 -10.66854 -10.24495 -10.02088 -9.83704 -9.68036 -9.34957 -9.05381 -8.49052 -8.45698 -8.42149 -8.24053 -6.11601 -4.11449 1.71566 2.53651 2.73243 3.02579 3.32260 3.33047 3.35283 3.42403 3.48646 3.65454 4.16173 4.31336 4.42268 4.54026 4.58609 4.70023 4.98904 5.14315 5.18257 5.26855 5.34183 5.48259 5.60299 5.62921 5.64542 5.70207 5.80757 5.84955 5.88863 5.93690 5.98927 6.02928 6.11919 6.19152 6.48659 6.61729 6.65330 7.11509 7.23192 7.24747 7.77685 7.90041 7.95112 8.28342 8.41256 8.97407 9.05171 9.53441 11.00657 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.006428 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.486480 B = 4354.891896 C = 7264.777166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.017 3.983 10 C 0.535 3.465 11 O -0.528 6.528 12 N -0.624 5.624 13 C 0.120 3.880 14 C -0.132 4.132 15 C -0.112 4.112 16 C 0.097 3.903 17 C 0.557 3.443 18 O -0.549 6.549 19 N -0.690 5.690 20 C 0.212 3.788 21 C -0.038 4.038 22 C -0.165 4.165 23 C -0.213 4.213 24 C -0.041 4.041 25 O -0.177 6.177 26 C -0.139 4.139 27 H 0.262 0.738 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.201 0.799 41 H 0.076 0.924 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -13.048 -5.068 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.022 4.022 10 C 0.328 3.672 11 O -0.403 6.403 12 N -0.365 5.365 13 C -0.003 4.003 14 C -0.151 4.151 15 C -0.151 4.151 16 C 0.008 3.992 17 C 0.342 3.658 18 O -0.427 6.427 19 N -0.342 5.342 20 C 0.089 3.911 21 C -0.088 4.088 22 C -0.185 4.185 23 C -0.232 4.232 24 C -0.109 4.109 25 O -0.074 6.074 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.218 0.782 41 H 0.095 0.905 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.291 -13.343 -4.606 15.454 hybrid contribution 0.011 1.614 -0.368 1.656 sum 6.302 -11.728 -4.974 14.213 Atomic orbital electron populations 1.69945 1.06028 1.27073 1.50861 1.24987 0.94890 0.99413 0.95154 0.86500 0.79420 0.82372 0.78825 1.20140 1.21334 1.20146 1.21094 0.94168 0.88923 1.50486 0.90685 1.19187 0.93875 0.89716 0.99410 1.21988 0.91289 0.81020 0.72856 1.90567 1.17364 1.82993 1.49355 1.50014 1.07219 1.03192 1.76034 1.22842 0.84104 0.90770 1.02559 1.24804 0.96167 0.96544 0.97551 1.24347 0.94672 0.99019 0.97027 1.23041 0.89152 0.86535 1.00447 1.19277 0.87411 0.78992 0.80098 1.90669 1.69127 1.45060 1.37823 1.45929 1.07537 1.44932 1.35823 1.19419 0.81150 0.96175 0.94337 1.22202 1.05778 0.95321 0.85500 1.21784 1.02899 0.93487 1.00303 1.21907 1.06316 1.00329 0.94676 1.24005 1.04781 0.83289 0.98847 1.83984 1.63905 1.35123 1.24368 1.24160 0.96646 0.99763 0.97246 0.92801 0.93547 0.93482 0.90079 0.89867 0.85924 0.87592 0.90467 0.75261 0.90414 0.88682 0.82874 0.83395 0.78196 0.90489 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.18 8.92 -34.44 -0.31 -14.48 16 8 H 0.08 2.16 6.75 -52.48 -0.35 1.81 16 9 C 0.02 0.42 4.93 -29.04 -0.14 0.28 16 10 C 0.54 11.59 7.80 -10.99 -0.09 11.51 16 11 O -0.53 -12.32 11.75 5.56 0.07 -12.25 16 12 N -0.62 -10.71 3.37 -157.31 -0.53 -11.24 16 13 C 0.12 1.58 7.01 -0.53 0.00 1.57 16 14 C -0.13 -1.37 6.45 -91.00 -0.59 -1.95 16 15 C -0.11 -1.40 7.43 -26.77 -0.20 -1.60 16 16 C 0.10 1.48 2.26 -134.91 -0.30 1.18 16 17 C 0.56 9.84 6.92 -10.99 -0.08 9.76 16 18 O -0.55 -10.71 16.69 5.55 0.09 -10.62 16 19 N -0.69 -11.78 3.63 -61.47 -0.22 -12.00 16 20 C 0.21 3.30 6.21 -5.19 -0.03 3.27 16 21 C -0.04 -0.60 6.69 -35.63 -0.24 -0.83 16 22 C -0.16 -2.64 10.81 -39.70 -0.43 -3.07 16 23 C -0.21 -2.95 10.91 -39.70 -0.43 -3.38 16 24 C -0.04 -0.51 12.09 29.42 0.36 -0.15 16 25 O -0.18 -2.58 10.65 5.71 0.06 -2.52 16 26 C -0.14 -1.60 7.32 -28.75 -0.21 -1.81 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.18 7.92 -51.93 -0.41 0.77 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 7.34 6.91 -40.82 -0.28 7.06 16 36 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 37 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.15 2.57 8.06 -52.49 -0.42 2.14 16 39 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.20 1.59 8.06 -52.48 -0.42 1.16 16 41 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.10 0.96 7.92 -51.93 -0.41 0.55 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -33.00 356.65 -7.90 -40.90 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.66 Total: 8.92 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.79 Total: 1.77 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.02 Total: -48.28 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.22 Total: -25.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.00 -7.90 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.579 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds