Wall clock time and date at job start Tue Mar 31 2020 12:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47163 * 239.99783 * 3 2 1 5 5 H 1.48497 * 109.47448 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47020 * 120.00385 * 3 2 1 7 7 C 1.37879 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99686 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46886 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99803 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00200 * 179.97438 * 10 9 7 13 13 C 1.39958 * 119.99945 * 175.33319 * 12 10 9 14 14 C 1.38994 * 119.99915 * 215.02570 * 13 12 10 15 15 C 1.38206 * 120.22305 * 179.76751 * 14 13 12 16 16 C 1.38026 * 120.22183 * 0.51272 * 15 14 13 17 17 C 1.39581 * 119.99226 * 359.74811 * 16 15 14 18 18 C 1.47863 * 120.10427 * 180.02562 * 17 16 15 19 19 O 1.21555 * 119.99835 * 224.77177 * 18 17 16 20 20 N 1.34775 * 120.00408 * 44.78152 * 18 17 16 21 21 C 1.47153 * 120.97682 * 355.49478 * 20 18 17 22 22 C 1.53711 * 108.16308 * 129.43533 * 21 20 18 23 23 O 1.42963 * 109.14925 * 52.52935 * 22 21 20 24 24 C 1.42955 * 114.16912 * 297.29557 * 23 22 21 25 25 C 1.47148 * 120.98468 * 175.77519 * 20 18 17 26 26 C 1.38594 * 120.00077 * 35.31052 * 13 12 10 27 27 H 0.97001 * 119.99512 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47499 * 299.99158 * 9 7 2 29 29 H 1.09001 * 109.47370 * 60.00191 * 9 7 2 30 30 H 0.97003 * 120.00224 * 355.34226 * 12 10 9 31 31 H 1.07996 * 119.88604 * 0.02972 * 14 13 12 32 32 H 1.07994 * 119.89255 * 180.25993 * 15 14 13 33 33 H 1.08001 * 120.00090 * 179.72093 * 16 15 14 34 34 H 1.09003 * 109.67840 * 249.20562 * 21 20 18 35 35 H 1.08993 * 109.68606 * 9.76302 * 21 20 18 36 36 H 1.09005 * 109.65675 * 292.56711 * 22 21 20 37 37 H 1.09002 * 109.48650 * 172.39418 * 22 21 20 38 38 H 1.08999 * 109.51058 * 302.65303 * 24 23 22 39 39 H 1.09004 * 109.55662 * 182.52791 * 24 23 22 40 40 H 1.09005 * 109.68136 * 350.23431 * 25 20 18 41 41 H 1.08996 * 109.68336 * 110.78806 * 25 20 18 42 42 H 1.08008 * 120.10570 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6447 -0.0027 11 8 3.4228 -3.4230 -0.0030 12 7 1.7811 -4.9153 -0.0033 13 6 2.6868 -5.9777 -0.1029 14 6 2.3356 -7.1272 -0.8009 15 6 3.2281 -8.1771 -0.9062 16 6 4.4703 -8.0955 -0.3100 17 6 4.8304 -6.9476 0.3978 18 6 6.1607 -6.8573 1.0370 19 8 6.2624 -6.4316 2.1710 20 7 7.2605 -7.2468 0.3623 21 6 7.1537 -7.8562 -0.9728 22 6 8.1146 -7.1148 -1.9161 23 8 9.4193 -7.0905 -1.3322 24 6 9.4928 -6.3821 -0.0927 25 6 8.6029 -7.0808 0.9416 26 6 3.9316 -5.8859 0.4995 27 1 -0.4849 0.8401 0.0004 28 1 0.6241 -2.5576 0.8880 29 1 0.6247 -2.5563 -0.8920 30 1 0.8300 -5.0935 0.0651 31 1 1.3636 -7.1984 -1.2662 32 1 2.9513 -9.0661 -1.4534 33 1 5.1633 -8.9199 -0.3907 34 1 7.4283 -8.9096 -0.9185 35 1 6.1316 -7.7611 -1.3392 36 1 7.7645 -6.0936 -2.0676 37 1 8.1543 -7.6320 -2.8748 38 1 9.1477 -5.3583 -0.2376 39 1 10.5237 -6.3721 0.2613 40 1 8.5409 -6.4720 1.8436 41 1 9.0209 -8.0575 1.1854 42 1 4.2047 -4.9951 1.0459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:42 Heat of formation + Delta-G solvation = -74.913321 kcal Electronic energy + Delta-G solvation = -26308.494993 eV Core-core repulsion = 22447.067782 eV Total energy + Delta-G solvation = -3861.427211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86246 -39.81762 -38.54546 -37.69816 -35.07289 -34.27665 -33.04134 -31.99967 -31.01211 -30.12697 -28.44340 -28.07800 -24.74252 -24.13510 -23.84295 -22.42119 -21.78820 -19.85546 -19.76666 -17.98729 -16.99363 -16.53389 -16.52108 -16.28591 -15.95685 -15.85578 -15.59665 -15.28378 -15.19400 -14.64494 -14.55006 -14.16364 -13.96657 -13.49715 -13.29902 -12.99580 -12.88934 -12.57173 -12.18891 -12.15558 -11.90619 -11.65763 -11.58723 -11.35679 -11.00128 -10.87171 -10.71319 -10.47231 -10.22522 -10.04393 -9.78541 -9.39268 -9.08333 -8.82039 -8.75201 -8.50275 -7.96918 -6.13328 -4.13823 0.92087 1.35347 2.52738 2.71131 3.33628 3.36124 3.36783 3.40326 3.50318 3.57455 3.84321 4.26254 4.41600 4.43128 4.65116 4.75131 4.81567 4.90529 4.93429 5.00344 5.12894 5.21639 5.25272 5.30147 5.40326 5.42092 5.47843 5.54319 5.60043 5.77193 6.06843 6.14106 6.22067 6.34590 6.41825 6.57625 6.76202 7.00985 7.09831 7.14846 7.18274 7.77817 7.90019 7.98541 8.22447 8.91031 8.96776 9.51669 10.98858 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.003303 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.447013 B = 8475.168894 C = 9725.416661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.008 3.992 10 C 0.514 3.486 11 O -0.521 6.521 12 N -0.690 5.690 13 C 0.162 3.838 14 C -0.134 4.134 15 C -0.105 4.105 16 C -0.126 4.126 17 C -0.114 4.114 18 C 0.569 3.431 19 O -0.527 6.527 20 N -0.614 5.614 21 C 0.059 3.941 22 C 0.045 3.955 23 O -0.381 6.381 24 C 0.047 3.953 25 C 0.078 3.922 26 C -0.072 4.072 27 H 0.263 0.737 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.410 0.590 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -20.455 -3.963 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.031 4.031 10 C 0.305 3.695 11 O -0.395 6.395 12 N -0.336 5.336 13 C 0.066 3.934 14 C -0.155 4.155 15 C -0.124 4.124 16 C -0.146 4.146 17 C -0.118 4.118 18 C 0.358 3.642 19 O -0.403 6.403 20 N -0.349 5.349 21 C -0.064 4.064 22 C -0.033 4.033 23 O -0.299 6.299 24 C -0.031 4.031 25 C -0.044 4.044 26 C -0.094 4.094 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.246 0.754 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.429 -19.894 -3.427 23.198 hybrid contribution -0.422 0.835 0.065 0.938 sum 11.006 -19.060 -3.362 22.264 Atomic orbital electron populations 1.69944 1.06051 1.27218 1.50685 1.24994 0.94929 0.99538 0.94958 0.86459 0.79391 0.82114 0.78943 1.20081 1.21260 1.20032 1.21089 0.94234 0.88960 1.50869 0.90658 1.19274 0.93949 0.89985 0.99878 1.22404 0.91542 0.82930 0.72608 1.90554 1.17906 1.84089 1.46973 1.44184 1.09758 1.05198 1.74507 1.17833 0.91338 0.88695 0.95522 1.21133 1.01022 0.93838 0.99489 1.20800 0.93102 0.98472 0.99993 1.21195 0.97424 0.97249 0.98716 1.19611 0.94298 0.96255 1.01597 1.18435 0.83958 0.76484 0.85341 1.90795 1.86294 1.45466 1.17784 1.47988 1.06066 1.62317 1.18513 1.22994 1.02979 0.97603 0.82790 1.23110 0.83069 1.00880 0.96220 1.87942 1.29268 1.75874 1.36851 1.23012 1.00721 0.95287 0.84053 1.22295 0.81820 1.02172 0.98118 1.21387 0.92274 0.98599 0.97090 0.92708 0.92961 0.92970 0.75386 0.85241 0.85223 0.85458 0.90303 0.86995 0.92124 0.87501 0.92265 0.87488 0.87926 0.90603 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.56 8.92 -34.44 -0.31 -14.87 16 8 H 0.08 2.23 6.75 -52.49 -0.35 1.88 16 9 C 0.01 0.20 5.46 -29.03 -0.16 0.04 16 10 C 0.51 11.23 7.67 -10.99 -0.08 11.15 16 11 O -0.52 -13.06 12.90 5.55 0.07 -12.98 16 12 N -0.69 -11.49 5.34 -9.89 -0.05 -11.55 16 13 C 0.16 2.53 6.29 -83.73 -0.53 2.01 16 14 C -0.13 -1.57 9.96 -39.31 -0.39 -1.96 16 15 C -0.11 -1.03 10.02 -39.67 -0.40 -1.43 16 16 C -0.13 -1.37 7.33 -39.16 -0.29 -1.65 16 17 C -0.11 -1.67 5.21 -104.99 -0.55 -2.22 16 18 C 0.57 8.81 7.31 -12.32 -0.09 8.72 16 19 O -0.53 -10.07 16.47 5.32 0.09 -9.98 16 20 N -0.61 -7.36 3.01 -173.13 -0.52 -7.88 16 21 C 0.06 0.52 5.32 -3.32 -0.02 0.51 16 22 C 0.04 0.39 7.00 37.53 0.26 0.66 16 23 O -0.38 -3.90 10.74 -35.23 -0.38 -4.28 16 24 C 0.05 0.43 6.98 37.31 0.26 0.70 16 25 C 0.08 0.81 6.62 -3.54 -0.02 0.79 16 26 C -0.07 -1.26 8.33 -38.99 -0.32 -1.59 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.41 5.43 8.82 -40.82 -0.36 5.07 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.04 6.48 -52.49 -0.34 0.70 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.97 4.39 -51.93 -0.23 0.74 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.18 7.11 -51.93 -0.37 0.81 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.15 3.15 6.23 -52.48 -0.33 2.83 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -35.17 349.86 -7.88 -43.05 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.34 Total: 4.23 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.73 Total: 2.35 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.16 Total: -44.56 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.22 Total: -27.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.17 -7.88 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.863 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds