Wall clock time and date at job start Tue Mar 31 2020 12:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36016 * 119.53594 * 2 1 4 4 C 1.40552 * 119.73497 * 180.26938 * 3 2 1 5 5 C 1.40524 * 121.22435 * 179.74809 * 4 3 2 6 6 C 1.36104 * 119.67151 * 180.02562 * 5 4 3 7 7 C 1.39372 * 120.99474 * 359.97438 * 6 5 4 8 8 C 1.36085 * 120.99403 * 359.97438 * 7 6 5 9 9 C 1.40592 * 119.64938 * 0.02562 * 8 7 6 10 10 C 1.40418 * 121.23649 * 179.97438 * 9 8 7 11 11 C 1.36608 * 119.62136 * 180.02562 * 10 9 8 12 12 O 1.35881 * 119.57179 * 179.97438 * 11 10 9 13 13 C 1.42902 * 116.99436 * 354.52053 * 12 11 10 14 14 H 1.08994 * 109.47472 * 324.19486 * 13 12 11 15 15 C 1.50702 * 109.47047 * 84.20108 * 13 12 11 16 16 H 1.08003 * 119.99551 * 239.99252 * 15 13 12 17 17 C 1.37879 * 120.00162 * 59.72452 * 15 13 12 18 18 N 1.31516 * 119.99654 * 0.27110 * 17 15 13 19 19 Si 1.86791 * 119.99907 * 180.27670 * 17 15 13 20 20 H 1.48494 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47266 * 119.99749 * 19 17 15 22 22 H 1.48501 * 109.47182 * 239.99513 * 19 17 15 23 23 C 1.50704 * 109.46967 * 204.19616 * 13 12 11 24 24 C 1.38235 * 120.00192 * 324.73376 * 23 13 12 25 25 C 1.38234 * 120.00368 * 179.78697 * 24 23 13 26 26 C 1.38235 * 119.99357 * 0.43653 * 25 24 23 27 27 C 1.38228 * 120.00449 * 359.81255 * 26 25 24 28 28 C 1.38236 * 119.99864 * 145.00027 * 23 13 12 29 29 H 1.09000 * 109.47154 * 270.24007 * 1 2 3 30 30 H 1.08997 * 109.46872 * 30.24378 * 1 2 3 31 31 H 1.09005 * 109.47166 * 150.24294 * 1 2 3 32 32 H 1.08008 * 120.13432 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.16483 * 0.02713 * 5 4 3 34 34 H 1.07995 * 119.50010 * 180.02562 * 6 5 4 35 35 H 1.08007 * 119.50676 * 180.02562 * 7 6 5 36 36 H 1.07991 * 120.17613 * 180.02562 * 8 7 6 37 37 H 1.07997 * 120.19194 * 0.02562 * 10 9 8 38 38 H 0.97005 * 119.99631 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00018 * 359.97438 * 24 23 13 40 40 H 1.07997 * 120.00160 * 180.26863 * 25 24 23 41 41 H 1.08003 * 119.99804 * 179.83364 * 26 25 24 42 42 H 1.08006 * 120.00303 * 179.97438 * 27 26 25 43 43 H 1.07991 * 119.99878 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1776 1.1834 0.0000 4 6 3.5831 1.1883 -0.0057 5 6 4.3073 2.3925 -0.0112 6 6 5.6680 2.3603 -0.0172 7 6 6.3573 1.1490 -0.0175 8 6 5.6900 -0.0370 -0.0113 9 6 4.2841 -0.0440 -0.0050 10 6 3.5619 -1.2482 0.0010 11 6 2.1962 -1.2165 0.0065 12 8 1.4984 -2.3824 0.0118 13 6 2.2523 -3.5902 -0.1104 14 1 3.0967 -3.4253 -0.7796 15 6 2.7602 -4.0047 1.2466 16 1 3.8223 -4.0942 1.4214 17 6 1.8694 -4.2643 2.2664 18 7 0.5762 -4.1554 2.0534 19 14 2.4993 -4.7706 3.9504 20 1 3.9833 -4.8200 3.9296 21 1 2.0507 -3.7826 4.9643 22 1 1.9646 -6.1122 4.2962 23 6 1.3720 -4.6774 -0.6708 24 6 0.0341 -4.7296 -0.3267 25 6 -0.7744 -5.7242 -0.8442 26 6 -0.2430 -6.6720 -1.6988 27 6 1.0959 -6.6229 -2.0388 28 6 1.9035 -5.6257 -1.5246 29 1 -0.3633 0.0043 1.0277 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3634 -0.8922 -0.5101 32 1 1.6321 2.1157 0.0004 33 1 3.7868 3.3388 -0.0106 34 1 6.2218 3.2875 -0.0210 35 1 7.4373 1.1515 -0.0219 36 1 6.2374 -0.9679 -0.0112 37 1 4.0831 -2.1941 0.0013 38 1 -0.0506 -4.3377 2.7710 39 1 -0.3801 -3.9914 0.3441 40 1 -1.8206 -5.7624 -0.5788 41 1 -0.8741 -7.4507 -2.1010 42 1 1.5112 -7.3637 -2.7061 43 1 2.9495 -5.5872 -1.7904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234107242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:57 Heat of formation + Delta-G solvation = 22.063657 kcal Electronic energy + Delta-G solvation = -26029.391483 eV Core-core repulsion = 22583.018773 eV Total energy + Delta-G solvation = -3446.372711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46942 -40.12090 -38.99260 -36.84236 -34.85288 -33.60790 -32.54215 -31.99465 -31.33974 -29.47528 -28.88401 -27.58177 -25.37341 -23.64978 -23.10949 -22.88075 -22.71911 -21.63218 -19.37058 -18.23738 -17.93251 -17.37932 -17.16105 -16.82154 -15.96301 -15.84706 -15.70384 -15.40594 -15.20162 -14.99895 -14.62234 -14.25394 -13.99708 -13.89222 -13.74073 -13.71797 -13.47591 -13.33531 -13.24158 -13.02911 -12.89009 -12.53444 -12.46234 -12.22042 -11.87129 -11.80840 -11.64094 -11.47789 -11.09706 -10.91832 -10.79045 -10.52264 -9.48341 -9.24974 -8.94599 -8.40586 -8.00451 -6.42911 -0.24433 0.29010 0.76002 0.94234 1.25792 1.32051 1.35602 1.44062 2.21601 2.32764 2.74929 3.18663 3.30127 3.32105 3.80090 4.01687 4.14731 4.20838 4.26457 4.31842 4.35271 4.43028 4.49817 4.51733 4.55185 4.64474 4.75147 4.80116 4.87698 4.92709 4.99859 5.02378 5.15811 5.22265 5.28536 5.31086 5.39841 5.53466 5.56659 5.62872 5.66355 5.73053 5.80557 5.84830 5.92185 6.02283 6.08267 6.20377 6.31203 6.46277 6.59822 7.07190 7.35970 8.78680 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004522 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.097148 B = 6191.123034 C = 6757.738899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.127 4.127 3 C -0.076 4.076 4 C -0.110 4.110 5 C -0.093 4.093 6 C -0.142 4.142 7 C -0.107 4.107 8 C -0.144 4.144 9 C -0.033 4.033 10 C -0.238 4.238 11 C 0.144 3.856 12 O -0.305 6.305 13 C 0.243 3.757 14 H 0.025 0.975 15 C -0.558 4.558 16 H 0.053 0.947 17 C 0.047 3.953 18 N -0.856 5.856 19 Si 0.943 3.057 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.276 1.276 23 C -0.070 4.070 24 C -0.066 4.066 25 C -0.159 4.159 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.263 0.737 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 8.689 -5.589 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.110 4.110 5 C -0.111 4.111 6 C -0.160 4.160 7 C -0.125 4.125 8 C -0.162 4.162 9 C -0.033 4.033 10 C -0.257 4.257 11 C 0.096 3.904 12 O -0.218 6.218 13 C 0.189 3.811 14 H 0.043 0.957 15 C -0.594 4.594 16 H 0.071 0.929 17 C -0.158 4.158 18 N -0.491 5.491 19 Si 0.769 3.231 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.202 1.202 23 C -0.071 4.071 24 C -0.085 4.085 25 C -0.177 4.177 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.159 4.159 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.352 8.609 -5.481 10.473 hybrid contribution 0.625 -1.057 1.303 1.790 sum 2.977 7.552 -4.178 9.130 Atomic orbital electron populations 1.20553 0.89674 1.02781 1.02050 1.19437 0.97666 0.90572 1.05083 1.21036 0.92721 0.97437 0.98194 1.18297 0.93941 0.93474 1.05260 1.21282 0.94827 0.96725 0.98252 1.21118 0.94416 0.98677 1.01777 1.21136 1.01083 0.91954 0.98335 1.21124 0.92508 0.99512 1.03016 1.18134 0.94392 0.92427 0.98386 1.21054 0.93730 0.98296 1.12619 1.19051 0.90902 0.87557 0.92864 1.86172 1.37770 1.12598 1.85223 1.18847 0.88178 0.79625 0.94408 0.95713 1.21491 0.92935 1.48982 0.96004 0.92928 1.25548 0.95074 0.93688 1.01443 1.69990 1.01400 1.45735 1.31993 0.85743 0.78708 0.77982 0.80665 1.19733 1.20649 1.20188 1.19903 0.94865 0.97305 0.95011 1.21687 0.93476 0.99006 0.94351 1.21410 0.99997 0.96818 0.99460 1.21280 0.95696 0.99370 0.99141 1.21139 0.94237 0.98891 1.01810 1.21006 0.99725 0.96455 0.98675 0.92035 0.89004 0.93032 0.81865 0.82905 0.82993 0.83710 0.86225 0.86655 0.92689 0.84322 0.85928 0.84210 0.84145 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.14 9.75 71.24 0.69 -2.45 16 2 C -0.13 -4.86 5.86 -20.00 -0.12 -4.98 16 3 C -0.08 -2.42 9.36 22.32 0.21 -2.21 16 4 C -0.11 -3.61 5.74 -21.28 -0.12 -3.73 16 5 C -0.09 -2.31 9.77 22.33 0.22 -2.09 16 6 C -0.14 -3.18 9.95 22.05 0.22 -2.96 16 7 C -0.11 -2.70 9.95 22.04 0.22 -2.48 16 8 C -0.14 -4.65 9.77 22.34 0.22 -4.43 16 9 C -0.03 -1.26 5.74 -21.30 -0.12 -1.39 16 10 C -0.24 -10.55 8.39 22.42 0.19 -10.36 16 11 C 0.14 6.60 6.53 22.27 0.15 6.75 16 12 O -0.31 -15.45 7.32 -92.21 -0.68 -16.12 16 13 C 0.24 12.39 2.11 29.10 0.06 12.45 16 14 H 0.03 1.25 6.24 -2.39 -0.01 1.24 16 15 C -0.56 -30.25 7.87 25.60 0.20 -30.05 16 16 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 17 C 0.05 2.54 5.24 84.65 0.44 2.98 16 18 N -0.86 -46.00 8.51 21.45 0.18 -45.81 16 19 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 C -0.07 -3.39 4.81 -19.86 -0.10 -3.49 16 24 C -0.07 -3.14 7.47 22.27 0.17 -2.98 16 25 C -0.16 -6.35 10.05 22.27 0.22 -6.12 16 26 C -0.14 -4.80 10.05 22.27 0.22 -4.57 16 27 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 28 C -0.14 -5.92 9.68 22.27 0.22 -5.70 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.05 1.93 7.49 -2.38 -0.02 1.92 16 32 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.12 3.71 8.06 -2.92 -0.02 3.69 16 37 H 0.12 5.44 5.55 -2.91 -0.02 5.42 16 38 H 0.26 13.53 8.31 -92.70 -0.77 12.75 16 39 H 0.14 7.25 5.50 -2.91 -0.02 7.24 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.11 4.44 8.06 -2.92 -0.02 4.41 16 Total: -1.00 -63.64 354.46 5.96 -57.68 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 1.01 Total: 31.55 kcal Atomic # 6 Polarization: -76.11 SS G_CDS: 3.41 Total: -72.70 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.18 Total: -45.81 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.68 Total: -16.12 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -63.64 5.96 -57.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234107242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.739 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds