Wall clock time and date at job start Tue Mar 31 2020 12:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47163 * 239.99783 * 3 2 1 5 5 H 1.48497 * 109.47448 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47020 * 120.00385 * 3 2 1 7 7 C 1.37879 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99686 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46886 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99803 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00200 * 179.97438 * 10 9 7 13 13 C 1.39958 * 119.99945 * 175.33319 * 12 10 9 14 14 C 1.38994 * 119.99915 * 215.02570 * 13 12 10 15 15 C 1.38206 * 120.22305 * 179.76751 * 14 13 12 16 16 C 1.38026 * 120.22183 * 0.51272 * 15 14 13 17 17 C 1.39581 * 119.99226 * 359.74811 * 16 15 14 18 18 C 1.47863 * 120.10427 * 180.02562 * 17 16 15 19 19 O 1.21555 * 119.99835 * 224.77177 * 18 17 16 20 20 N 1.34775 * 120.00408 * 44.78152 * 18 17 16 21 21 C 1.47153 * 120.97682 * 355.49478 * 20 18 17 22 22 C 1.53711 * 108.16308 * 129.43533 * 21 20 18 23 23 O 1.42963 * 109.14925 * 52.52935 * 22 21 20 24 24 C 1.42955 * 114.16912 * 297.29557 * 23 22 21 25 25 C 1.47148 * 120.98468 * 175.77519 * 20 18 17 26 26 C 1.38594 * 120.00077 * 35.31052 * 13 12 10 27 27 H 0.97001 * 119.99512 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47499 * 299.99158 * 9 7 2 29 29 H 1.09001 * 109.47370 * 60.00191 * 9 7 2 30 30 H 0.97003 * 120.00224 * 355.34226 * 12 10 9 31 31 H 1.07996 * 119.88604 * 0.02972 * 14 13 12 32 32 H 1.07994 * 119.89255 * 180.25993 * 15 14 13 33 33 H 1.08001 * 120.00090 * 179.72093 * 16 15 14 34 34 H 1.09003 * 109.67840 * 249.20562 * 21 20 18 35 35 H 1.08993 * 109.68606 * 9.76302 * 21 20 18 36 36 H 1.09005 * 109.65675 * 292.56711 * 22 21 20 37 37 H 1.09002 * 109.48650 * 172.39418 * 22 21 20 38 38 H 1.08999 * 109.51058 * 302.65303 * 24 23 22 39 39 H 1.09004 * 109.55662 * 182.52791 * 24 23 22 40 40 H 1.09005 * 109.68136 * 350.23431 * 25 20 18 41 41 H 1.08996 * 109.68336 * 110.78806 * 25 20 18 42 42 H 1.08008 * 120.10570 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6447 -0.0027 11 8 3.4228 -3.4230 -0.0030 12 7 1.7811 -4.9153 -0.0033 13 6 2.6868 -5.9777 -0.1029 14 6 2.3356 -7.1272 -0.8009 15 6 3.2281 -8.1771 -0.9062 16 6 4.4703 -8.0955 -0.3100 17 6 4.8304 -6.9476 0.3978 18 6 6.1607 -6.8573 1.0370 19 8 6.2624 -6.4316 2.1710 20 7 7.2605 -7.2468 0.3623 21 6 7.1537 -7.8562 -0.9728 22 6 8.1146 -7.1148 -1.9161 23 8 9.4193 -7.0905 -1.3322 24 6 9.4928 -6.3821 -0.0927 25 6 8.6029 -7.0808 0.9416 26 6 3.9316 -5.8859 0.4995 27 1 -0.4849 0.8401 0.0004 28 1 0.6241 -2.5576 0.8880 29 1 0.6247 -2.5563 -0.8920 30 1 0.8300 -5.0935 0.0651 31 1 1.3636 -7.1984 -1.2662 32 1 2.9513 -9.0661 -1.4534 33 1 5.1633 -8.9199 -0.3907 34 1 7.4283 -8.9096 -0.9185 35 1 6.1316 -7.7611 -1.3392 36 1 7.7645 -6.0936 -2.0676 37 1 8.1543 -7.6320 -2.8748 38 1 9.1477 -5.3583 -0.2376 39 1 10.5237 -6.3721 0.2613 40 1 8.5409 -6.4720 1.8436 41 1 9.0209 -8.0575 1.1854 42 1 4.2047 -4.9951 1.0459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:42 Heat of formation + Delta-G solvation = -100.811662 kcal Electronic energy + Delta-G solvation = -26309.618030 eV Core-core repulsion = 22447.067782 eV Total energy + Delta-G solvation = -3862.550247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94266 -41.13138 -39.61610 -38.93355 -36.16265 -35.58902 -35.17245 -32.87044 -32.03086 -31.64936 -30.03945 -28.98378 -26.06765 -25.51709 -24.86033 -23.65327 -22.76124 -21.38204 -20.78708 -19.14708 -18.52552 -18.12642 -17.62057 -17.33688 -17.21170 -16.90415 -16.71821 -16.45438 -16.39081 -16.08650 -15.87196 -15.30831 -15.10988 -14.79525 -14.51597 -14.33594 -14.22360 -13.96666 -13.47358 -13.29220 -12.97222 -12.87228 -12.80945 -12.68959 -12.59218 -12.40379 -12.08715 -11.84435 -11.54486 -11.52907 -11.34827 -10.90850 -10.66806 -10.62553 -10.02010 -9.71032 -9.17523 -8.30342 -6.37658 -0.12341 0.28193 1.36918 1.39222 1.42905 1.47984 1.65772 1.81707 2.16645 2.41725 2.72504 2.80458 3.05408 3.28823 3.66401 3.86290 3.90971 4.02054 4.06272 4.13592 4.19334 4.19549 4.23630 4.43070 4.46114 4.55658 4.58319 4.67625 4.77142 4.85345 4.88394 4.99103 5.18142 5.21209 5.26370 5.30245 5.33692 5.47668 5.67661 5.94588 5.98164 6.01159 6.09628 6.54319 6.74829 6.87507 7.24335 7.35519 8.81475 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.003303 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.447013 B = 8475.168894 C = 9725.416661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.013 3.987 10 C 0.517 3.483 11 O -0.563 6.563 12 N -0.671 5.671 13 C 0.130 3.870 14 C -0.116 4.116 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.129 4.129 18 C 0.558 3.442 19 O -0.583 6.583 20 N -0.609 5.609 21 C 0.056 3.944 22 C 0.041 3.959 23 O -0.387 6.387 24 C 0.051 3.949 25 C 0.074 3.926 26 C -0.106 4.106 27 H 0.269 0.731 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.427 0.573 31 H 0.164 0.836 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.039 0.961 37 H 0.140 0.860 38 H 0.040 0.960 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.576 -23.820 -6.191 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.070 0.930 9 C -0.027 4.027 10 C 0.308 3.692 11 O -0.440 6.440 12 N -0.318 5.318 13 C 0.036 3.964 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.123 4.123 17 C -0.133 4.133 18 C 0.348 3.652 19 O -0.463 6.463 20 N -0.342 5.342 21 C -0.065 4.065 22 C -0.036 4.036 23 O -0.306 6.306 24 C -0.026 4.026 25 C -0.048 4.048 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.266 0.734 31 H 0.181 0.819 32 H 0.201 0.799 33 H 0.183 0.817 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.058 0.942 37 H 0.157 0.843 38 H 0.058 0.942 39 H 0.152 0.848 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.454 -23.327 -5.697 26.605 hybrid contribution -0.392 1.728 0.713 1.910 sum 11.062 -21.600 -4.984 24.774 Atomic orbital electron populations 1.70004 1.06972 1.28291 1.50768 1.25723 0.95850 1.02537 0.94336 0.85560 0.78458 0.78588 0.78798 1.19710 1.19517 1.20172 1.21306 0.93587 0.91324 1.51791 0.92956 1.19082 0.94005 0.90075 0.99494 1.21821 0.90259 0.84367 0.72800 1.90549 1.19212 1.85093 1.49185 1.43669 1.10911 1.03942 1.73239 1.18034 0.90674 0.89797 0.97936 1.21542 1.02716 0.92020 0.97306 1.21412 0.91517 0.99134 0.98352 1.21641 0.98517 0.96094 0.96014 1.19634 0.93534 0.97147 1.02964 1.18771 0.85271 0.76155 0.84981 1.90752 1.87165 1.48163 1.20253 1.48147 1.05695 1.61006 1.19378 1.23286 1.03425 0.99010 0.80796 1.23274 0.82480 1.00266 0.97549 1.87937 1.30049 1.75726 1.36867 1.23039 1.01856 0.94013 0.83733 1.22439 0.81370 1.03213 0.97760 1.21073 0.94457 0.98224 0.99040 0.92213 0.93459 0.92942 0.73428 0.81862 0.79877 0.81715 0.87001 0.86519 0.94225 0.84251 0.94207 0.84837 0.89993 0.88216 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.54 -32.15 8.92 25.60 0.23 -31.93 16 8 H 0.05 3.29 6.75 -2.91 -0.02 3.27 16 9 C 0.01 0.65 5.46 29.10 0.16 0.81 16 10 C 0.52 23.94 7.67 87.66 0.67 24.61 16 11 O -0.56 -30.52 12.90 -3.06 -0.04 -30.56 16 12 N -0.67 -22.87 5.34 -303.59 -1.62 -24.49 16 13 C 0.13 4.05 6.29 38.11 0.24 4.29 16 14 C -0.12 -2.28 9.96 22.44 0.22 -2.05 16 15 C -0.09 -1.21 10.02 22.21 0.22 -0.99 16 16 C -0.10 -1.85 7.33 22.54 0.17 -1.68 16 17 C -0.13 -3.80 5.21 -20.10 -0.10 -3.90 16 18 C 0.56 18.01 7.31 86.79 0.63 18.64 16 19 O -0.58 -24.22 16.47 -3.89 -0.06 -24.28 16 20 N -0.61 -14.30 3.01 -819.94 -2.47 -16.78 16 21 C 0.06 0.83 5.32 86.49 0.46 1.29 16 22 C 0.04 0.64 7.00 72.22 0.51 1.14 16 23 O -0.39 -7.18 10.74 -148.98 -1.60 -8.78 16 24 C 0.05 0.92 6.98 72.08 0.50 1.42 16 25 C 0.07 1.53 6.62 86.35 0.57 2.10 16 26 C -0.11 -3.95 8.33 22.66 0.19 -3.76 16 27 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.43 11.16 8.82 -92.71 -0.82 10.35 16 31 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.17 1.72 6.48 -2.91 -0.02 1.71 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 1.59 4.39 -2.39 -0.01 1.58 16 36 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.08 2.04 7.11 -2.38 -0.02 2.02 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 42 H 0.09 4.54 6.23 -2.91 -0.02 4.52 16 Total: -1.00 -84.42 349.86 1.89 -82.53 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.25 Total: 16.52 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.13 Total: 11.31 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -3.81 Total: -94.54 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -1.70 Total: -63.62 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -84.42 1.89 -82.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.286 kcal (2) G-P(sol) polarization free energy of solvation -84.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds