Wall clock time and date at job start Tue Mar 31 2020 12:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48501 * 109.46746 * 269.99628 * 3 2 1 5 5 H 1.48496 * 109.47553 * 29.99603 * 3 2 1 6 6 H 1.48499 * 109.46970 * 150.00006 * 3 2 1 7 7 C 1.37875 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46995 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00225 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99786 * 179.97438 * 10 9 7 13 13 C 1.48016 * 125.10578 * 180.52499 * 12 10 9 14 14 C 1.53920 * 107.48514 * 182.56097 * 13 12 10 15 15 H 1.09002 * 112.92501 * 248.52985 * 14 13 12 16 16 C 1.54602 * 107.99986 * 122.90221 * 14 13 12 17 17 C 1.54031 * 103.74088 * 275.80447 * 16 14 13 18 18 N 1.46846 * 106.52549 * 331.57561 * 17 16 14 19 19 C 1.34783 * 125.32669 * 198.30715 * 18 17 16 20 20 O 1.21693 * 120.00153 * 179.97438 * 19 18 17 21 21 C 1.46656 * 119.99532 * 359.97395 * 19 18 17 22 22 C 1.36548 * 125.98612 * 179.97438 * 21 19 18 23 23 C 1.40368 * 106.70829 * 179.97438 * 22 21 19 24 24 C 1.35131 * 107.11409 * 0.02562 * 23 22 21 25 25 O 1.33929 * 108.77024 * 359.76980 * 24 23 22 26 26 C 1.46120 * 109.35376 * 18.28657 * 18 17 16 27 27 H 1.09004 * 110.72530 * 238.03010 * 26 18 17 28 28 C 1.46668 * 125.28205 * 0.02646 * 12 10 9 29 29 H 0.97007 * 119.99756 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47088 * 59.99706 * 9 7 2 31 31 H 1.09003 * 109.47047 * 299.99969 * 9 7 2 32 32 H 1.09004 * 110.99176 * 62.57893 * 13 12 10 33 33 H 1.09000 * 109.21719 * 301.53792 * 13 12 10 34 34 H 1.09001 * 110.56760 * 34.36991 * 16 14 13 35 35 H 1.09005 * 110.56814 * 157.23579 * 16 14 13 36 36 H 1.09001 * 110.04690 * 90.84291 * 17 16 14 37 37 H 1.09004 * 110.04616 * 212.30808 * 17 16 14 38 38 H 1.08005 * 126.64437 * 359.93493 * 22 21 19 39 39 H 1.08001 * 126.43876 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.61450 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.91984 * 43.66489 * 28 12 10 42 42 H 1.09001 * 109.91834 * 282.36374 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 8 3.4227 -3.4230 0.0022 12 7 1.7810 -4.9153 0.0025 13 6 2.6388 -6.1214 0.0149 14 6 1.7123 -7.3486 -0.0544 15 1 1.7072 -7.9294 0.8679 16 6 2.1176 -8.1840 -1.2906 17 6 1.3626 -7.5096 -2.4515 18 7 0.1529 -6.9122 -1.8719 19 6 -0.9405 -6.5378 -2.5653 20 8 -1.8926 -6.0511 -1.9842 21 6 -0.9829 -6.7169 -4.0203 22 6 -2.0228 -6.3831 -4.8399 23 6 -1.6343 -6.7255 -6.1446 24 6 -0.3903 -7.2472 -6.0651 25 8 0.0007 -7.2361 -4.7842 26 6 0.3196 -6.7875 -0.4256 27 1 -0.4676 -7.3267 0.1014 28 6 0.3698 -5.3148 0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.2388 -6.1646 0.9239 33 1 3.2934 -6.1051 -0.8565 34 1 3.1943 -8.1313 -1.4520 35 1 1.7968 -9.2193 -1.1750 36 1 1.9835 -6.7346 -2.9009 37 1 1.0901 -8.2523 -3.2014 38 1 -2.9624 -5.9417 -4.5419 39 1 -2.2197 -6.5962 -7.0429 40 1 0.1938 -7.6101 -6.8978 41 1 -0.1889 -4.7034 -0.7069 42 1 -0.0482 -5.2040 1.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:22 Heat of formation + Delta-G solvation = -41.002656 kcal Electronic energy + Delta-G solvation = -27138.235647 eV Core-core repulsion = 23278.278913 eV Total energy + Delta-G solvation = -3859.956734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.87291 -40.87136 -38.75453 -37.66593 -34.89285 -33.30910 -32.91470 -32.35182 -30.55661 -29.66657 -28.79969 -27.34251 -24.43544 -24.22258 -22.78705 -22.05951 -21.89062 -20.43819 -19.74068 -18.74666 -17.88807 -17.11510 -16.53773 -16.42672 -16.19800 -15.63317 -15.45913 -14.87123 -14.70377 -14.44735 -14.16196 -13.63912 -13.45522 -13.31961 -13.20684 -12.96086 -12.88252 -12.69432 -12.48997 -12.17789 -11.90002 -11.79745 -11.37373 -11.18301 -11.03310 -10.94936 -10.71426 -10.56843 -10.33250 -10.25391 -9.91477 -9.21121 -9.04948 -8.81025 -8.58454 -8.38957 -8.04860 -6.00251 -4.00519 0.89990 2.16240 2.41117 2.89366 3.07073 3.37928 3.42696 3.48780 3.62140 3.69621 3.99914 4.26331 4.44307 4.47692 4.52747 4.70358 4.77250 4.87138 5.01707 5.08005 5.26953 5.36877 5.39908 5.42829 5.50788 5.57084 5.59311 5.68529 5.73806 5.81417 5.88063 5.97362 6.04465 6.12069 6.19291 6.28612 6.66015 6.87621 7.23668 7.26878 7.38572 7.90148 8.00748 8.05358 8.41768 9.09504 9.21577 9.64082 11.11966 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.004025 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.267910 B = 6954.112118 C = 8222.459912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.012 3.988 10 C 0.532 3.468 11 O -0.544 6.544 12 N -0.631 5.631 13 C 0.112 3.888 14 C -0.106 4.106 15 H 0.113 0.887 16 C -0.123 4.123 17 C 0.101 3.899 18 N -0.599 5.599 19 C 0.617 3.383 20 O -0.509 6.509 21 C -0.071 4.071 22 C -0.119 4.119 23 C -0.224 4.224 24 C -0.012 4.012 25 O -0.161 6.161 26 C 0.133 3.867 27 H 0.100 0.900 28 C 0.101 3.899 29 H 0.261 0.739 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.086 0.914 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -22.613 -9.106 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.028 4.028 10 C 0.324 3.676 11 O -0.420 6.420 12 N -0.369 5.369 13 C -0.011 4.011 14 C -0.126 4.126 15 H 0.131 0.869 16 C -0.161 4.161 17 C -0.022 4.022 18 N -0.332 5.332 19 C 0.405 3.595 20 O -0.386 6.386 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.243 4.243 24 C -0.082 4.082 25 O -0.057 6.057 26 C 0.029 3.971 27 H 0.118 0.882 28 C -0.024 4.024 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.226 0.774 41 H 0.104 0.896 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.497 -22.070 -8.691 23.767 hybrid contribution 0.162 0.920 -0.351 0.998 sum -1.335 -21.150 -9.042 23.041 Atomic orbital electron populations 1.69978 1.06023 1.26868 1.50949 1.25011 0.94896 0.99434 0.95221 0.86433 0.79845 0.82696 0.78137 1.20640 1.21239 1.19663 1.21165 0.94197 0.89122 1.50312 0.90737 1.19217 0.93981 0.90196 0.99358 1.21834 0.90875 0.81824 0.73046 1.90537 1.17995 1.83729 1.49693 1.48901 1.06009 1.05418 1.76574 1.22037 0.93327 0.83684 1.02033 1.22937 0.93482 0.96668 0.99471 0.86930 1.22616 1.01156 0.99202 0.93136 1.22144 0.85840 0.97672 0.96539 1.47921 1.15758 1.61574 1.07944 1.16155 0.81918 0.78405 0.82998 1.90931 1.35352 1.44240 1.68103 1.21975 0.89741 1.08714 0.91901 1.22003 0.99796 1.00258 0.91925 1.21864 0.97394 1.06428 0.98594 1.24421 0.96736 1.02542 0.84522 1.84162 1.40062 1.63580 1.17862 1.21977 0.97893 0.96524 0.80662 0.88172 1.22033 0.84044 0.94061 1.02252 0.92900 0.93647 0.93483 0.91502 0.91674 0.89127 0.90235 0.91031 0.89909 0.82100 0.82622 0.77447 0.89613 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 22.75 29.54 -169.99 -5.02 17.72 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.39 8.92 -34.44 -0.31 -15.70 16 8 H 0.07 2.33 6.75 -52.48 -0.35 1.98 16 9 C 0.01 0.31 4.50 -29.04 -0.13 0.18 16 10 C 0.53 12.91 7.83 -10.99 -0.09 12.83 16 11 O -0.54 -14.75 15.76 5.55 0.09 -14.66 16 12 N -0.63 -11.80 3.34 -171.50 -0.57 -12.37 16 13 C 0.11 1.59 6.35 -2.73 -0.02 1.57 16 14 C -0.11 -1.05 4.12 -88.42 -0.36 -1.42 16 15 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.12 -0.97 6.23 -25.35 -0.16 -1.12 16 17 C 0.10 1.03 5.76 -3.32 -0.02 1.01 16 18 N -0.60 -7.79 3.04 -165.77 -0.50 -8.29 16 19 C 0.62 9.27 7.42 -12.86 -0.10 9.18 16 20 O -0.51 -9.13 16.44 5.20 0.09 -9.04 16 21 C -0.07 -0.94 6.92 -36.80 -0.25 -1.19 16 22 C -0.12 -1.41 10.62 -39.39 -0.42 -1.83 16 23 C -0.22 -2.01 10.87 -39.89 -0.43 -2.44 16 24 C -0.01 -0.10 12.08 29.63 0.36 0.26 16 25 O -0.16 -1.75 7.96 4.98 0.04 -1.71 16 26 C 0.13 1.66 3.55 -67.04 -0.24 1.42 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 28 C 0.10 1.65 6.11 -3.73 -0.02 1.63 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.05 1.28 7.89 -51.93 -0.41 0.87 16 31 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 34 H 0.09 0.62 7.62 -51.93 -0.40 0.23 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.74 6.55 -51.93 -0.34 0.40 16 38 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.09 1.66 6.64 -51.93 -0.34 1.31 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -37.14 349.67 -7.75 -44.90 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.59 Total: -1.10 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.29 Total: 5.91 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.34 Total: -47.28 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: 0.21 Total: -25.42 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.14 -7.75 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.893 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds