Wall clock time and date at job start Tue Mar 31 2020 12:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39232 * 119.53956 * 2 1 4 4 C 1.36132 * 121.05766 * 179.97438 * 3 2 1 5 5 C 1.40562 * 119.77429 * 0.02562 * 4 3 2 6 6 C 1.40538 * 121.26638 * 179.97438 * 5 4 3 7 7 C 1.36109 * 119.65095 * 180.02562 * 6 5 4 8 8 C 1.39352 * 120.97194 * 359.97438 * 7 6 5 9 9 C 1.36144 * 120.97131 * 0.02562 * 8 7 6 10 10 C 1.40408 * 119.66560 * 359.71041 * 9 8 7 11 11 C 1.36636 * 119.53737 * 179.97438 * 2 1 3 12 12 O 1.35805 * 120.22806 * 359.97438 * 11 2 1 13 13 C 1.42895 * 117.00416 * 89.99616 * 12 11 2 14 14 H 1.08998 * 109.47128 * 330.00140 * 13 12 11 15 15 C 1.50709 * 109.46975 * 89.99817 * 13 12 11 16 16 H 1.07997 * 119.99602 * 35.40305 * 15 13 12 17 17 C 1.37878 * 119.99868 * 215.39793 * 15 13 12 18 18 N 1.31513 * 120.00262 * 4.69585 * 17 15 13 19 19 Si 1.86796 * 119.99671 * 184.69258 * 17 15 13 20 20 H 1.48499 * 109.46892 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47261 * 299.99881 * 19 17 15 22 22 H 1.48501 * 109.47274 * 60.00061 * 19 17 15 23 23 C 1.50699 * 109.47574 * 210.00100 * 13 12 11 24 24 C 1.38243 * 119.99600 * 320.35494 * 23 13 12 25 25 C 1.38233 * 119.99382 * 179.80782 * 24 23 13 26 26 C 1.38233 * 120.00320 * 0.39947 * 25 24 23 27 27 C 1.38242 * 120.00072 * 359.85688 * 26 25 24 28 28 C 1.38232 * 120.00114 * 140.63074 * 23 13 12 29 29 H 1.08997 * 109.47327 * 270.02670 * 1 2 3 30 30 H 1.09006 * 109.47156 * 30.03004 * 1 2 3 31 31 H 1.09001 * 109.47102 * 150.02185 * 1 2 3 32 32 H 1.07998 * 119.46969 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.11783 * 180.02562 * 4 3 2 34 34 H 1.08008 * 120.17692 * 0.04309 * 6 5 4 35 35 H 1.08003 * 119.51173 * 179.97438 * 7 6 5 36 36 H 1.07991 * 119.51461 * 179.97438 * 8 7 6 37 37 H 1.08004 * 120.16258 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99983 * 354.70251 * 18 17 15 39 39 H 1.07992 * 120.00157 * 0.02562 * 24 23 13 40 40 H 1.08003 * 119.99751 * 180.23201 * 25 24 23 41 41 H 1.07998 * 120.00216 * 179.82931 * 26 25 24 42 42 H 1.07998 * 119.99829 * 179.97438 * 27 26 25 43 43 H 1.07999 * 119.99920 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2113 0.0000 4 6 3.5543 1.2474 0.0005 5 6 4.2844 0.0463 0.0005 6 6 5.6898 0.0469 0.0005 7 6 6.3637 -1.1357 0.0000 8 6 5.6806 -2.3503 0.0000 9 6 4.3197 -2.3888 0.0000 10 6 3.5906 -1.1889 0.0062 11 6 2.1806 -1.1888 0.0005 12 8 1.4968 -2.3621 0.0016 13 6 1.1695 -2.9235 -1.2711 14 1 1.0415 -2.1226 -1.9993 15 6 2.2821 -3.8363 -1.7186 16 1 2.8219 -4.4258 -0.9923 17 6 2.6107 -3.9187 -3.0551 18 7 2.0173 -3.1340 -3.9278 19 14 3.8988 -5.1450 -3.6262 20 1 4.0685 -5.0356 -5.0974 21 1 5.1916 -4.8531 -2.9562 22 1 3.4609 -6.5208 -3.2789 23 6 -0.1111 -3.7099 -1.1590 24 6 -0.3512 -4.4836 -0.0388 25 6 -1.5277 -5.2018 0.0658 26 6 -2.4603 -5.1530 -0.9534 27 6 -2.2178 -4.3835 -2.0760 28 6 -1.0430 -3.6622 -2.1788 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6374 2.1372 -0.0004 33 1 4.0713 2.1956 0.0009 34 1 6.2323 0.9809 0.0012 35 1 7.4437 -1.1325 -0.0004 36 1 6.2390 -3.2746 -0.0008 37 1 3.8037 -3.3376 0.0004 38 1 1.2950 -2.5519 -3.6442 39 1 0.3787 -4.5241 0.7561 40 1 -1.7170 -5.8034 0.9426 41 1 -3.3782 -5.7163 -0.8729 42 1 -2.9462 -4.3457 -2.8724 43 1 -0.8536 -3.0609 -3.0557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226814194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:31 Heat of formation + Delta-G solvation = 10.878615 kcal Electronic energy + Delta-G solvation = -26539.723453 eV Core-core repulsion = 23092.865723 eV Total energy + Delta-G solvation = -3446.857730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61849 -40.19455 -38.80464 -37.30834 -35.31685 -33.22820 -32.61392 -32.00913 -31.69935 -30.04948 -28.39879 -27.36958 -25.29530 -24.17465 -23.40789 -22.92716 -22.45842 -22.02061 -19.35046 -18.73687 -18.15584 -17.80051 -17.05687 -16.57545 -16.38739 -15.82999 -15.71560 -15.51083 -15.24589 -15.09470 -14.77426 -14.43446 -14.36107 -14.17715 -13.82621 -13.75875 -13.61485 -13.41969 -13.19833 -12.83475 -12.67882 -12.60715 -12.31305 -12.08205 -12.03132 -11.86125 -11.80981 -11.54561 -11.40066 -10.70601 -10.53468 -10.34363 -9.75395 -9.46221 -9.40548 -8.71475 -8.53342 -6.42223 -0.34883 0.10821 0.55884 0.58988 1.13562 1.44720 1.51513 1.69441 2.05574 2.45140 2.84770 3.04060 3.15154 3.36105 3.82637 3.90578 4.03391 4.06577 4.15248 4.19330 4.23221 4.26284 4.34207 4.44443 4.55627 4.57653 4.59817 4.64296 4.71030 4.75081 4.81254 4.87981 5.06793 5.14512 5.19001 5.21043 5.24050 5.29962 5.41623 5.57226 5.63920 5.65096 5.67672 5.73336 5.82609 5.84990 5.91148 6.10576 6.16915 6.21086 6.45563 6.88026 7.35605 8.64248 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.006139 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.673652 B = 4559.994586 C = 6073.130012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.141 4.141 3 C -0.104 4.104 4 C -0.121 4.121 5 C -0.065 4.065 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.145 4.145 9 C -0.096 4.096 10 C -0.091 4.091 11 C 0.103 3.897 12 O -0.350 6.350 13 C 0.249 3.751 14 H 0.005 0.995 15 C -0.594 4.594 16 H 0.053 0.947 17 C -0.009 4.009 18 N -0.921 5.921 19 Si 1.096 2.904 20 H -0.282 1.282 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.063 4.063 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.120 4.120 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.258 0.742 39 H 0.106 0.894 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 5.133 7.765 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.142 4.142 3 C -0.122 4.122 4 C -0.138 4.138 5 C -0.065 4.065 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.163 4.163 9 C -0.114 4.114 10 C -0.091 4.091 11 C 0.059 3.941 12 O -0.268 6.268 13 C 0.195 3.805 14 H 0.022 0.978 15 C -0.631 4.631 16 H 0.071 0.929 17 C -0.210 4.210 18 N -0.559 5.559 19 Si 0.918 3.082 20 H -0.208 1.208 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.063 4.063 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.152 4.152 27 C -0.138 4.138 28 C -0.159 4.159 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.723 4.511 6.585 8.015 hybrid contribution -0.829 0.266 0.777 1.167 sum -0.106 4.778 7.363 8.778 Atomic orbital electron populations 1.20617 0.90242 1.02180 1.02535 1.20215 0.97704 0.92906 1.03343 1.20891 0.94783 0.96884 0.99651 1.21329 0.94110 0.97547 1.00825 1.18407 0.95055 0.92311 1.00761 1.21309 0.91770 0.99855 1.00895 1.21185 1.01357 0.91676 0.98838 1.21106 0.93780 0.99589 1.01823 1.21378 0.95191 0.97994 0.96852 1.18706 0.93339 0.94764 1.02330 1.18632 0.89709 0.86256 0.99531 1.85812 1.73494 1.35558 1.31966 1.18822 0.90953 0.90993 0.79733 0.97751 1.22327 1.18612 1.27100 0.95079 0.92861 1.26973 1.01646 0.98988 0.93403 1.70932 1.23944 1.23036 1.37939 0.83221 0.74446 0.74384 0.76170 1.20765 1.19202 1.19570 1.20237 0.93635 0.97733 0.94735 1.20922 0.98044 0.97555 0.97406 1.21408 0.93415 0.99018 1.00039 1.21377 1.00426 0.99862 0.93510 1.21305 0.96377 0.96956 0.99175 1.20923 0.95018 1.01948 0.98036 0.90360 0.89716 0.94240 0.82648 0.81842 0.82114 0.82763 0.85094 0.86462 0.93034 0.87592 0.83631 0.82784 0.84063 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.40 9.75 71.24 0.69 -2.71 16 2 C -0.14 -5.46 5.86 -20.00 -0.12 -5.58 16 3 C -0.10 -3.25 9.58 22.02 0.21 -3.03 16 4 C -0.12 -3.60 9.77 22.35 0.22 -3.38 16 5 C -0.07 -2.34 5.74 -21.30 -0.12 -2.47 16 6 C -0.12 -3.53 9.77 22.34 0.22 -3.31 16 7 C -0.11 -3.32 9.95 22.04 0.22 -3.10 16 8 C -0.15 -5.22 9.95 22.05 0.22 -5.00 16 9 C -0.10 -4.24 8.65 22.31 0.19 -4.05 16 10 C -0.09 -4.00 5.75 -21.23 -0.12 -4.12 16 11 C 0.10 4.71 5.49 22.57 0.12 4.84 16 12 O -0.35 -17.33 7.54 -91.36 -0.69 -18.02 16 13 C 0.25 12.90 1.59 29.10 0.05 12.94 16 14 H 0.00 0.27 5.79 -2.39 -0.01 0.26 16 15 C -0.59 -32.79 6.74 25.60 0.17 -32.62 16 16 H 0.05 2.99 6.24 -2.91 -0.02 2.97 16 17 C -0.01 -0.53 5.45 84.66 0.46 -0.07 16 18 N -0.92 -55.04 13.63 21.45 0.29 -54.75 16 19 Si 1.10 50.25 29.91 68.60 2.05 52.30 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.06 -2.96 4.96 -19.86 -0.10 -3.06 16 24 C -0.12 -5.09 9.35 22.27 0.21 -4.88 16 25 C -0.12 -4.04 10.05 22.27 0.22 -3.81 16 26 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 27 C -0.12 -4.18 10.05 22.27 0.22 -3.96 16 28 C -0.14 -6.16 9.67 22.27 0.22 -5.95 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.08 2.37 8.08 -2.38 -0.02 2.35 16 31 H 0.04 1.58 6.78 -2.39 -0.02 1.56 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.13 4.12 8.06 -2.92 -0.02 4.09 16 37 H 0.12 5.74 4.88 -2.91 -0.01 5.73 16 38 H 0.26 15.63 6.02 -92.70 -0.56 15.07 16 39 H 0.11 4.58 7.77 -2.91 -0.02 4.56 16 40 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 41 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.09 4.41 7.61 -2.91 -0.02 4.38 16 Total: -1.00 -70.08 356.30 6.30 -63.78 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 1.23 Total: 33.87 kcal Atomic # 6 Polarization: -80.60 SS G_CDS: 3.41 Total: -77.19 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.29 Total: -54.75 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.69 Total: -18.02 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -70.08 6.30 -63.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226814194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.659 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds