Wall clock time and date at job start Tue Mar 31 2020 12:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48501 * 109.46746 * 269.99628 * 3 2 1 5 5 H 1.48496 * 109.47553 * 29.99603 * 3 2 1 6 6 H 1.48499 * 109.46970 * 150.00006 * 3 2 1 7 7 C 1.37875 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46995 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00225 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99786 * 179.97438 * 10 9 7 13 13 C 1.48016 * 125.10578 * 180.52499 * 12 10 9 14 14 C 1.53920 * 107.48514 * 182.56097 * 13 12 10 15 15 H 1.09002 * 112.92501 * 248.52985 * 14 13 12 16 16 C 1.54602 * 107.99986 * 122.90221 * 14 13 12 17 17 C 1.54031 * 103.74088 * 275.80447 * 16 14 13 18 18 N 1.46846 * 106.52549 * 331.57561 * 17 16 14 19 19 C 1.34783 * 125.32669 * 198.30715 * 18 17 16 20 20 O 1.21693 * 120.00153 * 179.97438 * 19 18 17 21 21 C 1.46656 * 119.99532 * 359.97395 * 19 18 17 22 22 C 1.36548 * 125.98612 * 179.97438 * 21 19 18 23 23 C 1.40368 * 106.70829 * 179.97438 * 22 21 19 24 24 C 1.35131 * 107.11409 * 0.02562 * 23 22 21 25 25 O 1.33929 * 108.77024 * 359.76980 * 24 23 22 26 26 C 1.46120 * 109.35376 * 18.28657 * 18 17 16 27 27 H 1.09004 * 110.72530 * 238.03010 * 26 18 17 28 28 C 1.46668 * 125.28205 * 0.02646 * 12 10 9 29 29 H 0.97007 * 119.99756 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47088 * 59.99706 * 9 7 2 31 31 H 1.09003 * 109.47047 * 299.99969 * 9 7 2 32 32 H 1.09004 * 110.99176 * 62.57893 * 13 12 10 33 33 H 1.09000 * 109.21719 * 301.53792 * 13 12 10 34 34 H 1.09001 * 110.56760 * 34.36991 * 16 14 13 35 35 H 1.09005 * 110.56814 * 157.23579 * 16 14 13 36 36 H 1.09001 * 110.04690 * 90.84291 * 17 16 14 37 37 H 1.09004 * 110.04616 * 212.30808 * 17 16 14 38 38 H 1.08005 * 126.64437 * 359.93493 * 22 21 19 39 39 H 1.08001 * 126.43876 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.61450 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.91984 * 43.66489 * 28 12 10 42 42 H 1.09001 * 109.91834 * 282.36374 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 8 3.4227 -3.4230 0.0022 12 7 1.7810 -4.9153 0.0025 13 6 2.6388 -6.1214 0.0149 14 6 1.7123 -7.3486 -0.0544 15 1 1.7072 -7.9294 0.8679 16 6 2.1176 -8.1840 -1.2906 17 6 1.3626 -7.5096 -2.4515 18 7 0.1529 -6.9122 -1.8719 19 6 -0.9405 -6.5378 -2.5653 20 8 -1.8926 -6.0511 -1.9842 21 6 -0.9829 -6.7169 -4.0203 22 6 -2.0228 -6.3831 -4.8399 23 6 -1.6343 -6.7255 -6.1446 24 6 -0.3903 -7.2472 -6.0651 25 8 0.0007 -7.2361 -4.7842 26 6 0.3196 -6.7875 -0.4256 27 1 -0.4676 -7.3267 0.1014 28 6 0.3698 -5.3148 0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.2388 -6.1646 0.9239 33 1 3.2934 -6.1051 -0.8565 34 1 3.1943 -8.1313 -1.4520 35 1 1.7968 -9.2193 -1.1750 36 1 1.9835 -6.7346 -2.9009 37 1 1.0901 -8.2523 -3.2014 38 1 -2.9624 -5.9417 -4.5419 39 1 -2.2197 -6.5962 -7.0429 40 1 0.1938 -7.6101 -6.8978 41 1 -0.1889 -4.7034 -0.7069 42 1 -0.0482 -5.2040 1.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:21 Heat of formation + Delta-G solvation = -67.201589 kcal Electronic energy + Delta-G solvation = -27139.371718 eV Core-core repulsion = 23278.278913 eV Total energy + Delta-G solvation = -3861.092805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.68320 -41.99048 -40.27598 -39.08735 -36.27445 -35.19086 -34.12781 -33.43930 -31.63558 -31.25443 -30.25758 -28.58773 -26.19205 -25.24723 -24.43352 -22.91286 -22.73619 -21.35262 -20.80234 -20.33277 -18.86797 -18.63283 -18.11551 -17.53644 -17.40483 -17.12506 -16.88827 -16.50498 -16.12378 -15.84426 -15.42938 -14.89379 -14.62586 -14.37489 -14.25576 -14.15070 -14.06612 -13.94429 -13.77273 -13.60995 -13.29415 -13.20306 -12.87709 -12.82532 -12.63836 -12.20133 -12.07856 -12.04278 -11.74912 -11.50940 -11.46675 -11.06952 -10.69405 -10.67188 -10.02345 -9.69848 -9.53969 -8.30379 -6.40757 -0.01148 1.35635 1.38091 1.39842 1.50670 1.51182 1.73829 1.99673 2.05319 2.06511 2.39534 3.03782 3.06433 3.34921 3.53713 3.63001 3.92602 3.98005 4.07376 4.09763 4.17671 4.20070 4.30689 4.42752 4.58235 4.62549 4.71185 4.73638 4.74926 4.87354 4.92811 4.94216 4.98288 5.07027 5.12597 5.18179 5.24547 5.39350 5.42868 5.67339 5.85055 5.96327 6.23399 6.46016 6.73356 6.82495 7.24809 7.34896 8.82227 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.004025 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.267910 B = 6954.112118 C = 8222.459912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.531 3.469 11 O -0.579 6.579 12 N -0.623 5.623 13 C 0.103 3.897 14 C -0.086 4.086 15 H 0.154 0.846 16 C -0.110 4.110 17 C 0.095 3.905 18 N -0.600 5.600 19 C 0.607 3.393 20 O -0.557 6.557 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.234 4.234 24 C 0.010 3.990 25 O -0.164 6.164 26 C 0.133 3.867 27 H 0.122 0.878 28 C 0.095 3.905 29 H 0.268 0.732 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.258 0.742 41 H 0.047 0.953 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -24.982 -10.140 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.323 3.677 11 O -0.459 6.459 12 N -0.358 5.358 13 C -0.018 4.018 14 C -0.105 4.105 15 H 0.172 0.828 16 C -0.148 4.148 17 C -0.027 4.027 18 N -0.332 5.332 19 C 0.397 3.603 20 O -0.438 6.438 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.253 4.253 24 C -0.059 4.059 25 O -0.060 6.060 26 C 0.030 3.970 27 H 0.140 0.860 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.171 0.829 39 H 0.201 0.799 40 H 0.274 0.726 41 H 0.065 0.935 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.212 -24.514 -9.729 26.374 hybrid contribution -0.305 1.617 -0.143 1.651 sum -0.518 -22.897 -9.872 24.940 Atomic orbital electron populations 1.70082 1.07495 1.28270 1.50800 1.25928 0.95874 1.03195 0.94119 0.85343 0.78481 0.77882 0.78720 1.19520 1.19577 1.19405 1.21367 0.93730 0.90989 1.51751 0.92290 1.18962 0.94068 0.91496 0.97556 1.21086 0.89591 0.83326 0.73747 1.90496 1.18690 1.84793 1.51876 1.48696 1.08020 1.05179 1.73926 1.22441 0.93802 0.83141 1.02429 1.23031 0.89966 0.95057 1.02416 0.82838 1.22675 1.01812 1.00073 0.90202 1.22356 0.84658 0.97521 0.98128 1.48066 1.15981 1.60863 1.08260 1.16529 0.81894 0.77828 0.84024 1.90881 1.37109 1.46463 1.69323 1.21678 0.91085 1.11688 0.91421 1.22257 0.99408 0.99742 0.93579 1.22209 0.98293 1.06674 0.98123 1.25443 0.96548 0.99686 0.84223 1.84147 1.39496 1.63453 1.18892 1.22083 1.00496 0.93564 0.80905 0.86008 1.22186 0.82161 0.96630 1.01894 0.92292 0.95997 0.94854 0.90621 0.91872 0.87447 0.86838 0.93025 0.88170 0.82896 0.79936 0.72615 0.93483 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 47.34 29.54 68.60 2.03 49.37 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.54 -34.12 8.92 25.60 0.23 -33.89 16 8 H 0.06 3.85 6.75 -2.91 -0.02 3.83 16 9 C 0.02 1.07 4.50 29.10 0.13 1.20 16 10 C 0.53 27.12 7.83 87.66 0.69 27.80 16 11 O -0.58 -32.63 15.76 -3.04 -0.05 -32.68 16 12 N -0.62 -23.97 3.34 -814.88 -2.72 -26.69 16 13 C 0.10 2.78 6.35 86.40 0.55 3.33 16 14 C -0.09 -1.42 4.12 -9.37 -0.04 -1.45 16 15 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 16 C -0.11 -1.27 6.23 31.49 0.20 -1.07 16 17 C 0.10 1.77 5.76 86.66 0.50 2.27 16 18 N -0.60 -15.49 3.04 -796.59 -2.42 -17.92 16 19 C 0.61 19.14 7.42 86.44 0.64 19.78 16 20 O -0.56 -21.54 16.44 -4.32 -0.07 -21.62 16 21 C -0.11 -2.87 6.92 24.07 0.17 -2.70 16 22 C -0.13 -3.13 10.62 22.39 0.24 -2.89 16 23 C -0.23 -3.79 10.87 22.07 0.24 -3.55 16 24 C 0.01 0.14 12.08 67.10 0.81 0.95 16 25 O -0.16 -3.34 7.96 -5.09 -0.04 -3.38 16 26 C 0.13 3.19 3.55 45.77 0.16 3.35 16 27 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 28 C 0.10 3.26 6.11 86.49 0.53 3.78 16 29 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 30 H 0.02 1.35 7.89 -2.39 -0.02 1.33 16 31 H 0.03 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.75 7.30 -2.39 -0.02 1.73 16 34 H 0.11 0.99 7.62 -2.39 -0.02 0.98 16 35 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.52 6.55 -2.38 -0.02 1.51 16 38 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.26 0.59 8.06 -2.91 -0.02 0.56 16 41 H 0.05 1.98 6.64 -2.39 -0.02 1.97 16 42 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -87.71 349.67 3.54 -84.16 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.04 Total: 8.66 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.50 Total: 17.81 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -4.86 Total: -102.33 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -0.16 Total: -57.67 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -87.71 3.54 -84.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.963 kcal (2) G-P(sol) polarization free energy of solvation -87.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds