Wall clock time and date at job start Tue Mar 31 2020 12:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39375 * 119.50411 * 2 1 4 4 C 1.36082 * 120.98096 * 180.02562 * 3 2 1 5 5 C 1.40574 * 119.65969 * 0.02562 * 4 3 2 6 6 C 1.40458 * 121.24112 * 179.97438 * 5 4 3 7 7 C 1.36569 * 119.62364 * 180.02562 * 6 5 4 8 8 O 1.35889 * 119.56532 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99980 * 186.50287 * 8 7 6 10 10 H 1.09005 * 109.46800 * 38.32311 * 9 8 7 11 11 C 1.50703 * 109.47036 * 278.32745 * 9 8 7 12 12 H 1.07998 * 119.99845 * 126.05756 * 11 9 8 13 13 C 1.37871 * 120.00125 * 306.05879 * 11 9 8 14 14 N 1.31516 * 120.00076 * 9.73710 * 13 11 9 15 15 Si 1.86800 * 120.00345 * 189.73654 * 13 11 9 16 16 H 1.48507 * 109.46809 * 89.99811 * 15 13 11 17 17 H 1.48497 * 109.47652 * 210.00062 * 15 13 11 18 18 H 1.48502 * 109.46943 * 330.00235 * 15 13 11 19 19 C 1.50701 * 109.47210 * 158.32887 * 9 8 7 20 20 C 1.38236 * 119.99562 * 210.25044 * 19 9 8 21 21 C 1.38237 * 119.99417 * 179.97438 * 20 19 9 22 22 C 1.38227 * 120.00429 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00004 * 359.97438 * 22 21 20 24 24 C 1.38229 * 119.99907 * 30.22543 * 19 9 8 25 25 C 1.39845 * 120.86996 * 0.26489 * 7 6 5 26 26 C 1.35994 * 120.92498 * 359.44594 * 25 7 6 27 27 C 1.40593 * 119.73296 * 0.55317 * 26 25 7 28 28 C 1.36101 * 119.49979 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47765 * 269.97837 * 1 2 3 30 30 H 1.09007 * 109.47016 * 29.97933 * 1 2 3 31 31 H 1.09000 * 109.47587 * 149.97473 * 1 2 3 32 32 H 1.08006 * 119.50783 * 0.02593 * 3 2 1 33 33 H 1.07999 * 120.17616 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.18702 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00060 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.00187 * 359.97438 * 20 19 9 37 37 H 1.07998 * 119.99653 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.00459 * 179.71981 * 22 21 20 39 39 H 1.07995 * 120.00559 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.00304 * 0.02562 * 24 19 9 41 41 H 1.07997 * 119.53861 * 179.71058 * 25 7 6 42 42 H 1.08004 * 120.12811 * 180.30066 * 26 25 7 43 43 H 1.07995 * 120.17046 * 359.95648 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2130 0.0000 4 6 3.5537 1.2481 -0.0005 5 6 4.2806 0.0449 -0.0016 6 6 5.6852 0.0423 -0.0027 7 6 6.3581 -1.1461 -0.0043 8 8 7.7170 -1.1472 -0.0048 9 6 8.3647 -2.4127 -0.1507 10 1 7.8104 -3.0245 -0.8624 11 6 8.4093 -3.1109 1.1841 12 1 8.0173 -4.1123 1.2830 13 6 8.9506 -2.4713 2.2789 14 7 9.2516 -1.1928 2.2113 15 14 9.2565 -3.4204 3.8585 16 1 10.6242 -3.9984 3.8316 17 1 9.1294 -2.5035 5.0196 18 1 8.2592 -4.5140 3.9798 19 6 9.7692 -2.2030 -0.6551 20 6 10.3709 -3.1652 -1.4443 21 6 11.6591 -2.9726 -1.9074 22 6 12.3452 -1.8176 -1.5819 23 6 11.7430 -0.8549 -0.7935 24 6 10.4554 -1.0482 -0.3290 25 6 5.6671 -2.3619 -0.0104 26 6 4.3075 -2.3932 -0.0036 27 6 3.5824 -1.1887 -0.0021 28 6 2.1772 -1.1846 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6373 2.1389 0.0004 33 1 4.0724 2.1954 -0.0001 34 1 6.2299 0.9748 -0.0032 35 1 9.6321 -0.7427 2.9817 36 1 9.8347 -4.0674 -1.6990 37 1 12.1291 -3.7242 -2.5243 38 1 13.3532 -1.6692 -1.9399 39 1 12.2791 0.0473 -0.5388 40 1 9.9853 -0.2965 0.2875 41 1 6.2209 -3.2891 -0.0163 42 1 3.7870 -3.3395 -0.0035 43 1 1.6318 -2.1167 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228736752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:47 Heat of formation + Delta-G solvation = 26.158799 kcal Electronic energy + Delta-G solvation = -25452.833837 eV Core-core repulsion = 22006.638705 eV Total energy + Delta-G solvation = -3446.195132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.00494 -38.69114 -37.59716 -35.35192 -33.02930 -32.51810 -30.99022 -30.15426 -29.81174 -29.09074 -27.04082 -25.93095 -23.40816 -22.83622 -21.72904 -21.51542 -21.10453 -20.18928 -17.70031 -16.68525 -16.26383 -16.10298 -15.56968 -15.17466 -14.71359 -14.29266 -14.18711 -13.90196 -13.69121 -13.56369 -13.44002 -12.94283 -12.66503 -12.59711 -12.39724 -12.35117 -12.21273 -11.87332 -11.78990 -11.68147 -11.08387 -11.06446 -10.77981 -10.73818 -10.56796 -10.25195 -10.20833 -10.10794 -9.61411 -9.38790 -9.04512 -8.69495 -8.01067 -7.77470 -7.68330 -6.87265 -6.21443 -4.42218 1.06188 1.60592 2.26002 2.37238 2.60616 3.18799 3.26424 3.27767 3.53772 4.23483 4.43078 4.67927 4.78646 5.00121 5.05705 5.08182 5.28165 5.38288 5.50486 5.63128 5.65264 5.66392 5.75205 5.79414 5.84580 5.85865 5.98285 6.01367 6.14315 6.22498 6.30060 6.39095 6.46998 6.50740 6.62961 6.73254 6.80930 6.87016 6.88852 7.03170 7.08859 7.14821 7.29145 7.34043 7.44425 7.55485 7.63651 7.76583 7.81492 8.00459 8.43715 8.83207 9.31510 10.75375 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003735 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.542943 B = 7495.400254 C = 8314.590194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.115 4.115 5 C -0.008 4.008 6 C -0.196 4.196 7 C 0.189 3.811 8 O -0.282 6.282 9 C 0.239 3.761 10 H 0.033 0.967 11 C -0.559 4.559 12 H 0.068 0.932 13 C 0.089 3.911 14 N -0.836 5.836 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.035 4.035 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.071 4.071 25 C -0.165 4.165 26 C -0.088 4.088 27 C -0.094 4.094 28 C -0.091 4.091 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.120 0.880 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 1.589 -5.407 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.133 4.133 4 C -0.133 4.133 5 C -0.008 4.008 6 C -0.215 4.215 7 C 0.140 3.860 8 O -0.193 6.193 9 C 0.185 3.815 10 H 0.051 0.949 11 C -0.595 4.595 12 H 0.086 0.914 13 C -0.120 4.120 14 N -0.469 5.469 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.036 4.036 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.165 4.165 23 C -0.159 4.159 24 C -0.089 4.089 25 C -0.183 4.183 26 C -0.106 4.106 27 C -0.094 4.094 28 C -0.109 4.109 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.138 0.862 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.681 1.904 -5.287 9.517 hybrid contribution 0.437 -0.813 1.176 1.495 sum -7.244 1.092 -4.111 8.400 Atomic orbital electron populations 1.20722 0.91914 1.02079 1.01689 1.19382 0.95560 0.93247 1.03888 1.20570 0.94234 0.96950 1.01511 1.20900 0.93954 0.97041 1.01436 1.17731 0.92624 0.92558 0.97936 1.20024 0.91961 0.97025 1.12457 1.18737 0.84864 0.92740 0.89681 1.86267 1.13293 1.35770 1.83982 1.18967 0.86441 0.80620 0.95477 0.94889 1.21299 1.43327 1.02010 0.92891 0.91415 1.24948 0.93743 0.94502 0.98813 1.69972 1.38331 1.08212 1.30381 0.86631 0.78965 0.80130 0.82646 1.20274 1.20936 1.19624 1.19929 0.97115 0.93493 0.93068 1.20759 0.95503 0.98970 0.99179 1.20790 0.95168 0.97680 1.01967 1.20867 0.99134 0.95326 1.01145 1.21148 0.96352 0.98893 0.99488 1.21517 0.93170 0.98421 0.95782 1.21394 0.94766 0.98935 1.03214 1.20798 0.93829 0.96569 0.99420 1.17932 0.93133 0.93087 1.05278 1.20757 0.92887 0.97279 0.99968 0.91859 0.92113 0.92090 0.86872 0.86127 0.85732 0.92504 0.87248 0.87494 0.87779 0.87563 0.83231 0.84380 0.86223 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.98 36.00 0.36 -0.71 16 2 C -0.12 -1.63 5.84 -104.97 -0.61 -2.25 16 3 C -0.11 -1.58 9.58 -39.93 -0.38 -1.96 16 4 C -0.12 -1.79 9.77 -39.48 -0.39 -2.17 16 5 C -0.01 -0.15 5.74 -106.84 -0.61 -0.76 16 6 C -0.20 -3.92 9.68 -39.35 -0.38 -4.30 16 7 C 0.19 4.11 6.52 -39.58 -0.26 3.86 16 8 O -0.28 -6.74 7.59 -19.39 -0.15 -6.88 16 9 C 0.24 5.57 2.10 -29.03 -0.06 5.51 16 10 H 0.03 0.73 6.48 -51.93 -0.34 0.39 16 11 C -0.56 -14.02 7.53 -34.44 -0.26 -14.28 16 12 H 0.07 1.68 7.83 -52.49 -0.41 1.26 16 13 C 0.09 2.28 5.22 -17.82 -0.09 2.19 16 14 N -0.84 -21.82 9.55 55.43 0.53 -21.29 16 15 Si 0.89 20.29 29.55 -169.99 -5.02 15.27 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.04 -0.80 4.84 -104.63 -0.51 -1.31 16 20 C -0.13 -2.52 9.70 -39.58 -0.38 -2.90 16 21 C -0.14 -2.48 10.05 -39.59 -0.40 -2.88 16 22 C -0.15 -2.62 10.05 -39.59 -0.40 -3.02 16 23 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 24 C -0.07 -1.59 8.16 -39.58 -0.32 -1.91 16 25 C -0.16 -3.27 8.52 -39.79 -0.34 -3.61 16 26 C -0.09 -1.53 9.76 -39.50 -0.39 -1.92 16 27 C -0.09 -1.64 5.74 -106.81 -0.61 -2.25 16 28 C -0.09 -1.34 9.37 -39.49 -0.37 -1.71 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.53 8.08 -51.92 -0.42 0.11 16 31 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.15 3.66 5.94 -52.49 -0.31 3.35 16 41 H 0.14 2.76 5.51 -52.49 -0.29 2.47 16 42 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -27.42 357.10 -11.61 -39.03 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.55 Total: 8.04 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -6.80 Total: -39.54 kcal Atomic # 7 Polarization: -21.82 SS G_CDS: 0.53 Total: -21.29 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.15 Total: -6.88 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.42 -11.61 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228736752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.191 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds