Wall clock time and date at job start Tue Mar 31 2020 12:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36016 * 119.53594 * 2 1 4 4 C 1.40552 * 119.73497 * 180.26938 * 3 2 1 5 5 C 1.40524 * 121.22435 * 179.74809 * 4 3 2 6 6 C 1.36104 * 119.67151 * 180.02562 * 5 4 3 7 7 C 1.39372 * 120.99474 * 359.97438 * 6 5 4 8 8 C 1.36085 * 120.99403 * 359.97438 * 7 6 5 9 9 C 1.40592 * 119.64938 * 0.02562 * 8 7 6 10 10 C 1.40418 * 121.23649 * 179.97438 * 9 8 7 11 11 C 1.36608 * 119.62136 * 180.02562 * 10 9 8 12 12 O 1.35881 * 119.57179 * 179.97438 * 11 10 9 13 13 C 1.42902 * 116.99436 * 354.52053 * 12 11 10 14 14 H 1.08994 * 109.47472 * 324.19486 * 13 12 11 15 15 C 1.50702 * 109.47047 * 84.20108 * 13 12 11 16 16 H 1.08003 * 119.99551 * 239.99252 * 15 13 12 17 17 C 1.37879 * 120.00162 * 59.72452 * 15 13 12 18 18 N 1.31516 * 119.99654 * 0.27110 * 17 15 13 19 19 Si 1.86791 * 119.99907 * 180.27670 * 17 15 13 20 20 H 1.48494 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47266 * 119.99749 * 19 17 15 22 22 H 1.48501 * 109.47182 * 239.99513 * 19 17 15 23 23 C 1.50704 * 109.46967 * 204.19616 * 13 12 11 24 24 C 1.38235 * 120.00192 * 324.73376 * 23 13 12 25 25 C 1.38234 * 120.00368 * 179.78697 * 24 23 13 26 26 C 1.38235 * 119.99357 * 0.43653 * 25 24 23 27 27 C 1.38228 * 120.00449 * 359.81255 * 26 25 24 28 28 C 1.38236 * 119.99864 * 145.00027 * 23 13 12 29 29 H 1.09000 * 109.47154 * 270.24007 * 1 2 3 30 30 H 1.08997 * 109.46872 * 30.24378 * 1 2 3 31 31 H 1.09005 * 109.47166 * 150.24294 * 1 2 3 32 32 H 1.08008 * 120.13432 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.16483 * 0.02713 * 5 4 3 34 34 H 1.07995 * 119.50010 * 180.02562 * 6 5 4 35 35 H 1.08007 * 119.50676 * 180.02562 * 7 6 5 36 36 H 1.07991 * 120.17613 * 180.02562 * 8 7 6 37 37 H 1.07997 * 120.19194 * 0.02562 * 10 9 8 38 38 H 0.97005 * 119.99631 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00018 * 359.97438 * 24 23 13 40 40 H 1.07997 * 120.00160 * 180.26863 * 25 24 23 41 41 H 1.08003 * 119.99804 * 179.83364 * 26 25 24 42 42 H 1.08006 * 120.00303 * 179.97438 * 27 26 25 43 43 H 1.07991 * 119.99878 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1776 1.1834 0.0000 4 6 3.5831 1.1883 -0.0057 5 6 4.3073 2.3925 -0.0112 6 6 5.6680 2.3603 -0.0172 7 6 6.3573 1.1490 -0.0175 8 6 5.6900 -0.0370 -0.0113 9 6 4.2841 -0.0440 -0.0050 10 6 3.5619 -1.2482 0.0010 11 6 2.1962 -1.2165 0.0065 12 8 1.4984 -2.3824 0.0118 13 6 2.2523 -3.5902 -0.1104 14 1 3.0967 -3.4253 -0.7796 15 6 2.7602 -4.0047 1.2466 16 1 3.8223 -4.0942 1.4214 17 6 1.8694 -4.2643 2.2664 18 7 0.5762 -4.1554 2.0534 19 14 2.4993 -4.7706 3.9504 20 1 3.9833 -4.8200 3.9296 21 1 2.0507 -3.7826 4.9643 22 1 1.9646 -6.1122 4.2962 23 6 1.3720 -4.6774 -0.6708 24 6 0.0341 -4.7296 -0.3267 25 6 -0.7744 -5.7242 -0.8442 26 6 -0.2430 -6.6720 -1.6988 27 6 1.0959 -6.6229 -2.0388 28 6 1.9035 -5.6257 -1.5246 29 1 -0.3633 0.0043 1.0277 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3634 -0.8922 -0.5101 32 1 1.6321 2.1157 0.0004 33 1 3.7868 3.3388 -0.0106 34 1 6.2218 3.2875 -0.0210 35 1 7.4373 1.1515 -0.0219 36 1 6.2374 -0.9679 -0.0112 37 1 4.0831 -2.1941 0.0013 38 1 -0.0506 -4.3377 2.7710 39 1 -0.3801 -3.9914 0.3441 40 1 -1.8206 -5.7624 -0.5788 41 1 -0.8741 -7.4507 -2.1010 42 1 1.5112 -7.3637 -2.7061 43 1 2.9495 -5.5872 -1.7904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234107242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:58 Heat of formation + Delta-G solvation = 31.547399 kcal Electronic energy + Delta-G solvation = -26028.980237 eV Core-core repulsion = 22583.018773 eV Total energy + Delta-G solvation = -3445.961465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.08358 -38.57601 -37.50718 -35.44010 -33.04194 -32.29486 -31.07057 -30.52525 -29.75030 -28.11741 -27.10038 -26.31845 -23.63680 -22.21043 -21.63946 -21.53688 -21.35272 -20.03035 -17.74370 -16.76466 -16.41821 -15.97002 -15.63560 -15.04786 -14.61751 -14.36664 -14.09685 -14.02317 -13.74601 -13.42948 -13.11509 -12.91018 -12.59254 -12.49010 -12.41913 -12.34030 -11.83519 -11.80956 -11.65778 -11.57509 -11.18397 -11.05628 -10.76289 -10.64378 -10.46902 -10.28127 -10.21355 -10.02130 -9.47103 -9.39316 -9.05932 -8.86841 -7.89039 -7.64369 -7.57405 -6.95481 -6.12570 -4.46990 1.02754 1.59834 2.36322 2.52819 2.56824 3.16695 3.25536 3.28488 3.52279 4.21836 4.36588 4.64384 4.92058 5.02639 5.08593 5.20046 5.29499 5.43725 5.62250 5.65098 5.70729 5.74247 5.83762 5.87139 5.95592 6.08287 6.17492 6.19039 6.26694 6.30670 6.38977 6.46615 6.55255 6.59248 6.62487 6.76506 6.81339 6.87102 6.98217 7.03794 7.18598 7.20267 7.33808 7.38593 7.46198 7.54400 7.70314 7.83555 7.93841 8.17812 8.43569 8.79915 9.29683 10.71143 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004522 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.097148 B = 6191.123034 C = 6757.738899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.100 4.100 3 C -0.093 4.093 4 C -0.093 4.093 5 C -0.094 4.094 6 C -0.148 4.148 7 C -0.121 4.121 8 C -0.115 4.115 9 C -0.010 4.010 10 C -0.220 4.220 11 C 0.180 3.820 12 O -0.289 6.289 13 C 0.239 3.761 14 H 0.035 0.965 15 C -0.542 4.542 16 H 0.067 0.933 17 C 0.085 3.915 18 N -0.846 5.846 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.043 4.043 24 C -0.046 4.046 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.265 0.735 39 H 0.165 0.835 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 6.927 -4.894 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.100 4.100 3 C -0.111 4.111 4 C -0.093 4.093 5 C -0.112 4.112 6 C -0.166 4.166 7 C -0.139 4.139 8 C -0.133 4.133 9 C -0.010 4.010 10 C -0.239 4.239 11 C 0.131 3.869 12 O -0.200 6.200 13 C 0.185 3.815 14 H 0.053 0.947 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.122 4.122 18 N -0.480 5.480 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.044 4.044 24 C -0.065 4.065 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.166 4.166 28 C -0.144 4.144 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.182 0.818 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.802 6.842 -4.778 8.537 hybrid contribution 0.644 -0.658 1.173 1.491 sum 2.446 6.183 -3.605 7.564 Atomic orbital electron populations 1.20618 0.90857 1.02234 1.02277 1.19168 0.96583 0.90849 1.03434 1.20600 0.92626 0.96867 1.01001 1.17922 0.93333 0.92890 1.05197 1.20878 0.94198 0.96636 0.99463 1.20603 0.94408 0.97491 1.04127 1.20691 0.99339 0.92622 1.01218 1.20981 0.93224 0.98078 1.01058 1.17888 0.93155 0.92479 0.97528 1.21112 0.93660 0.98019 1.11117 1.18572 0.90248 0.87176 0.90925 1.86237 1.37554 1.12086 1.84161 1.19002 0.88051 0.79005 0.95439 0.94737 1.21394 0.93582 1.48361 0.94458 0.91459 1.24994 0.94719 0.93298 0.99153 1.69805 1.01123 1.45396 1.31714 0.86487 0.79427 0.78298 0.83622 1.19505 1.20610 1.20670 1.19773 0.94504 0.96662 0.93445 1.21873 0.93058 0.98177 0.93389 1.21156 0.99221 0.97239 0.99431 1.20853 0.95296 0.99439 1.00525 1.20710 0.94253 0.99313 1.02366 1.20755 0.98789 0.96158 0.98656 0.91440 0.92618 0.90651 0.85868 0.86497 0.86984 0.86889 0.86159 0.84398 0.92472 0.81837 0.87872 0.88118 0.87810 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.75 36.01 0.35 -1.33 16 2 C -0.10 -1.85 5.86 -104.83 -0.61 -2.46 16 3 C -0.09 -1.53 9.36 -39.51 -0.37 -1.90 16 4 C -0.09 -1.59 5.74 -106.81 -0.61 -2.20 16 5 C -0.09 -1.34 9.77 -39.49 -0.39 -1.73 16 6 C -0.15 -1.98 9.95 -39.93 -0.40 -2.38 16 7 C -0.12 -1.68 9.95 -39.93 -0.40 -2.08 16 8 C -0.12 -1.86 9.77 -39.47 -0.39 -2.24 16 9 C -0.01 -0.19 5.74 -106.84 -0.61 -0.80 16 10 C -0.22 -4.49 8.39 -39.35 -0.33 -4.82 16 11 C 0.18 3.82 6.53 -39.58 -0.26 3.56 16 12 O -0.29 -6.71 7.32 -19.37 -0.14 -6.85 16 13 C 0.24 5.59 2.11 -29.03 -0.06 5.53 16 14 H 0.03 0.78 6.24 -51.93 -0.32 0.45 16 15 C -0.54 -13.68 7.87 -34.44 -0.27 -13.95 16 16 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.09 2.17 5.24 -17.82 -0.09 2.07 16 18 N -0.85 -21.55 8.51 55.43 0.47 -21.08 16 19 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.04 -0.99 4.81 -104.62 -0.50 -1.49 16 24 C -0.05 -1.05 7.47 -39.58 -0.30 -1.34 16 25 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 26 C -0.14 -2.65 10.05 -39.59 -0.40 -3.05 16 27 C -0.15 -2.77 10.05 -39.59 -0.40 -3.17 16 28 C -0.13 -2.58 9.68 -39.58 -0.38 -2.97 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.07 1.32 7.49 -51.93 -0.39 0.93 16 32 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.14 2.88 5.55 -52.49 -0.29 2.59 16 38 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 39 H 0.16 3.99 5.50 -52.49 -0.29 3.70 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -27.04 354.46 -11.65 -38.68 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.49 Total: 8.80 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: -6.81 Total: -40.21 kcal Atomic # 7 Polarization: -21.55 SS G_CDS: 0.47 Total: -21.08 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.14 Total: -6.85 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.04 -11.65 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234107242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.232 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds