Wall clock time and date at job start Tue Mar 31 2020 12:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39232 * 119.53956 * 2 1 4 4 C 1.36132 * 121.05766 * 179.97438 * 3 2 1 5 5 C 1.40562 * 119.77429 * 0.02562 * 4 3 2 6 6 C 1.40538 * 121.26638 * 179.97438 * 5 4 3 7 7 C 1.36109 * 119.65095 * 180.02562 * 6 5 4 8 8 C 1.39352 * 120.97194 * 359.97438 * 7 6 5 9 9 C 1.36144 * 120.97131 * 0.02562 * 8 7 6 10 10 C 1.40408 * 119.66560 * 359.71041 * 9 8 7 11 11 C 1.36636 * 119.53737 * 179.97438 * 2 1 3 12 12 O 1.35805 * 120.22806 * 359.97438 * 11 2 1 13 13 C 1.42895 * 117.00416 * 89.99616 * 12 11 2 14 14 H 1.08998 * 109.47128 * 330.00140 * 13 12 11 15 15 C 1.50709 * 109.46975 * 89.99817 * 13 12 11 16 16 H 1.07997 * 119.99602 * 35.40305 * 15 13 12 17 17 C 1.37878 * 119.99868 * 215.39793 * 15 13 12 18 18 N 1.31513 * 120.00262 * 4.69585 * 17 15 13 19 19 Si 1.86796 * 119.99671 * 184.69258 * 17 15 13 20 20 H 1.48499 * 109.46892 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47261 * 299.99881 * 19 17 15 22 22 H 1.48501 * 109.47274 * 60.00061 * 19 17 15 23 23 C 1.50699 * 109.47574 * 210.00100 * 13 12 11 24 24 C 1.38243 * 119.99600 * 320.35494 * 23 13 12 25 25 C 1.38233 * 119.99382 * 179.80782 * 24 23 13 26 26 C 1.38233 * 120.00320 * 0.39947 * 25 24 23 27 27 C 1.38242 * 120.00072 * 359.85688 * 26 25 24 28 28 C 1.38232 * 120.00114 * 140.63074 * 23 13 12 29 29 H 1.08997 * 109.47327 * 270.02670 * 1 2 3 30 30 H 1.09006 * 109.47156 * 30.03004 * 1 2 3 31 31 H 1.09001 * 109.47102 * 150.02185 * 1 2 3 32 32 H 1.07998 * 119.46969 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.11783 * 180.02562 * 4 3 2 34 34 H 1.08008 * 120.17692 * 0.04309 * 6 5 4 35 35 H 1.08003 * 119.51173 * 179.97438 * 7 6 5 36 36 H 1.07991 * 119.51461 * 179.97438 * 8 7 6 37 37 H 1.08004 * 120.16258 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99983 * 354.70251 * 18 17 15 39 39 H 1.07992 * 120.00157 * 0.02562 * 24 23 13 40 40 H 1.08003 * 119.99751 * 180.23201 * 25 24 23 41 41 H 1.07998 * 120.00216 * 179.82931 * 26 25 24 42 42 H 1.07998 * 119.99829 * 179.97438 * 27 26 25 43 43 H 1.07999 * 119.99920 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2113 0.0000 4 6 3.5543 1.2474 0.0005 5 6 4.2844 0.0463 0.0005 6 6 5.6898 0.0469 0.0005 7 6 6.3637 -1.1357 0.0000 8 6 5.6806 -2.3503 0.0000 9 6 4.3197 -2.3888 0.0000 10 6 3.5906 -1.1889 0.0062 11 6 2.1806 -1.1888 0.0005 12 8 1.4968 -2.3621 0.0016 13 6 1.1695 -2.9235 -1.2711 14 1 1.0415 -2.1226 -1.9993 15 6 2.2821 -3.8363 -1.7186 16 1 2.8219 -4.4258 -0.9923 17 6 2.6107 -3.9187 -3.0551 18 7 2.0173 -3.1340 -3.9278 19 14 3.8988 -5.1450 -3.6262 20 1 4.0685 -5.0356 -5.0974 21 1 5.1916 -4.8531 -2.9562 22 1 3.4609 -6.5208 -3.2789 23 6 -0.1111 -3.7099 -1.1590 24 6 -0.3512 -4.4836 -0.0388 25 6 -1.5277 -5.2018 0.0658 26 6 -2.4603 -5.1530 -0.9534 27 6 -2.2178 -4.3835 -2.0760 28 6 -1.0430 -3.6622 -2.1788 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6374 2.1372 -0.0004 33 1 4.0713 2.1956 0.0009 34 1 6.2323 0.9809 0.0012 35 1 7.4437 -1.1325 -0.0004 36 1 6.2390 -3.2746 -0.0008 37 1 3.8037 -3.3376 0.0004 38 1 1.2950 -2.5519 -3.6442 39 1 0.3787 -4.5241 0.7561 40 1 -1.7170 -5.8034 0.9426 41 1 -3.3782 -5.7163 -0.8729 42 1 -2.9462 -4.3457 -2.8724 43 1 -0.8536 -3.0609 -3.0557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226814194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:32 Heat of formation + Delta-G solvation = 22.567433 kcal Electronic energy + Delta-G solvation = -26539.216588 eV Core-core repulsion = 23092.865723 eV Total energy + Delta-G solvation = -3446.350865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17446 -38.66821 -37.30440 -35.87545 -33.46197 -31.76157 -31.17213 -30.49716 -30.20075 -28.66885 -26.73078 -25.82507 -23.47536 -22.79469 -21.91156 -21.55599 -21.01204 -20.42242 -17.59932 -17.15995 -16.70416 -16.30426 -15.60205 -15.15009 -14.84820 -14.25006 -14.13127 -13.89742 -13.73034 -13.51388 -13.31111 -13.01297 -12.93228 -12.69254 -12.45883 -12.28777 -12.09231 -11.88384 -11.81609 -11.25590 -11.19008 -10.96249 -10.74610 -10.58010 -10.47563 -10.37427 -10.26813 -9.91803 -9.75914 -9.07922 -8.81492 -8.53045 -8.24994 -8.03169 -7.82821 -7.13918 -6.62430 -4.37086 1.05517 1.49836 2.06936 2.09498 2.55751 3.32390 3.32818 3.42803 3.50903 4.29258 4.36401 4.58366 4.83492 5.10555 5.12485 5.24796 5.35997 5.47374 5.48228 5.50485 5.55544 5.65877 5.72663 5.83763 5.88771 5.99407 6.03979 6.07180 6.08603 6.22474 6.28620 6.43244 6.50958 6.55926 6.57687 6.64447 6.72758 6.73875 6.82573 6.96294 7.03280 7.11684 7.18520 7.19920 7.28152 7.45905 7.53536 7.66688 7.75811 8.05336 8.51054 8.59615 9.31957 10.70803 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.006139 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.673652 B = 4559.994586 C = 6073.130012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.140 4.140 3 C -0.093 4.093 4 C -0.137 4.137 5 C -0.039 4.039 6 C -0.133 4.133 7 C -0.107 4.107 8 C -0.150 4.150 9 C -0.054 4.054 10 C -0.065 4.065 11 C 0.159 3.841 12 O -0.343 6.343 13 C 0.234 3.766 14 H 0.041 0.959 15 C -0.598 4.598 16 H 0.065 0.935 17 C 0.035 3.965 18 N -0.889 5.889 19 Si 1.061 2.939 20 H -0.279 1.279 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.035 4.035 24 C -0.103 4.103 25 C -0.128 4.128 26 C -0.147 4.147 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 4.070 6.769 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.141 4.141 3 C -0.112 4.112 4 C -0.155 4.155 5 C -0.039 4.039 6 C -0.151 4.151 7 C -0.125 4.125 8 C -0.168 4.168 9 C -0.072 4.072 10 C -0.066 4.066 11 C 0.114 3.886 12 O -0.261 6.261 13 C 0.181 3.819 14 H 0.058 0.942 15 C -0.634 4.634 16 H 0.084 0.916 17 C -0.172 4.172 18 N -0.524 5.524 19 Si 0.888 3.112 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.035 4.035 24 C -0.121 4.121 25 C -0.146 4.146 26 C -0.165 4.165 27 C -0.141 4.141 28 C -0.138 4.138 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.464 3.446 5.558 6.556 hybrid contribution -0.730 0.487 0.943 1.288 sum -0.266 3.933 6.501 7.603 Atomic orbital electron populations 1.20608 0.91224 1.02369 1.01736 1.19798 0.96603 0.92595 1.05108 1.20482 0.94141 0.96655 0.99877 1.20800 0.94043 0.96691 1.03951 1.17957 0.93472 0.92514 0.99982 1.20794 0.92763 0.97955 1.03546 1.20770 0.99341 0.92770 0.99603 1.20781 0.94778 0.97528 1.03714 1.21535 0.93750 0.98936 0.92957 1.18411 0.93193 0.93380 1.01595 1.18187 0.88841 0.85914 0.95632 1.85854 1.73129 1.34324 1.32814 1.19137 0.90401 0.92353 0.79973 0.94170 1.22212 1.18149 1.27645 0.95435 0.91647 1.25867 1.00342 0.98123 0.92907 1.70853 1.22746 1.21212 1.37562 0.83648 0.75465 0.75388 0.76742 1.20455 1.20751 1.20946 1.20276 0.93467 0.96655 0.93150 1.20892 0.96590 0.96509 0.98133 1.21021 0.94907 1.00109 0.98606 1.20881 0.99412 1.01157 0.95050 1.20943 0.97341 0.98080 0.97750 1.20909 0.93440 1.00628 0.98785 0.91803 0.92409 0.91284 0.86482 0.86231 0.86364 0.86831 0.86632 0.83363 0.91750 0.86399 0.87174 0.87292 0.87064 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.75 36.01 0.35 -1.36 16 2 C -0.14 -2.64 5.86 -104.83 -0.61 -3.25 16 3 C -0.09 -1.53 9.58 -39.97 -0.38 -1.91 16 4 C -0.14 -2.22 9.77 -39.46 -0.39 -2.61 16 5 C -0.04 -0.72 5.74 -106.84 -0.61 -1.34 16 6 C -0.13 -2.14 9.77 -39.48 -0.39 -2.52 16 7 C -0.11 -1.70 9.95 -39.93 -0.40 -2.10 16 8 C -0.15 -2.68 9.95 -39.92 -0.40 -3.07 16 9 C -0.05 -1.12 8.65 -39.52 -0.34 -1.46 16 10 C -0.07 -1.37 5.75 -106.73 -0.61 -1.98 16 11 C 0.16 3.40 5.49 -39.12 -0.21 3.19 16 12 O -0.34 -7.73 7.54 -19.13 -0.14 -7.88 16 13 C 0.23 5.55 1.59 -29.03 -0.05 5.50 16 14 H 0.04 1.04 5.79 -51.93 -0.30 0.74 16 15 C -0.60 -15.25 6.74 -34.44 -0.23 -15.48 16 16 H 0.07 1.67 6.24 -52.49 -0.33 1.35 16 17 C 0.03 0.92 5.45 -17.82 -0.10 0.82 16 18 N -0.89 -24.85 13.63 55.43 0.76 -24.09 16 19 Si 1.06 23.96 29.91 -169.99 -5.08 18.88 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.03 -0.77 4.96 -104.62 -0.52 -1.28 16 24 C -0.10 -2.08 9.35 -39.58 -0.37 -2.45 16 25 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 26 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 27 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 28 C -0.12 -2.47 9.67 -39.59 -0.38 -2.85 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.07 1.28 6.78 -51.93 -0.35 0.93 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.15 3.26 4.88 -52.48 -0.26 3.00 16 38 H 0.27 7.48 6.02 -40.82 -0.25 7.23 16 39 H 0.12 2.37 7.77 -52.49 -0.41 1.96 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.11 2.44 7.61 -52.49 -0.40 2.04 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -28.64 356.30 -11.25 -39.89 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.31 Total: 10.05 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: -6.84 Total: -42.21 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.76 Total: -24.09 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.14 Total: -7.88 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.64 -11.25 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226814194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.457 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds