Wall clock time and date at job start Tue Mar 31 2020 12:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00266 * 2 1 4 4 H 1.48508 * 109.46928 * 239.99936 * 3 2 1 5 5 H 1.48491 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47379 * 120.00290 * 3 2 1 7 7 C 1.37884 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99563 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47184 * 180.02562 * 9 7 2 11 11 O 1.21277 * 120.00541 * 0.02562 * 10 9 7 12 12 N 1.34782 * 120.00137 * 180.02562 * 10 9 7 13 13 C 1.49188 * 129.44010 * 4.38897 * 12 10 9 14 14 C 1.56747 * 99.23686 * 179.86733 * 13 12 10 15 15 C 1.57874 * 105.97771 * 41.29894 * 14 13 12 16 16 C 1.49808 * 129.44605 * 184.41797 * 12 10 9 17 17 C 1.50697 * 117.54980 * 358.81482 * 16 12 10 18 18 O 1.21287 * 119.99706 * 134.75968 * 17 16 12 19 19 N 1.34769 * 120.00212 * 314.76492 * 17 16 12 20 20 C 1.46502 * 120.00299 * 174.85257 * 19 17 16 21 21 C 1.50697 * 109.47547 * 179.97438 * 20 19 17 22 22 C 1.34514 * 125.78703 * 89.99869 * 21 20 19 23 23 C 1.41385 * 106.83957 * 180.02562 * 22 21 20 24 24 C 1.34516 * 106.83914 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.78909 * 270.02846 * 21 20 19 26 26 C 1.54878 * 103.53190 * 224.03682 * 16 12 10 27 27 H 0.97004 * 119.99659 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00177 * 9 7 2 29 29 H 1.09002 * 109.47213 * 300.00176 * 9 7 2 30 30 H 1.09005 * 111.44538 * 297.37103 * 13 12 10 31 31 H 1.08997 * 111.44513 * 62.36156 * 13 12 10 32 32 H 1.09004 * 118.47435 * 181.31071 * 14 13 12 33 33 H 1.08997 * 114.84415 * 188.45237 * 15 14 13 34 34 H 1.08994 * 114.68750 * 54.24338 * 15 14 13 35 35 H 0.97000 * 120.00261 * 354.84959 * 19 17 16 36 36 H 1.09012 * 109.46968 * 60.00141 * 20 19 17 37 37 H 1.08991 * 109.47276 * 300.00236 * 20 19 17 38 38 H 1.07990 * 126.58375 * 0.06032 * 22 21 20 39 39 H 1.07996 * 126.58223 * 180.02562 * 23 22 21 40 40 H 1.08003 * 125.78843 * 180.26319 * 24 23 22 41 41 H 1.09004 * 114.45117 * 47.51143 * 26 16 12 42 42 H 1.09005 * 114.45435 * 180.94797 * 26 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4226 -3.4231 -0.0001 12 7 1.7809 -4.9154 -0.0011 13 6 0.3819 -5.4260 -0.0899 14 6 0.6719 -6.9653 -0.0334 15 6 1.7980 -7.1558 1.0565 16 6 2.5511 -6.1972 0.0879 17 6 4.0530 -6.1039 0.1678 18 8 4.6605 -6.7771 0.9732 19 7 4.7212 -5.2722 -0.6557 20 6 6.1677 -5.0965 -0.5035 21 6 6.6673 -4.1228 -1.5394 22 6 6.7549 -2.7891 -1.3878 23 6 7.2706 -2.2722 -2.5986 24 6 7.4667 -3.3210 -3.4178 25 8 7.1001 -4.4393 -2.7707 26 6 1.8886 -7.0934 -0.9876 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6246 -2.5572 0.8897 30 1 -0.2156 -5.1015 0.7622 31 1 -0.0865 -5.1430 -1.0325 32 1 -0.1693 -7.6554 -0.0999 33 1 2.2150 -8.1612 1.1133 34 1 1.5665 -6.7248 2.0305 35 1 4.2445 -4.7900 -1.3494 36 1 6.6664 -6.0566 -0.6374 37 1 6.3839 -4.7106 0.4926 38 1 6.4840 -2.2220 -0.5096 39 1 7.4690 -1.2346 -2.8227 40 1 7.8577 -3.2724 -4.4234 41 1 1.7453 -6.6084 -1.9532 42 1 2.3117 -8.0951 -1.0633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:46 Heat of formation + Delta-G solvation = 2.324378 kcal Electronic energy + Delta-G solvation = -27385.954746 eV Core-core repulsion = 23527.876813 eV Total energy + Delta-G solvation = -3858.077933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57910 -42.58924 -39.96958 -39.41399 -36.09598 -35.10731 -33.96326 -33.57542 -31.69040 -30.72997 -29.39000 -27.07863 -26.22740 -26.02864 -24.20890 -22.75942 -22.18917 -21.62062 -20.89748 -20.06716 -18.77507 -18.39098 -17.98882 -17.58921 -17.05027 -16.60409 -16.54503 -16.39341 -16.09371 -15.97440 -15.44129 -14.96936 -14.85159 -14.66516 -14.26416 -14.09894 -13.84903 -13.77388 -13.58454 -13.37588 -13.12337 -12.93309 -12.85938 -12.64155 -12.47537 -12.35629 -12.24106 -12.00148 -11.47087 -11.22258 -11.09491 -10.89071 -10.64033 -10.63738 -9.93411 -9.59461 -9.54658 -8.26777 -6.33178 0.57802 1.20559 1.37529 1.39320 1.47921 1.58703 1.82753 1.91375 2.02439 2.38876 2.40572 3.08980 3.20307 3.29271 3.46009 3.55066 3.57549 3.77603 4.05011 4.08216 4.17079 4.31426 4.40333 4.47415 4.67153 4.70266 4.74801 4.83357 4.84070 4.93717 4.96177 5.01145 5.02720 5.08967 5.13156 5.22473 5.24759 5.32421 5.49676 5.71822 6.03538 6.10104 6.40962 6.59896 6.80673 7.04116 7.32193 7.42097 8.85226 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.006428 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.486480 B = 4354.891896 C = 7264.777166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.026 3.974 10 C 0.533 3.467 11 O -0.556 6.556 12 N -0.623 5.623 13 C 0.105 3.895 14 C -0.095 4.095 15 C -0.109 4.109 16 C 0.065 3.935 17 C 0.548 3.452 18 O -0.575 6.575 19 N -0.689 5.689 20 C 0.213 3.787 21 C -0.048 4.048 22 C -0.188 4.188 23 C -0.234 4.234 24 C -0.020 4.020 25 O -0.182 6.182 26 C -0.124 4.124 27 H 0.267 0.733 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.165 0.835 40 H 0.250 0.750 41 H 0.077 0.923 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -14.521 -6.620 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.325 3.675 11 O -0.433 6.433 12 N -0.362 5.362 13 C -0.016 4.016 14 C -0.113 4.113 15 C -0.148 4.148 16 C -0.023 4.023 17 C 0.334 3.666 18 O -0.455 6.455 19 N -0.339 5.339 20 C 0.090 3.910 21 C -0.098 4.098 22 C -0.209 4.209 23 C -0.253 4.253 24 C -0.087 4.087 25 O -0.078 6.078 26 C -0.162 4.162 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.188 0.812 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.151 0.849 39 H 0.183 0.817 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.792 -14.856 -6.163 17.095 hybrid contribution 0.169 2.064 0.107 2.074 sum 5.962 -12.792 -6.056 15.358 Atomic orbital electron populations 1.70021 1.07060 1.28044 1.51186 1.25721 0.95764 1.02476 0.94636 0.85589 0.78428 0.78764 0.78784 1.19627 1.19993 1.20164 1.21307 0.93669 0.90936 1.50964 0.92457 1.18921 0.93905 0.90304 0.98246 1.21267 0.90249 0.82287 0.73732 1.90553 1.17915 1.83998 1.50858 1.49746 1.09641 1.02648 1.74139 1.23234 0.81933 0.93173 1.03299 1.24780 0.96647 0.94682 0.95187 1.24482 0.94983 0.98847 0.96442 1.23477 0.87717 0.86257 1.04823 1.19803 0.88667 0.78574 0.79567 1.90638 1.69993 1.46211 1.38702 1.46005 1.08033 1.44397 1.35506 1.19390 0.80802 0.96835 0.93952 1.22042 1.06625 0.94946 0.86149 1.21854 1.03997 0.94081 1.00930 1.22169 1.07209 1.01854 0.94084 1.24914 1.02096 0.81858 0.99860 1.83990 1.63881 1.36112 1.23858 1.24202 0.96019 0.99747 0.96223 0.92449 0.94264 0.94953 0.89971 0.88718 0.81245 0.85524 0.91794 0.75878 0.89070 0.90083 0.84870 0.81717 0.73417 0.90441 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 13.29 21.45 0.28 -53.18 16 2 C 0.01 0.73 5.46 84.66 0.46 1.19 16 3 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.53 -30.63 8.92 25.60 0.23 -30.40 16 8 H 0.06 3.46 6.75 -2.91 -0.02 3.44 16 9 C 0.03 1.30 4.93 29.10 0.14 1.44 16 10 C 0.53 23.91 7.80 87.65 0.68 24.59 16 11 O -0.56 -27.22 11.75 -3.02 -0.04 -27.26 16 12 N -0.62 -21.35 3.37 -770.00 -2.60 -23.94 16 13 C 0.10 2.57 7.01 87.17 0.61 3.18 16 14 C -0.10 -1.58 6.45 -11.04 -0.07 -1.65 16 15 C -0.11 -2.45 7.43 30.57 0.23 -2.22 16 16 C 0.06 1.92 2.26 -0.24 0.00 1.92 16 17 C 0.55 19.52 6.92 87.66 0.61 20.13 16 18 O -0.58 -22.70 16.69 -3.05 -0.05 -22.75 16 19 N -0.69 -24.28 3.63 -466.79 -1.69 -25.97 16 20 C 0.21 6.94 6.21 85.63 0.53 7.47 16 21 C -0.05 -1.53 6.69 24.83 0.17 -1.37 16 22 C -0.19 -6.33 10.81 22.19 0.24 -6.09 16 23 C -0.23 -6.36 10.91 22.19 0.24 -6.12 16 24 C -0.02 -0.45 12.09 66.97 0.81 0.36 16 25 O -0.18 -5.13 10.65 -2.47 -0.03 -5.16 16 26 C -0.12 -2.42 7.32 29.29 0.21 -2.20 16 27 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.17 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.13 2.38 7.92 -2.39 -0.02 2.36 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.40 15.03 6.91 -92.71 -0.64 14.39 16 36 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.13 4.90 8.06 -2.92 -0.02 4.88 16 39 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 40 H 0.25 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.08 1.56 8.09 -2.38 -0.02 1.54 16 42 H 0.12 1.87 7.92 -2.38 -0.02 1.85 16 Total: -1.00 -74.74 356.65 3.41 -71.33 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.41 Total: 29.64 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.09 Total: 10.22 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.01 Total: -103.09 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.11 Total: -55.17 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.74 3.41 -71.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.657 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds