Wall clock time and date at job start Tue Mar 31 2020 12:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39375 * 119.50411 * 2 1 4 4 C 1.36082 * 120.98096 * 180.02562 * 3 2 1 5 5 C 1.40574 * 119.65969 * 0.02562 * 4 3 2 6 6 C 1.40458 * 121.24112 * 179.97438 * 5 4 3 7 7 C 1.36569 * 119.62364 * 180.02562 * 6 5 4 8 8 O 1.35889 * 119.56532 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99980 * 186.50287 * 8 7 6 10 10 H 1.09005 * 109.46800 * 38.32311 * 9 8 7 11 11 C 1.50703 * 109.47036 * 278.32745 * 9 8 7 12 12 H 1.07998 * 119.99845 * 126.05756 * 11 9 8 13 13 C 1.37871 * 120.00125 * 306.05879 * 11 9 8 14 14 N 1.31516 * 120.00076 * 9.73710 * 13 11 9 15 15 Si 1.86800 * 120.00345 * 189.73654 * 13 11 9 16 16 H 1.48507 * 109.46809 * 89.99811 * 15 13 11 17 17 H 1.48497 * 109.47652 * 210.00062 * 15 13 11 18 18 H 1.48502 * 109.46943 * 330.00235 * 15 13 11 19 19 C 1.50701 * 109.47210 * 158.32887 * 9 8 7 20 20 C 1.38236 * 119.99562 * 210.25044 * 19 9 8 21 21 C 1.38237 * 119.99417 * 179.97438 * 20 19 9 22 22 C 1.38227 * 120.00429 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00004 * 359.97438 * 22 21 20 24 24 C 1.38229 * 119.99907 * 30.22543 * 19 9 8 25 25 C 1.39845 * 120.86996 * 0.26489 * 7 6 5 26 26 C 1.35994 * 120.92498 * 359.44594 * 25 7 6 27 27 C 1.40593 * 119.73296 * 0.55317 * 26 25 7 28 28 C 1.36101 * 119.49979 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47765 * 269.97837 * 1 2 3 30 30 H 1.09007 * 109.47016 * 29.97933 * 1 2 3 31 31 H 1.09000 * 109.47587 * 149.97473 * 1 2 3 32 32 H 1.08006 * 119.50783 * 0.02593 * 3 2 1 33 33 H 1.07999 * 120.17616 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.18702 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00060 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.00187 * 359.97438 * 20 19 9 37 37 H 1.07998 * 119.99653 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.00459 * 179.71981 * 22 21 20 39 39 H 1.07995 * 120.00559 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.00304 * 0.02562 * 24 19 9 41 41 H 1.07997 * 119.53861 * 179.71058 * 25 7 6 42 42 H 1.08004 * 120.12811 * 180.30066 * 26 25 7 43 43 H 1.07995 * 120.17046 * 359.95648 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2130 0.0000 4 6 3.5537 1.2481 -0.0005 5 6 4.2806 0.0449 -0.0016 6 6 5.6852 0.0423 -0.0027 7 6 6.3581 -1.1461 -0.0043 8 8 7.7170 -1.1472 -0.0048 9 6 8.3647 -2.4127 -0.1507 10 1 7.8104 -3.0245 -0.8624 11 6 8.4093 -3.1109 1.1841 12 1 8.0173 -4.1123 1.2830 13 6 8.9506 -2.4713 2.2789 14 7 9.2516 -1.1928 2.2113 15 14 9.2565 -3.4204 3.8585 16 1 10.6242 -3.9984 3.8316 17 1 9.1294 -2.5035 5.0196 18 1 8.2592 -4.5140 3.9798 19 6 9.7692 -2.2030 -0.6551 20 6 10.3709 -3.1652 -1.4443 21 6 11.6591 -2.9726 -1.9074 22 6 12.3452 -1.8176 -1.5819 23 6 11.7430 -0.8549 -0.7935 24 6 10.4554 -1.0482 -0.3290 25 6 5.6671 -2.3619 -0.0104 26 6 4.3075 -2.3932 -0.0036 27 6 3.5824 -1.1887 -0.0021 28 6 2.1772 -1.1846 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6373 2.1389 0.0004 33 1 4.0724 2.1954 -0.0001 34 1 6.2299 0.9748 -0.0032 35 1 9.6321 -0.7427 2.9817 36 1 9.8347 -4.0674 -1.6990 37 1 12.1291 -3.7242 -2.5243 38 1 13.3532 -1.6692 -1.9399 39 1 12.2791 0.0473 -0.5388 40 1 9.9853 -0.2965 0.2875 41 1 6.2209 -3.2891 -0.0163 42 1 3.7870 -3.3395 -0.0035 43 1 1.6318 -2.1167 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228736752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:46 Heat of formation + Delta-G solvation = 16.305188 kcal Electronic energy + Delta-G solvation = -25453.261121 eV Core-core repulsion = 22006.638705 eV Total energy + Delta-G solvation = -3446.622416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38905 -40.21607 -39.08081 -36.73579 -34.82509 -33.78488 -32.59353 -31.57320 -31.24533 -30.41684 -28.74969 -27.12675 -25.12700 -24.17936 -23.24013 -22.83116 -22.47395 -21.74872 -19.35449 -18.12073 -17.88617 -17.55851 -16.94397 -16.86461 -16.22489 -15.76170 -15.56665 -15.46488 -15.17114 -14.87144 -14.69673 -14.28056 -14.07454 -13.94393 -13.80336 -13.70182 -13.64949 -13.39460 -13.18166 -12.95202 -12.86520 -12.54087 -12.42191 -12.14072 -11.97287 -11.82941 -11.63923 -11.55359 -11.17990 -11.02139 -10.71273 -10.32996 -9.55294 -9.29147 -9.12519 -8.35065 -8.08276 -6.37488 -0.24692 0.28051 0.71044 0.83197 1.25287 1.35116 1.37599 1.44479 2.21246 2.35071 2.80330 3.19124 3.22099 3.30577 3.79589 4.02790 4.07632 4.18105 4.23715 4.30419 4.37938 4.39098 4.48871 4.51482 4.54391 4.57413 4.72349 4.81697 4.89912 4.93768 4.99455 5.01818 5.07070 5.11357 5.29412 5.33813 5.41227 5.48545 5.51330 5.60682 5.66491 5.70142 5.77573 5.79196 5.91697 5.95839 6.01345 6.17055 6.24077 6.40716 6.56560 7.10662 7.39293 8.83032 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003735 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.542943 B = 7495.400254 C = 8314.590194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.133 4.133 5 C -0.028 4.028 6 C -0.208 4.208 7 C 0.152 3.848 8 O -0.305 6.305 9 C 0.241 3.759 10 H 0.032 0.968 11 C -0.568 4.568 12 H 0.062 0.938 13 C 0.049 3.951 14 N -0.856 5.856 15 Si 0.939 3.061 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.064 4.064 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.095 4.095 25 C -0.189 4.189 26 C -0.076 4.076 27 C -0.108 4.108 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.260 0.740 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.152 0.848 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 1.148 -6.181 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.122 4.122 4 C -0.151 4.151 5 C -0.028 4.028 6 C -0.227 4.227 7 C 0.104 3.896 8 O -0.217 6.217 9 C 0.187 3.813 10 H 0.050 0.950 11 C -0.605 4.605 12 H 0.080 0.920 13 C -0.158 4.158 14 N -0.490 5.490 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.065 4.065 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.166 4.166 24 C -0.114 4.114 25 C -0.207 4.207 26 C -0.094 4.094 27 C -0.108 4.108 28 C -0.118 4.118 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.170 0.830 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.398 1.461 -6.068 11.281 hybrid contribution 0.753 -0.574 1.327 1.630 sum -8.644 0.887 -4.741 9.899 Atomic orbital electron populations 1.20802 0.88788 1.03716 1.02950 1.19917 0.97832 0.92557 1.01066 1.21035 0.93537 0.98739 0.98864 1.21113 0.95059 0.96595 1.02295 1.17984 0.91826 0.94366 0.98642 1.20148 0.93280 0.96229 1.13041 1.19089 0.84362 0.94174 0.91996 1.86210 1.14652 1.35769 1.85113 1.18911 0.87190 0.80541 0.94697 0.94985 1.21482 1.43080 1.01745 0.94148 0.92020 1.25542 0.93977 0.95148 1.01098 1.70133 1.39277 1.09088 1.30520 0.85853 0.78728 0.79042 0.79856 1.20128 1.21130 1.19246 1.20060 0.96908 0.94667 0.94865 1.21029 0.96759 0.98847 0.98954 1.21250 0.94085 0.98444 1.01113 1.21312 1.00614 0.94297 0.99494 1.21395 0.95315 1.00325 0.99529 1.21338 0.94769 0.98244 0.97030 1.21317 0.95907 0.97752 1.05721 1.21150 0.92877 0.98228 0.97120 1.18249 0.94736 0.92555 1.05292 1.21068 0.91541 0.99262 0.99880 0.90598 0.90396 0.90708 0.83471 0.84993 0.86574 0.93042 0.85980 0.83560 0.83790 0.85722 0.86352 0.85423 0.83021 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.98 71.24 0.71 -0.90 16 2 C -0.11 -2.67 5.84 -20.09 -0.12 -2.78 16 3 C -0.10 -2.55 9.58 22.04 0.21 -2.34 16 4 C -0.13 -4.02 9.77 22.34 0.22 -3.81 16 5 C -0.03 -1.04 5.74 -21.30 -0.12 -1.17 16 6 C -0.21 -8.99 9.68 22.42 0.22 -8.77 16 7 C 0.15 7.15 6.52 22.27 0.15 7.30 16 8 O -0.31 -15.89 7.59 -92.30 -0.70 -16.59 16 9 C 0.24 12.02 2.10 29.10 0.06 12.09 16 10 H 0.03 1.53 6.48 -2.38 -0.02 1.52 16 11 C -0.57 -30.06 7.53 25.60 0.19 -29.87 16 12 H 0.06 3.21 7.83 -2.91 -0.02 3.19 16 13 C 0.05 2.61 5.22 84.65 0.44 3.05 16 14 N -0.86 -47.46 9.55 21.45 0.20 -47.25 16 15 Si 0.94 42.99 29.55 68.60 2.03 45.01 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.06 -3.05 4.84 -19.87 -0.10 -3.15 16 20 C -0.14 -5.53 9.70 22.27 0.22 -5.31 16 21 C -0.13 -4.43 10.05 22.27 0.22 -4.20 16 22 C -0.14 -4.66 10.05 22.27 0.22 -4.44 16 23 C -0.15 -5.78 10.05 22.27 0.22 -5.56 16 24 C -0.10 -4.51 8.16 22.27 0.18 -4.33 16 25 C -0.19 -7.97 8.52 22.14 0.19 -7.78 16 26 C -0.08 -2.67 9.76 22.32 0.22 -2.45 16 27 C -0.11 -3.72 5.74 -21.28 -0.12 -3.84 16 28 C -0.10 -2.67 9.37 22.33 0.21 -2.46 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 31 H 0.07 0.97 8.07 -2.39 -0.02 0.96 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 34 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 35 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 39 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 40 H 0.12 6.30 5.94 -2.91 -0.02 6.28 16 41 H 0.13 5.51 5.51 -2.91 -0.02 5.49 16 42 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -63.97 357.10 5.97 -58.00 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 1.01 Total: 31.53 kcal Atomic # 6 Polarization: -74.13 SS G_CDS: 3.42 Total: -70.71 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.20 Total: -47.25 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.70 Total: -16.59 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.97 5.97 -58.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228736752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.310 kcal (2) G-P(sol) polarization free energy of solvation -63.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds